Wall clock time and date at job start Tue Mar 31 2020 05:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47359 * 2 1 4 4 C 1.46900 * 111.00088 * 199.71534 * 3 2 1 5 5 C 1.50697 * 109.47397 * 66.04419 * 4 3 2 6 6 H 1.07995 * 119.99912 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99842 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99937 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99567 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47537 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47350 * 120.00054 * 9 7 5 12 12 H 1.48508 * 109.46915 * 239.99737 * 9 7 5 13 13 C 1.46900 * 110.99914 * 75.75541 * 3 2 1 14 14 C 1.50699 * 109.47026 * 199.76714 * 13 3 2 15 15 C 1.38474 * 119.82447 * 84.41298 * 14 13 3 16 16 C 1.37835 * 120.22462 * 180.28000 * 15 14 13 17 17 C 1.39717 * 119.87297 * 359.46749 * 16 15 14 18 18 C 1.47564 * 120.17325 * 180.27845 * 17 16 15 19 19 O 1.21490 * 120.00026 * 180.24423 * 18 17 16 20 20 O 1.34732 * 120.00003 * 0.25205 * 18 17 16 21 21 C 1.39881 * 119.65389 * 0.52660 * 17 16 15 22 22 F 1.35103 * 120.11264 * 179.72786 * 21 17 16 23 23 C 1.38202 * 119.82368 * 264.43277 * 14 13 3 24 24 H 1.08998 * 109.47388 * 294.85793 * 1 2 3 25 25 H 1.08998 * 109.46907 * 54.86065 * 1 2 3 26 26 H 1.08995 * 109.47204 * 174.85811 * 1 2 3 27 27 H 1.09003 * 109.47008 * 240.00096 * 2 1 3 28 28 H 1.09002 * 109.47304 * 120.00065 * 2 1 3 29 29 H 1.09001 * 109.46921 * 186.04416 * 4 3 2 30 30 H 1.09000 * 109.47040 * 306.04278 * 4 3 2 31 31 H 0.97004 * 119.99826 * 180.02562 * 8 7 5 32 32 H 1.09005 * 109.46924 * 79.76764 * 13 3 2 33 33 H 1.08998 * 109.47245 * 319.76690 * 13 3 2 34 34 H 1.08000 * 119.88513 * 359.97438 * 15 14 13 35 35 H 1.08003 * 120.05882 * 179.74488 * 16 15 14 36 36 H 0.96697 * 117.00295 * 179.97438 * 20 18 17 37 37 H 1.08000 * 119.94632 * 359.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4124 1.4509 -0.4626 5 6 3.4797 1.0469 -1.9129 6 1 2.5780 0.7693 -2.4385 7 6 4.6924 1.0316 -2.5687 8 7 5.7903 1.3701 -1.9287 9 14 4.7757 0.5314 -4.3665 10 1 3.4120 0.1998 -4.8518 11 1 5.3273 1.6536 -5.1676 12 1 5.6542 -0.6574 -4.5094 13 6 1.8770 1.9938 1.3293 14 6 1.9165 3.4948 1.2011 15 6 0.7600 4.1901 0.8904 16 6 0.7878 5.5625 0.7655 17 6 1.9848 6.2552 0.9641 18 6 2.0208 7.7250 0.8381 19 8 3.0643 8.3237 1.0071 20 8 0.8965 8.4030 0.5358 21 6 3.1500 5.5477 1.2779 22 9 4.3137 6.2076 1.4664 23 6 3.1068 4.1700 1.3940 24 1 -0.3634 0.4320 0.9324 25 1 -0.3633 0.5915 -0.8404 26 1 -0.3633 -1.0235 -0.0921 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.7842 2.4695 -0.3516 30 1 4.0253 0.7736 0.1321 31 1 6.6435 1.3597 -2.3902 32 1 2.6940 1.6622 1.9703 33 1 0.9258 1.6914 1.7672 34 1 -0.1660 3.6547 0.7405 35 1 -0.1149 6.1017 0.5190 36 1 0.9694 9.3645 0.4644 37 1 4.0048 3.6212 1.6362 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233436245.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:54 Heat of formation + Delta-G solvation = -110.637864 kcal Electronic energy + Delta-G solvation = -21828.539401 eV Core-core repulsion = 18292.207085 eV Total energy + Delta-G solvation = -3536.332316 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.69987 -40.24980 -38.92232 -36.72818 -36.07297 -32.76211 -32.15281 -30.50552 -29.86788 -27.66011 -25.40431 -23.24504 -22.70730 -22.36615 -21.10042 -19.87329 -18.15500 -17.47907 -16.62455 -16.53860 -15.99955 -15.89010 -15.07202 -15.00491 -14.65691 -14.47665 -14.24421 -13.99102 -13.54260 -13.07681 -12.83002 -12.55786 -12.14596 -12.06334 -11.83357 -11.60578 -11.51816 -11.27624 -11.18210 -10.99360 -10.70783 -10.60633 -10.46234 -10.22426 -9.88647 -9.23075 -8.90426 -8.60889 -8.46794 -7.39535 -6.06253 -4.07418 0.64851 1.32835 2.54191 2.92804 3.29105 3.37125 3.40904 3.68095 4.24681 4.40386 4.67892 4.85275 4.98488 5.08608 5.30004 5.33546 5.36868 5.56380 5.68299 5.77056 5.89404 5.93909 6.02994 6.07804 6.14905 6.21792 6.28083 6.39801 6.60544 6.65183 6.71804 6.88734 7.20856 7.25934 7.74621 7.84731 8.00751 8.10894 8.45871 8.99933 9.56930 11.04682 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014897 B = 0.005233 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.181905 B = 5349.300530 C = 6340.364723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.055 3.945 3 N -0.530 5.530 4 C 0.187 3.813 5 C -0.508 4.508 6 H 0.064 0.936 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.285 1.285 13 C 0.080 3.920 14 C 0.012 3.988 15 C -0.126 4.126 16 C -0.037 4.037 17 C -0.181 4.181 18 C 0.529 3.471 19 O -0.507 6.507 20 O -0.513 6.513 21 C 0.167 3.833 22 F -0.118 7.118 23 C -0.153 4.153 24 H 0.043 0.957 25 H 0.061 0.939 26 H 0.048 0.952 27 H 0.089 0.911 28 H 0.020 0.980 29 H 0.035 0.965 30 H -0.009 1.009 31 H 0.261 0.739 32 H 0.042 0.958 33 H 0.079 0.921 34 H 0.137 0.863 35 H 0.143 0.857 36 H 0.412 0.588 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.952 6.305 7.907 15.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.073 4.073 3 N -0.255 5.255 4 C 0.063 3.937 5 C -0.546 4.546 6 H 0.082 0.918 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.724 3.276 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.211 1.211 13 C -0.048 4.048 14 C 0.011 3.989 15 C -0.145 4.145 16 C -0.055 4.055 17 C -0.183 4.183 18 C 0.373 3.627 19 O -0.396 6.396 20 O -0.325 6.325 21 C 0.147 3.853 22 F -0.096 7.096 23 C -0.172 4.172 24 H 0.062 0.938 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.107 0.893 28 H 0.038 0.962 29 H 0.054 0.946 30 H 0.009 0.991 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.098 0.902 34 H 0.155 0.845 35 H 0.161 0.839 36 H 0.271 0.729 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.734 6.336 7.632 15.365 hybrid contribution 1.111 0.111 -0.543 1.241 sum -10.624 6.448 7.089 14.307 Atomic orbital electron populations 1.21808 0.96511 1.00504 1.01376 1.22000 0.94260 0.89776 1.01236 1.62169 1.25934 1.17088 1.20277 1.19855 0.81091 0.97221 0.95576 1.21154 0.93311 1.44842 0.95343 0.91755 1.24979 0.95656 0.95533 0.98364 1.69955 0.98477 1.48542 1.36613 0.86473 0.78085 0.78106 0.84961 1.19634 1.21014 1.21107 1.21167 1.01311 0.89259 0.93082 1.20029 0.91729 0.96433 0.90672 1.21022 0.99027 0.93248 1.01157 1.21253 0.96150 0.94270 0.93844 1.18952 0.95111 0.89599 1.14663 1.20651 0.80839 0.88335 0.72848 1.90942 1.31722 1.70276 1.46692 1.84544 1.37994 1.26899 1.83019 1.17625 0.80561 0.90000 0.97107 1.91583 1.45537 1.80863 1.91610 1.21131 1.00138 0.91402 1.04559 0.93841 0.92039 0.93299 0.89293 0.96172 0.94650 0.99088 0.92918 0.94009 0.90245 0.84501 0.83888 0.72935 0.83679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.96 37.16 0.37 -1.63 16 2 C 0.06 0.97 5.51 -3.83 -0.02 0.95 16 3 N -0.53 -10.36 4.34 -237.52 -1.03 -11.39 16 4 C 0.19 4.61 4.54 -4.98 -0.02 4.59 16 5 C -0.51 -13.79 8.23 -34.44 -0.28 -14.07 16 6 H 0.06 1.73 7.31 -52.49 -0.38 1.35 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 9 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.08 1.26 4.94 -4.98 -0.02 1.24 16 14 C 0.01 0.19 5.04 -104.55 -0.53 -0.33 16 15 C -0.13 -1.68 9.70 -39.64 -0.38 -2.06 16 16 C -0.04 -0.47 9.61 -39.18 -0.38 -0.85 16 17 C -0.18 -2.75 5.88 -104.93 -0.62 -3.37 16 18 C 0.53 7.73 8.27 34.53 0.29 8.02 16 19 O -0.51 -9.01 16.13 -19.26 -0.31 -9.32 16 20 O -0.51 -5.28 12.68 -40.58 -0.51 -5.79 16 21 C 0.17 2.86 7.29 -38.94 -0.28 2.58 16 22 F -0.12 -2.22 15.55 2.25 0.04 -2.19 16 23 C -0.15 -2.57 8.35 -39.57 -0.33 -2.90 16 24 H 0.04 0.53 6.89 -51.93 -0.36 0.17 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.09 1.77 6.58 -51.93 -0.34 1.43 16 28 H 0.02 0.34 8.00 -51.93 -0.42 -0.08 16 29 H 0.04 0.93 6.32 -51.93 -0.33 0.60 16 30 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 31 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.04 0.67 7.90 -51.93 -0.41 0.26 16 33 H 0.08 1.04 6.54 -51.93 -0.34 0.70 16 34 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.14 1.44 7.61 -52.48 -0.40 1.04 16 36 H 0.41 2.29 9.11 45.56 0.42 2.71 16 37 H 0.15 2.46 7.98 -52.49 -0.42 2.05 16 LS Contribution 320.64 15.07 4.83 4.83 Total: -1.00 -32.44 320.64 -7.39 -39.83 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -3.80 Total: -0.44 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -2.31 Total: -6.37 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: -0.30 Total: -36.97 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.83 Total: -15.11 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.44 -7.39 -39.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233436245.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.806 kcal (2) G-P(sol) polarization free energy of solvation -32.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds