Wall clock time and date at job start Tue Mar 31 2020 05:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47359 * 2 1 4 4 C 1.46900 * 111.00088 * 199.71534 * 3 2 1 5 5 C 1.50697 * 109.47397 * 66.04419 * 4 3 2 6 6 H 1.07995 * 119.99912 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99842 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99937 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99567 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47537 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47350 * 120.00054 * 9 7 5 12 12 H 1.48508 * 109.46915 * 239.99737 * 9 7 5 13 13 C 1.46900 * 110.99914 * 75.75541 * 3 2 1 14 14 C 1.50699 * 109.47026 * 199.76714 * 13 3 2 15 15 C 1.38474 * 119.82447 * 84.41298 * 14 13 3 16 16 C 1.37835 * 120.22462 * 180.28000 * 15 14 13 17 17 C 1.39717 * 119.87297 * 359.46749 * 16 15 14 18 18 C 1.47564 * 120.17325 * 180.27845 * 17 16 15 19 19 O 1.21490 * 120.00026 * 180.24423 * 18 17 16 20 20 O 1.34732 * 120.00003 * 0.25205 * 18 17 16 21 21 C 1.39881 * 119.65389 * 0.52660 * 17 16 15 22 22 F 1.35103 * 120.11264 * 179.72786 * 21 17 16 23 23 C 1.38202 * 119.82368 * 264.43277 * 14 13 3 24 24 H 1.08998 * 109.47388 * 294.85793 * 1 2 3 25 25 H 1.08998 * 109.46907 * 54.86065 * 1 2 3 26 26 H 1.08995 * 109.47204 * 174.85811 * 1 2 3 27 27 H 1.09003 * 109.47008 * 240.00096 * 2 1 3 28 28 H 1.09002 * 109.47304 * 120.00065 * 2 1 3 29 29 H 1.09001 * 109.46921 * 186.04416 * 4 3 2 30 30 H 1.09000 * 109.47040 * 306.04278 * 4 3 2 31 31 H 0.97004 * 119.99826 * 180.02562 * 8 7 5 32 32 H 1.09005 * 109.46924 * 79.76764 * 13 3 2 33 33 H 1.08998 * 109.47245 * 319.76690 * 13 3 2 34 34 H 1.08000 * 119.88513 * 359.97438 * 15 14 13 35 35 H 1.08003 * 120.05882 * 179.74488 * 16 15 14 36 36 H 0.96697 * 117.00295 * 179.97438 * 20 18 17 37 37 H 1.08000 * 119.94632 * 359.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4124 1.4509 -0.4626 5 6 3.4797 1.0469 -1.9129 6 1 2.5780 0.7693 -2.4385 7 6 4.6924 1.0316 -2.5687 8 7 5.7903 1.3701 -1.9287 9 14 4.7757 0.5314 -4.3665 10 1 3.4120 0.1998 -4.8518 11 1 5.3273 1.6536 -5.1676 12 1 5.6542 -0.6574 -4.5094 13 6 1.8770 1.9938 1.3293 14 6 1.9165 3.4948 1.2011 15 6 0.7600 4.1901 0.8904 16 6 0.7878 5.5625 0.7655 17 6 1.9848 6.2552 0.9641 18 6 2.0208 7.7250 0.8381 19 8 3.0643 8.3237 1.0071 20 8 0.8965 8.4030 0.5358 21 6 3.1500 5.5477 1.2779 22 9 4.3137 6.2076 1.4664 23 6 3.1068 4.1700 1.3940 24 1 -0.3634 0.4320 0.9324 25 1 -0.3633 0.5915 -0.8404 26 1 -0.3633 -1.0235 -0.0921 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.7842 2.4695 -0.3516 30 1 4.0253 0.7736 0.1321 31 1 6.6435 1.3597 -2.3902 32 1 2.6940 1.6622 1.9703 33 1 0.9258 1.6914 1.7672 34 1 -0.1660 3.6547 0.7405 35 1 -0.1149 6.1017 0.5190 36 1 0.9694 9.3645 0.4644 37 1 4.0048 3.6212 1.6362 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233436245.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:53 Heat of formation + Delta-G solvation = -132.443250 kcal Electronic energy + Delta-G solvation = -21829.484954 eV Core-core repulsion = 18292.207085 eV Total energy + Delta-G solvation = -3537.277869 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.06414 -41.36710 -40.14019 -38.18222 -37.11319 -34.79461 -33.39490 -31.69608 -31.32261 -29.28763 -26.94998 -24.66601 -24.01146 -23.80298 -22.29807 -21.34512 -19.23490 -18.66560 -18.51727 -17.86167 -17.29875 -17.12249 -16.75380 -16.32563 -16.01635 -15.97790 -15.62068 -15.36713 -14.79851 -14.32170 -14.22874 -14.05468 -13.89251 -13.27950 -13.25435 -12.84796 -12.78071 -12.65066 -12.54915 -12.46530 -12.42155 -12.28095 -11.83197 -11.65808 -11.52678 -11.18887 -10.61536 -10.12344 -9.80202 -9.01511 -8.19883 -6.28358 -0.53464 0.15048 1.39015 1.39681 1.41120 1.53451 1.91845 2.39477 2.51581 3.03379 3.14076 3.40103 3.59840 3.75279 3.99283 4.15003 4.24745 4.31245 4.47858 4.55803 4.66972 4.74833 4.84080 4.94365 4.98100 5.08782 5.13809 5.16531 5.25079 5.40020 5.47485 5.49951 5.56585 5.67695 5.73916 6.08591 6.36742 6.63678 6.89155 6.90558 7.41090 8.91219 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014897 B = 0.005233 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.181905 B = 5349.300530 C = 6340.364723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.051 3.949 3 N -0.531 5.531 4 C 0.203 3.797 5 C -0.516 4.516 6 H 0.065 0.935 7 C 0.000 4.000 8 N -0.936 5.936 9 Si 0.963 3.037 10 H -0.259 1.259 11 H -0.284 1.284 12 H -0.280 1.280 13 C 0.081 3.919 14 C -0.001 4.001 15 C -0.113 4.113 16 C -0.019 4.019 17 C -0.188 4.188 18 C 0.536 3.464 19 O -0.547 6.547 20 O -0.492 6.492 21 C 0.136 3.864 22 F -0.138 7.138 23 C -0.169 4.169 24 H 0.068 0.932 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.025 0.975 29 H 0.011 0.989 30 H -0.041 1.041 31 H 0.262 0.738 32 H 0.032 0.968 33 H 0.119 0.881 34 H 0.172 0.828 35 H 0.183 0.817 36 H 0.435 0.565 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.622 6.314 7.292 18.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.076 4.076 3 N -0.256 5.256 4 C 0.076 3.924 5 C -0.554 4.554 6 H 0.084 0.916 7 C -0.198 4.198 8 N -0.577 5.577 9 Si 0.788 3.212 10 H -0.183 1.183 11 H -0.210 1.210 12 H -0.206 1.206 13 C -0.046 4.046 14 C -0.002 4.002 15 C -0.132 4.132 16 C -0.037 4.037 17 C -0.190 4.190 18 C 0.381 3.619 19 O -0.440 6.440 20 O -0.306 6.306 21 C 0.116 3.884 22 F -0.117 7.117 23 C -0.188 4.188 24 H 0.087 0.913 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.043 0.957 29 H 0.029 0.971 30 H -0.024 1.024 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.137 0.863 34 H 0.190 0.810 35 H 0.200 0.800 36 H 0.298 0.702 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.458 6.353 7.022 18.128 hybrid contribution 2.159 0.135 -0.300 2.184 sum -13.299 6.489 6.721 16.253 Atomic orbital electron populations 1.21708 0.92759 1.02002 1.02474 1.22071 0.97188 0.88342 1.00027 1.62090 1.22126 1.18587 1.22776 1.19462 0.83824 0.94714 0.94351 1.21509 0.93294 1.44066 0.96574 0.91644 1.25877 0.95367 0.95642 1.02890 1.70094 0.99058 1.50041 1.38489 0.85420 0.78591 0.77662 0.79503 1.18279 1.21024 1.20552 1.21271 1.02963 0.89311 0.91070 1.20122 0.92141 0.96321 0.91619 1.21405 0.99161 0.93555 0.99032 1.21674 0.96242 0.94168 0.91582 1.19197 0.95187 0.90384 1.14272 1.20551 0.81081 0.88211 0.72030 1.90934 1.33443 1.70978 1.48619 1.84474 1.35454 1.28864 1.81818 1.17929 0.80933 0.90334 0.99181 1.91520 1.46827 1.81209 1.92110 1.21089 1.00386 0.91558 1.05777 0.91314 0.92549 0.91387 0.92378 0.95660 0.97061 1.02359 0.92954 0.95001 0.86278 0.81013 0.80022 0.70225 0.85739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 9.96 71.98 0.72 -2.45 16 2 C 0.05 1.74 5.51 86.30 0.48 2.22 16 3 N -0.53 -20.48 4.34 -905.37 -3.93 -24.42 16 4 C 0.20 10.36 4.54 85.56 0.39 10.75 16 5 C -0.52 -28.55 8.23 25.60 0.21 -28.34 16 6 H 0.07 3.53 7.31 -2.91 -0.02 3.51 16 7 C 0.00 0.00 5.46 84.66 0.46 0.46 16 8 N -0.94 -56.88 13.29 21.45 0.28 -56.59 16 9 Si 0.96 44.38 29.54 68.60 2.03 46.40 16 10 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 13 C 0.08 2.47 4.94 85.56 0.42 2.90 16 14 C 0.00 -0.03 5.04 -19.82 -0.10 -0.13 16 15 C -0.11 -2.62 9.70 22.23 0.22 -2.40 16 16 C -0.02 -0.42 9.61 22.53 0.22 -0.20 16 17 C -0.19 -5.52 5.88 -20.06 -0.12 -5.64 16 18 C 0.54 14.97 8.27 70.28 0.58 15.55 16 19 O -0.55 -19.56 16.13 19.87 0.32 -19.24 16 20 O -0.49 -8.53 12.68 -56.42 -0.72 -9.24 16 21 C 0.14 4.84 7.29 22.69 0.17 5.01 16 22 F -0.14 -5.59 15.55 44.97 0.70 -4.89 16 23 C -0.17 -5.94 8.35 22.28 0.19 -5.75 16 24 H 0.07 1.32 6.89 -2.39 -0.02 1.30 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.06 2.31 6.58 -2.39 -0.02 2.30 16 28 H 0.03 0.82 8.00 -2.39 -0.02 0.80 16 29 H 0.01 0.63 6.32 -2.39 -0.02 0.61 16 30 H -0.04 -2.32 8.12 -2.39 -0.02 -2.34 16 31 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 32 H 0.03 1.04 7.90 -2.38 -0.02 1.02 16 33 H 0.12 2.67 6.54 -2.39 -0.02 2.65 16 34 H 0.17 2.81 8.06 -2.91 -0.02 2.79 16 35 H 0.18 2.62 7.61 -2.91 -0.02 2.60 16 36 H 0.44 3.42 9.11 -74.06 -0.67 2.74 16 37 H 0.12 4.73 7.98 -2.91 -0.02 4.70 16 Total: -1.00 -73.94 320.64 2.93 -71.01 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: 0.43 Total: 5.02 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: 3.82 Total: -8.04 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -3.65 Total: -81.01 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.40 Total: -28.48 kcal Atomic # 9 Polarization: -5.59 SS G_CDS: 0.70 Total: -4.89 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -73.94 2.93 -71.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233436245.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.434 kcal (2) G-P(sol) polarization free energy of solvation -73.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds