Wall clock time and date at job start Tue Mar 31 2020 05:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35948 * 117.00499 * 2 1 4 4 C 1.38664 * 120.06477 * 359.72167 * 3 2 1 5 5 C 1.38176 * 119.97332 * 180.28026 * 4 3 2 6 6 C 1.38263 * 120.09586 * 359.97378 * 5 4 3 7 7 C 1.50702 * 119.93682 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.46958 * 270.02149 * 7 6 5 9 9 C 1.50702 * 109.47338 * 180.02562 * 8 7 6 10 10 O 1.21285 * 119.99228 * 0.02562 * 9 8 7 11 11 N 1.34767 * 120.00401 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00202 * 180.02562 * 11 9 8 13 13 C 1.50704 * 109.47392 * 179.97438 * 12 11 9 14 14 H 1.08001 * 119.99923 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00019 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99824 * 180.02562 * 15 13 12 17 17 Si 1.86806 * 120.00100 * 0.02562 * 15 13 12 18 18 H 1.48493 * 109.46886 * 89.99963 * 17 15 13 19 19 H 1.48497 * 109.46714 * 209.99686 * 17 15 13 20 20 H 1.48503 * 109.46853 * 329.99755 * 17 15 13 21 21 C 1.38254 * 120.12337 * 0.04707 * 6 5 4 22 22 C 1.38326 * 120.03416 * 359.95854 * 21 6 5 23 23 F 1.35098 * 120.05006 * 179.97438 * 22 21 6 24 24 H 1.09001 * 109.46836 * 300.00713 * 1 2 3 25 25 H 1.09001 * 109.46915 * 60.00028 * 1 2 3 26 26 H 1.08996 * 109.47572 * 179.97438 * 1 2 3 27 27 H 1.08008 * 120.01117 * 0.25210 * 4 3 2 28 28 H 1.07999 * 119.95322 * 179.97438 * 5 4 3 29 29 H 1.08994 * 109.47166 * 30.02267 * 7 6 5 30 30 H 1.08994 * 109.46843 * 150.02522 * 7 6 5 31 31 H 1.08999 * 109.47719 * 300.00206 * 8 7 6 32 32 H 1.09007 * 109.47228 * 60.00357 * 8 7 6 33 33 H 0.97001 * 120.00529 * 359.97438 * 11 9 8 34 34 H 1.09001 * 109.47355 * 299.99571 * 12 11 9 35 35 H 1.09001 * 109.47445 * 59.99947 * 12 11 9 36 36 H 0.97007 * 120.00039 * 180.02562 * 16 15 13 37 37 H 1.08004 * 119.98065 * 179.97438 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2925 2.3751 -0.0058 5 6 1.9219 3.6052 -0.0117 6 6 3.3026 3.6775 -0.0112 7 6 3.9853 5.0210 -0.0170 8 6 4.2167 5.4692 -1.4614 9 6 4.9000 6.8124 -1.4673 10 8 5.1752 7.3572 -0.4192 11 7 5.2052 7.4081 -2.6370 12 6 5.8699 8.7136 -2.6427 13 6 6.0978 9.1552 -4.0654 14 1 5.7789 8.5264 -4.8836 15 6 6.7124 10.3623 -4.3226 16 7 6.9108 10.7478 -5.5642 17 14 7.2633 11.4501 -2.9074 18 1 8.6571 11.1035 -2.5302 19 1 7.2030 12.8739 -3.3251 20 1 6.3676 11.2377 -1.7421 21 6 4.0580 2.5196 -0.0058 22 6 3.4334 1.2855 -0.0001 23 9 4.1713 0.1538 0.0047 24 1 -0.3633 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2138 2.3201 -0.0063 28 1 1.3344 4.5114 -0.0166 29 1 3.3564 5.7503 0.4934 30 1 4.9431 4.9440 0.4974 31 1 4.8456 4.7399 -1.9719 32 1 3.2588 5.5462 -1.9759 33 1 4.9855 6.9722 -3.4752 34 1 5.2420 9.4433 -2.1316 35 1 6.8282 8.6357 -2.1290 36 1 7.3435 11.5969 -5.7451 37 1 5.1365 2.5788 -0.0058 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259589447.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:58 Heat of formation + Delta-G solvation = -109.091382 kcal Electronic energy + Delta-G solvation = -20599.508784 eV Core-core repulsion = 17063.243529 eV Total energy + Delta-G solvation = -3536.265256 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.95966 -40.37195 -39.11319 -37.99144 -34.39621 -33.47840 -32.35579 -31.01124 -29.79768 -28.16893 -27.34965 -24.48434 -23.05510 -22.07683 -21.13488 -19.78823 -18.61211 -17.40550 -17.21207 -16.88153 -16.44109 -15.95268 -15.32612 -15.26839 -15.22927 -15.07928 -14.53642 -14.36011 -14.02430 -13.53697 -13.13168 -12.91478 -12.74332 -12.50842 -12.31895 -12.15244 -11.98297 -11.67175 -11.39318 -11.20500 -10.99385 -10.96228 -10.76976 -9.98628 -9.51164 -9.28448 -9.17691 -8.79264 -8.35838 -8.16667 -6.22768 -4.25149 0.85530 0.94561 2.79434 3.21267 3.24624 3.26449 3.32568 3.40590 3.91184 4.02014 4.32151 4.37833 4.51760 4.68574 4.74123 4.86680 4.96529 5.06057 5.10201 5.12199 5.16353 5.24525 5.42221 5.63661 5.73504 5.75067 5.82787 5.92901 6.13608 6.34831 6.37472 6.79489 6.94447 7.05669 7.20898 7.38193 8.11764 8.50456 8.73685 8.91848 9.37375 10.89172 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.038189 B = 0.002627 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.015239 B =10656.560873 C =10684.776142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.086 3.914 4 C -0.179 4.179 5 C -0.085 4.085 6 C -0.083 4.083 7 C -0.062 4.062 8 C -0.136 4.136 9 C 0.498 3.502 10 O -0.561 6.561 11 N -0.706 5.706 12 C 0.219 3.781 13 C -0.544 4.544 14 H 0.079 0.921 15 C 0.077 3.923 16 N -0.892 5.892 17 Si 0.877 3.123 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.261 1.261 21 C -0.112 4.112 22 C 0.071 3.929 23 F -0.134 7.134 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.101 0.899 27 H 0.137 0.863 28 H 0.134 0.866 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.397 0.603 34 H 0.025 0.975 35 H 0.020 0.980 36 H 0.268 0.732 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.346 -19.771 10.881 26.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C 0.040 3.960 4 C -0.198 4.198 5 C -0.103 4.103 6 C -0.084 4.084 7 C -0.100 4.100 8 C -0.176 4.176 9 C 0.284 3.716 10 O -0.441 6.441 11 N -0.354 5.354 12 C 0.097 3.903 13 C -0.582 4.582 14 H 0.097 0.903 15 C -0.127 4.127 16 N -0.530 5.530 17 Si 0.704 3.296 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.185 1.185 21 C -0.131 4.131 22 C 0.051 3.949 23 F -0.112 7.112 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.120 0.880 27 H 0.155 0.845 28 H 0.152 0.848 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.231 0.769 34 H 0.043 0.957 35 H 0.038 0.962 36 H 0.077 0.923 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.953 -19.440 11.486 26.032 hybrid contribution 0.093 0.335 0.056 0.352 sum -12.860 -19.106 11.541 25.761 Atomic orbital electron populations 1.23107 0.77969 1.04214 1.01538 1.86125 1.21686 1.25914 1.88868 1.19002 0.90823 0.85622 1.00524 1.21132 1.00241 0.91436 1.06986 1.20984 0.94021 0.97368 0.97963 1.19768 0.93334 0.95012 1.00250 1.20305 1.01609 0.91810 0.96226 1.21662 1.02144 0.95598 0.98239 1.20547 0.79669 0.87030 0.84379 1.90652 1.55276 1.66401 1.31746 1.46213 1.59390 1.22384 1.07458 1.19491 0.92416 0.80188 0.98193 1.21102 1.40963 1.05615 0.90520 0.90261 1.24809 0.94764 0.97311 0.95800 1.69883 1.42297 1.22198 1.18588 0.86806 0.79993 0.79857 0.82969 1.19844 1.20905 1.18509 1.20983 1.01268 0.89645 1.01201 1.16961 0.85911 0.82987 1.09069 1.91498 1.76424 1.49035 1.94290 0.92450 0.92379 0.88020 0.84513 0.84768 0.89772 0.89862 0.89060 0.89065 0.76950 0.95732 0.96186 0.92253 0.83810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.18 10.36 -19.58 -0.20 -3.39 16 3 C 0.09 0.91 6.69 -39.17 -0.26 0.65 16 4 C -0.18 -1.54 9.04 -39.45 -0.36 -1.89 16 5 C -0.09 -0.76 9.69 -39.60 -0.38 -1.14 16 6 C -0.08 -0.84 5.13 -104.61 -0.54 -1.38 16 7 C -0.06 -0.70 4.63 -27.88 -0.13 -0.83 16 8 C -0.14 -1.67 5.68 -27.88 -0.16 -1.83 16 9 C 0.50 8.96 7.83 -10.99 -0.09 8.88 16 10 O -0.56 -12.18 15.98 5.55 0.09 -12.09 16 11 N -0.71 -13.92 5.55 -61.47 -0.34 -14.26 16 12 C 0.22 5.34 4.50 -5.19 -0.02 5.32 16 13 C -0.54 -14.84 9.83 -34.44 -0.34 -15.18 16 14 H 0.08 2.25 7.84 -52.49 -0.41 1.83 16 15 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 16 N -0.89 -26.41 13.96 55.43 0.77 -25.64 16 17 Si 0.88 21.34 27.47 -169.99 -4.67 16.68 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 20 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 21 C -0.11 -1.17 9.67 -39.54 -0.38 -1.56 16 22 C 0.07 0.82 7.31 -39.30 -0.29 0.53 16 23 F -0.13 -1.72 17.11 2.25 0.04 -1.68 16 24 H 0.06 0.25 7.67 -51.93 -0.40 -0.15 16 25 H 0.06 0.26 7.65 -51.93 -0.40 -0.14 16 26 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.14 0.81 6.30 -52.48 -0.33 0.48 16 28 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 29 H 0.08 0.99 8.04 -51.93 -0.42 0.57 16 30 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 31 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.09 0.96 8.14 -51.92 -0.42 0.53 16 33 H 0.40 6.85 8.32 -40.82 -0.34 6.51 16 34 H 0.02 0.63 7.20 -51.93 -0.37 0.26 16 35 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 36 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.14 1.33 8.06 -52.48 -0.42 0.91 16 LS Contribution 323.97 15.07 4.88 4.88 Total: -1.00 -33.25 323.97 -6.24 -39.49 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -4.76 Total: 1.23 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -2.05 Total: -5.22 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.43 Total: -39.90 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.11 Total: -15.48 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.25 -6.24 -39.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259589447.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.603 kcal (2) G-P(sol) polarization free energy of solvation -33.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds