Wall clock time and date at job start Tue Mar 31 2020 05:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 117.00164 * 2 1 4 4 C 1.38774 * 120.04074 * 0.02562 * 3 2 1 5 5 C 1.38136 * 119.99401 * 179.69923 * 4 3 2 6 6 C 1.38258 * 120.07805 * 0.53480 * 5 4 3 7 7 C 1.50699 * 119.95736 * 179.76478 * 6 5 4 8 8 C 1.50706 * 109.46817 * 264.72470 * 7 6 5 9 9 O 1.21274 * 120.00042 * 359.72211 * 8 7 6 10 10 N 1.34777 * 119.99766 * 179.97438 * 8 7 6 11 11 C 1.46504 * 119.99854 * 0.02562 * 10 8 7 12 12 C 1.46496 * 120.00266 * 179.97438 * 10 8 7 13 13 C 1.50703 * 109.47077 * 90.00076 * 12 10 8 14 14 H 1.08005 * 119.99703 * 0.02562 * 13 12 10 15 15 C 1.37872 * 120.00292 * 180.02562 * 13 12 10 16 16 N 1.31509 * 120.00314 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99869 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47168 * 90.00127 * 17 15 13 19 19 H 1.48497 * 109.46932 * 210.00102 * 17 15 13 20 20 H 1.48501 * 109.47042 * 330.00023 * 17 15 13 21 21 C 1.38472 * 120.08518 * 359.48923 * 6 5 4 22 22 F 1.35101 * 120.00059 * 180.25471 * 21 6 5 23 23 C 1.38396 * 120.00414 * 0.23040 * 21 6 5 24 24 H 1.09003 * 109.47272 * 300.00856 * 1 2 3 25 25 H 1.09001 * 109.46713 * 60.00022 * 1 2 3 26 26 H 1.08992 * 109.47123 * 180.02562 * 1 2 3 27 27 H 1.07995 * 120.00657 * 359.97438 * 4 3 2 28 28 H 1.07996 * 119.96385 * 180.29757 * 5 4 3 29 29 H 1.09000 * 109.47247 * 144.72533 * 7 6 5 30 30 H 1.09001 * 109.47358 * 24.71959 * 7 6 5 31 31 H 1.09002 * 109.47335 * 89.99996 * 11 10 8 32 32 H 1.09001 * 109.47076 * 209.99400 * 11 10 8 33 33 H 1.08996 * 109.47068 * 329.99428 * 11 10 8 34 34 H 1.08997 * 109.47682 * 210.00272 * 12 10 8 35 35 H 1.09004 * 109.47271 * 330.00368 * 12 10 8 36 36 H 0.96999 * 120.00320 * 179.97438 * 16 15 13 37 37 H 1.08004 * 120.03870 * 180.02562 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2911 2.3753 0.0005 5 6 1.9192 3.6055 0.0068 6 6 3.2998 3.6786 0.0014 7 6 3.9823 5.0223 0.0029 8 6 4.3204 5.4155 -1.4121 9 8 4.0399 4.6751 -2.3307 10 7 4.9392 6.5876 -1.6562 11 6 5.2836 7.4793 -0.5459 12 6 5.2684 6.9697 -3.0316 13 6 4.1191 7.7412 -3.6274 14 1 3.2323 7.9285 -3.0401 15 6 4.1997 8.2078 -4.9223 16 7 3.1969 8.8815 -5.4421 17 14 5.7332 7.8832 -5.9383 18 1 5.5782 6.6022 -6.6732 19 1 5.9274 8.9903 -6.9089 20 1 6.9132 7.7992 -5.0406 21 6 4.0564 2.5189 0.0004 22 9 5.4054 2.5923 0.0003 23 6 3.4307 1.2844 -0.0001 24 1 -0.3634 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 0.2125 2.3197 0.0005 28 1 1.3312 4.5114 0.0121 29 1 4.8973 4.9644 0.5925 30 1 3.3163 5.7676 0.4378 31 1 6.2819 7.2370 -0.1815 32 1 5.2636 8.5131 -0.8905 33 1 4.5614 7.3511 0.2604 34 1 6.1629 7.5926 -3.0315 35 1 5.4502 6.0731 -3.6242 36 1 3.2538 9.2101 -6.3529 37 1 4.0202 0.3795 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259555472.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:01 Heat of formation + Delta-G solvation = -86.640928 kcal Electronic energy + Delta-G solvation = -21721.079813 eV Core-core repulsion = 18185.788082 eV Total energy + Delta-G solvation = -3535.291731 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.83286 -40.22259 -39.09134 -37.31653 -34.87003 -32.70785 -32.13452 -30.74095 -28.87323 -27.87030 -26.55243 -25.63179 -23.00418 -22.50617 -21.27615 -18.64116 -18.38002 -17.09020 -16.88564 -16.49561 -16.08027 -15.94109 -15.76309 -15.26175 -14.98865 -14.84113 -14.47071 -13.91720 -13.67752 -12.96754 -12.89281 -12.73243 -12.45979 -12.39335 -12.31938 -11.99851 -11.76439 -11.63899 -11.39060 -11.02836 -11.00548 -10.85113 -10.49787 -10.12784 -9.53562 -9.06329 -8.86324 -8.57859 -8.16963 -7.67878 -6.08045 -4.06584 1.15259 1.25419 2.98903 3.30610 3.36508 3.37451 3.39007 3.49345 3.97354 4.40712 4.41068 4.63629 4.74408 4.83582 4.92080 4.95424 5.16870 5.21701 5.24594 5.28864 5.31937 5.50647 5.60465 5.70153 5.87464 5.97386 5.98560 6.16965 6.19055 6.37763 6.64656 6.72862 6.97348 7.19657 7.35739 7.62365 8.26239 8.47997 8.93500 9.00892 9.52662 11.05356 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022116 B = 0.004203 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.729454 B = 6660.047970 C = 7079.016470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.150 3.850 4 C -0.216 4.216 5 C -0.038 4.038 6 C -0.125 4.125 7 C -0.099 4.099 8 C 0.509 3.491 9 O -0.533 6.533 10 N -0.599 5.599 11 C 0.082 3.918 12 C 0.215 3.785 13 C -0.528 4.528 14 H 0.074 0.926 15 C 0.072 3.928 16 N -0.898 5.898 17 Si 0.876 3.124 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.266 1.266 21 C 0.153 3.847 22 F -0.131 7.131 23 C -0.190 4.190 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.100 0.900 27 H 0.134 0.866 28 H 0.136 0.864 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.030 0.970 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.231 -12.415 16.014 20.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.104 3.896 4 C -0.234 4.234 5 C -0.056 4.056 6 C -0.127 4.127 7 C -0.139 4.139 8 C 0.295 3.705 9 O -0.410 6.410 10 N -0.332 5.332 11 C -0.062 4.062 12 C 0.095 3.905 13 C -0.567 4.567 14 H 0.092 0.908 15 C -0.130 4.130 16 N -0.537 5.537 17 Si 0.703 3.297 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.190 1.190 21 C 0.134 3.866 22 F -0.110 7.110 23 C -0.209 4.209 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.118 0.882 27 H 0.151 0.849 28 H 0.154 0.846 29 H 0.116 0.884 30 H 0.121 0.879 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.290 -12.887 15.339 20.164 hybrid contribution 0.659 0.210 -0.693 0.979 sum -1.631 -12.677 14.646 19.439 Atomic orbital electron populations 1.23090 0.78081 1.03966 1.01684 1.86045 1.21606 1.26666 1.88610 1.18542 0.91336 0.84334 0.95376 1.21206 1.00307 0.91957 1.09974 1.20687 0.92760 0.97684 0.94441 1.19321 0.93951 0.93383 1.05996 1.20613 1.01989 0.94363 0.96904 1.20173 0.78529 0.81724 0.90099 1.90684 1.52657 1.51563 1.46060 1.47823 1.58236 1.18216 1.08877 1.21681 0.99146 0.95819 0.89507 1.19660 0.96535 0.96081 0.78240 1.21333 1.02468 1.34000 0.98867 0.90795 1.24851 0.96275 0.94547 0.97331 1.69892 1.31141 1.37275 1.15387 0.86849 0.83843 0.78347 0.80661 1.19898 1.21055 1.19038 1.17024 0.76831 0.93071 0.99691 1.91496 1.28907 1.97092 1.93481 1.20110 0.92511 0.97339 1.10952 0.92496 0.92288 0.88206 0.84865 0.84620 0.88372 0.87890 0.93588 0.90527 0.92108 0.95220 0.94578 0.92579 0.84119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.68 10.50 -19.42 -0.20 -3.88 16 3 C 0.15 1.96 6.68 -39.23 -0.26 1.70 16 4 C -0.22 -2.64 9.04 -39.42 -0.36 -3.00 16 5 C -0.04 -0.51 9.67 -39.61 -0.38 -0.89 16 6 C -0.12 -1.91 4.38 -104.53 -0.46 -2.37 16 7 C -0.10 -1.48 4.15 -29.03 -0.12 -1.60 16 8 C 0.51 10.61 7.67 -10.98 -0.08 10.52 16 9 O -0.53 -13.56 15.61 5.56 0.09 -13.47 16 10 N -0.60 -12.57 2.86 -182.95 -0.52 -13.09 16 11 C 0.08 1.26 10.24 59.85 0.61 1.87 16 12 C 0.22 5.39 4.23 -5.19 -0.02 5.37 16 13 C -0.53 -15.36 9.94 -34.44 -0.34 -15.70 16 14 H 0.07 2.34 8.06 -52.48 -0.42 1.92 16 15 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 16 N -0.90 -27.89 13.96 55.43 0.77 -27.12 16 17 Si 0.88 21.90 27.47 -169.99 -4.67 17.24 16 18 H -0.27 -6.91 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 20 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 21 C 0.15 2.38 7.24 -39.44 -0.29 2.09 16 22 F -0.13 -2.12 16.56 2.25 0.04 -2.08 16 23 C -0.19 -2.66 9.97 -39.37 -0.39 -3.05 16 24 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 25 H 0.06 0.42 7.66 -51.93 -0.40 0.03 16 26 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.13 1.25 6.30 -52.49 -0.33 0.92 16 28 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 29 H 0.10 1.26 7.75 -51.93 -0.40 0.86 16 30 H 0.10 1.26 7.31 -51.93 -0.38 0.88 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 33 H 0.06 0.74 6.44 -51.93 -0.33 0.41 16 34 H 0.03 0.71 7.13 -51.93 -0.37 0.33 16 35 H 0.04 0.97 6.84 -51.93 -0.36 0.62 16 36 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 37 H 0.14 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 320.13 15.07 4.82 4.82 Total: -1.00 -36.04 320.13 -5.54 -41.58 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -4.67 Total: -2.16 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -1.20 Total: -1.83 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.25 Total: -40.21 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.12 Total: -17.36 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -36.04 -5.54 -41.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259555472.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.062 kcal (2) G-P(sol) polarization free energy of solvation -36.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds