Wall clock time and date at job start Tue Mar 31 2020 05:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 117.00164 * 2 1 4 4 C 1.38774 * 120.04074 * 0.02562 * 3 2 1 5 5 C 1.38136 * 119.99401 * 179.69923 * 4 3 2 6 6 C 1.38258 * 120.07805 * 0.53480 * 5 4 3 7 7 C 1.50699 * 119.95736 * 179.76478 * 6 5 4 8 8 C 1.50706 * 109.46817 * 264.72470 * 7 6 5 9 9 O 1.21274 * 120.00042 * 359.72211 * 8 7 6 10 10 N 1.34777 * 119.99766 * 179.97438 * 8 7 6 11 11 C 1.46504 * 119.99854 * 0.02562 * 10 8 7 12 12 C 1.46496 * 120.00266 * 179.97438 * 10 8 7 13 13 C 1.50703 * 109.47077 * 90.00076 * 12 10 8 14 14 H 1.08005 * 119.99703 * 0.02562 * 13 12 10 15 15 C 1.37872 * 120.00292 * 180.02562 * 13 12 10 16 16 N 1.31509 * 120.00314 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99869 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47168 * 90.00127 * 17 15 13 19 19 H 1.48497 * 109.46932 * 210.00102 * 17 15 13 20 20 H 1.48501 * 109.47042 * 330.00023 * 17 15 13 21 21 C 1.38472 * 120.08518 * 359.48923 * 6 5 4 22 22 F 1.35101 * 120.00059 * 180.25471 * 21 6 5 23 23 C 1.38396 * 120.00414 * 0.23040 * 21 6 5 24 24 H 1.09003 * 109.47272 * 300.00856 * 1 2 3 25 25 H 1.09001 * 109.46713 * 60.00022 * 1 2 3 26 26 H 1.08992 * 109.47123 * 180.02562 * 1 2 3 27 27 H 1.07995 * 120.00657 * 359.97438 * 4 3 2 28 28 H 1.07996 * 119.96385 * 180.29757 * 5 4 3 29 29 H 1.09000 * 109.47247 * 144.72533 * 7 6 5 30 30 H 1.09001 * 109.47358 * 24.71959 * 7 6 5 31 31 H 1.09002 * 109.47335 * 89.99996 * 11 10 8 32 32 H 1.09001 * 109.47076 * 209.99400 * 11 10 8 33 33 H 1.08996 * 109.47068 * 329.99428 * 11 10 8 34 34 H 1.08997 * 109.47682 * 210.00272 * 12 10 8 35 35 H 1.09004 * 109.47271 * 330.00368 * 12 10 8 36 36 H 0.96999 * 120.00320 * 179.97438 * 16 15 13 37 37 H 1.08004 * 120.03870 * 180.02562 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2911 2.3753 0.0005 5 6 1.9192 3.6055 0.0068 6 6 3.2998 3.6786 0.0014 7 6 3.9823 5.0223 0.0029 8 6 4.3204 5.4155 -1.4121 9 8 4.0399 4.6751 -2.3307 10 7 4.9392 6.5876 -1.6562 11 6 5.2836 7.4793 -0.5459 12 6 5.2684 6.9697 -3.0316 13 6 4.1191 7.7412 -3.6274 14 1 3.2323 7.9285 -3.0401 15 6 4.1997 8.2078 -4.9223 16 7 3.1969 8.8815 -5.4421 17 14 5.7332 7.8832 -5.9383 18 1 5.5782 6.6022 -6.6732 19 1 5.9274 8.9903 -6.9089 20 1 6.9132 7.7992 -5.0406 21 6 4.0564 2.5189 0.0004 22 9 5.4054 2.5923 0.0003 23 6 3.4307 1.2844 -0.0001 24 1 -0.3634 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 0.2125 2.3197 0.0005 28 1 1.3312 4.5114 0.0121 29 1 4.8973 4.9644 0.5925 30 1 3.3163 5.7676 0.4378 31 1 6.2819 7.2370 -0.1815 32 1 5.2636 8.5131 -0.8905 33 1 4.5614 7.3511 0.2604 34 1 6.1629 7.5926 -3.0315 35 1 5.4502 6.0731 -3.6242 36 1 3.2538 9.2101 -6.3529 37 1 4.0202 0.3795 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259555472.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:01 Heat of formation + Delta-G solvation = -111.243633 kcal Electronic energy + Delta-G solvation = -21722.146667 eV Core-core repulsion = 18185.788082 eV Total energy + Delta-G solvation = -3536.358584 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.99799 -41.24533 -40.55063 -38.35099 -36.58881 -34.73914 -33.43787 -31.77783 -30.61851 -28.83448 -27.63851 -27.08909 -24.46923 -23.87435 -22.50349 -20.06569 -19.46693 -19.14942 -18.06390 -17.96450 -17.30484 -17.03350 -16.83838 -16.50986 -16.35304 -16.22926 -15.71525 -15.54858 -14.79126 -14.61041 -14.33478 -14.04948 -13.82131 -13.64502 -13.37492 -13.29985 -13.23916 -12.91116 -12.68567 -12.63246 -12.39305 -12.03741 -11.92503 -11.89200 -11.74793 -10.84022 -10.71116 -9.91342 -9.38559 -9.20607 -8.34857 -6.39383 0.10280 0.20758 1.31541 1.35667 1.43922 1.81446 2.15425 2.28298 2.30265 2.63210 2.99690 3.35771 3.61194 3.68401 3.89270 3.92584 4.18705 4.26066 4.37918 4.41758 4.43698 4.52594 4.59904 4.68152 4.75877 4.81793 4.91705 4.97581 4.98507 5.01706 5.18795 5.32880 5.45415 5.62033 5.65419 6.23621 6.31394 6.61447 6.70240 7.21377 7.42989 8.81918 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022116 B = 0.004203 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.729454 B = 6660.047970 C = 7079.016470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.328 6.328 3 C 0.149 3.851 4 C -0.212 4.212 5 C -0.045 4.045 6 C -0.147 4.147 7 C -0.085 4.085 8 C 0.498 3.502 9 O -0.591 6.591 10 N -0.609 5.609 11 C 0.074 3.926 12 C 0.223 3.777 13 C -0.535 4.535 14 H 0.032 0.968 15 C 0.013 3.987 16 N -0.944 5.944 17 Si 0.945 3.055 18 H -0.279 1.279 19 H -0.273 1.273 20 H -0.240 1.240 21 C 0.132 3.868 22 F -0.141 7.141 23 C -0.203 4.203 24 H 0.074 0.926 25 H 0.062 0.938 26 H 0.123 0.877 27 H 0.163 0.837 28 H 0.152 0.848 29 H 0.123 0.877 30 H 0.134 0.866 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.050 0.950 35 H 0.014 0.986 36 H 0.268 0.732 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.820 -12.859 17.457 21.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.242 6.242 3 C 0.103 3.897 4 C -0.230 4.230 5 C -0.063 4.063 6 C -0.148 4.148 7 C -0.124 4.124 8 C 0.287 3.713 9 O -0.471 6.471 10 N -0.340 5.340 11 C -0.067 4.067 12 C 0.100 3.900 13 C -0.573 4.573 14 H 0.050 0.950 15 C -0.185 4.185 16 N -0.584 5.584 17 Si 0.768 3.232 18 H -0.205 1.205 19 H -0.198 1.198 20 H -0.163 1.163 21 C 0.113 3.887 22 F -0.120 7.120 23 C -0.222 4.222 24 H 0.092 0.908 25 H 0.080 0.920 26 H 0.141 0.859 27 H 0.181 0.819 28 H 0.170 0.830 29 H 0.141 0.859 30 H 0.152 0.848 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.067 0.933 35 H 0.032 0.968 36 H 0.077 0.923 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.871 -13.311 16.846 21.551 hybrid contribution 0.371 0.287 -1.090 1.187 sum -1.500 -13.024 15.756 20.497 Atomic orbital electron populations 1.23441 0.75823 1.05954 1.02645 1.86042 1.23935 1.25971 1.88237 1.18672 0.91220 0.85261 0.94597 1.21540 1.01818 0.91177 1.08505 1.20995 0.92408 0.98945 0.93995 1.19495 0.94788 0.93324 1.07233 1.20601 1.03824 0.95065 0.92910 1.21237 0.77133 0.80880 0.92075 1.90644 1.54838 1.53268 1.48394 1.47970 1.58153 1.19302 1.08603 1.22022 1.01989 0.94218 0.88514 1.19322 0.95491 0.94576 0.80576 1.21559 1.02445 1.34349 0.98992 0.94963 1.25806 0.99892 0.94167 0.98674 1.70034 1.33616 1.38661 1.16094 0.85758 0.80303 0.78004 0.79159 1.20459 1.19764 1.16282 1.17281 0.76603 0.93927 1.00906 1.91458 1.29601 1.97188 1.93740 1.20300 0.93431 0.97284 1.11199 0.90782 0.91973 0.85895 0.81940 0.83001 0.85905 0.84785 0.90445 0.91418 0.88665 0.93255 0.96807 0.92253 0.83357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -7.11 10.50 -92.40 -0.97 -8.08 16 3 C 0.15 3.71 6.68 22.50 0.15 3.86 16 4 C -0.21 -4.80 9.04 22.37 0.20 -4.60 16 5 C -0.05 -1.16 9.67 22.25 0.22 -0.95 16 6 C -0.15 -4.34 4.38 -19.80 -0.09 -4.43 16 7 C -0.08 -2.37 4.15 29.10 0.12 -2.25 16 8 C 0.50 20.56 7.67 87.66 0.67 21.23 16 9 O -0.59 -30.74 15.61 -3.01 -0.05 -30.79 16 10 N -0.61 -25.02 2.86 -851.13 -2.43 -27.45 16 11 C 0.07 2.07 10.24 127.77 1.31 3.38 16 12 C 0.22 11.12 4.23 85.63 0.36 11.48 16 13 C -0.53 -31.80 9.94 25.60 0.25 -31.55 16 14 H 0.03 2.12 8.06 -2.91 -0.02 2.09 16 15 C 0.01 0.76 5.47 84.65 0.46 1.22 16 16 N -0.94 -59.94 13.96 21.44 0.30 -59.64 16 17 Si 0.94 45.23 27.47 68.60 1.88 47.11 16 18 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 19 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 20 H -0.24 -10.37 6.54 99.48 0.65 -9.72 16 21 C 0.13 4.08 7.24 22.36 0.16 4.24 16 22 F -0.14 -4.56 16.56 44.97 0.74 -3.81 16 23 C -0.20 -5.64 9.97 22.41 0.22 -5.41 16 24 H 0.07 0.68 7.66 -2.39 -0.02 0.66 16 25 H 0.06 0.74 7.66 -2.39 -0.02 0.73 16 26 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.16 2.58 6.30 -2.91 -0.02 2.57 16 28 H 0.15 3.27 8.06 -2.91 -0.02 3.24 16 29 H 0.12 2.82 7.75 -2.39 -0.02 2.80 16 30 H 0.13 2.86 7.31 -2.39 -0.02 2.85 16 31 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.07 2.01 8.07 -2.39 -0.02 1.99 16 33 H 0.09 1.98 6.44 -2.39 -0.02 1.97 16 34 H 0.05 2.26 7.13 -2.39 -0.02 2.24 16 35 H 0.01 0.75 6.84 -2.38 -0.02 0.74 16 36 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 37 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -81.83 320.13 5.67 -76.16 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 1.03 Total: 8.96 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 5.16 Total: -2.46 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: -2.13 Total: -87.09 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: -1.02 Total: -38.87 kcal Atomic # 9 Polarization: -4.56 SS G_CDS: 0.74 Total: -3.81 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.88 Total: 47.11 kcal Total: -81.83 5.67 -76.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259555472.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.080 kcal (2) G-P(sol) polarization free energy of solvation -81.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds