Wall clock time and date at job start Tue Mar 31 2020 05:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35948 * 117.00499 * 2 1 4 4 C 1.38664 * 120.06477 * 359.72167 * 3 2 1 5 5 C 1.38176 * 119.97332 * 180.28026 * 4 3 2 6 6 C 1.38263 * 120.09586 * 359.97378 * 5 4 3 7 7 C 1.50702 * 119.93682 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.46958 * 270.02149 * 7 6 5 9 9 C 1.50702 * 109.47338 * 180.02562 * 8 7 6 10 10 O 1.21285 * 119.99228 * 0.02562 * 9 8 7 11 11 N 1.34767 * 120.00401 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00202 * 180.02562 * 11 9 8 13 13 C 1.50704 * 109.47392 * 179.97438 * 12 11 9 14 14 H 1.08001 * 119.99923 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00019 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99824 * 180.02562 * 15 13 12 17 17 Si 1.86806 * 120.00100 * 0.02562 * 15 13 12 18 18 H 1.48493 * 109.46886 * 89.99963 * 17 15 13 19 19 H 1.48497 * 109.46714 * 209.99686 * 17 15 13 20 20 H 1.48503 * 109.46853 * 329.99755 * 17 15 13 21 21 C 1.38254 * 120.12337 * 0.04707 * 6 5 4 22 22 C 1.38326 * 120.03416 * 359.95854 * 21 6 5 23 23 F 1.35098 * 120.05006 * 179.97438 * 22 21 6 24 24 H 1.09001 * 109.46836 * 300.00713 * 1 2 3 25 25 H 1.09001 * 109.46915 * 60.00028 * 1 2 3 26 26 H 1.08996 * 109.47572 * 179.97438 * 1 2 3 27 27 H 1.08008 * 120.01117 * 0.25210 * 4 3 2 28 28 H 1.07999 * 119.95322 * 179.97438 * 5 4 3 29 29 H 1.08994 * 109.47166 * 30.02267 * 7 6 5 30 30 H 1.08994 * 109.46843 * 150.02522 * 7 6 5 31 31 H 1.08999 * 109.47719 * 300.00206 * 8 7 6 32 32 H 1.09007 * 109.47228 * 60.00357 * 8 7 6 33 33 H 0.97001 * 120.00529 * 359.97438 * 11 9 8 34 34 H 1.09001 * 109.47355 * 299.99571 * 12 11 9 35 35 H 1.09001 * 109.47445 * 59.99947 * 12 11 9 36 36 H 0.97007 * 120.00039 * 180.02562 * 16 15 13 37 37 H 1.08004 * 119.98065 * 179.97438 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2925 2.3751 -0.0058 5 6 1.9219 3.6052 -0.0117 6 6 3.3026 3.6775 -0.0112 7 6 3.9853 5.0210 -0.0170 8 6 4.2167 5.4692 -1.4614 9 6 4.9000 6.8124 -1.4673 10 8 5.1752 7.3572 -0.4192 11 7 5.2052 7.4081 -2.6370 12 6 5.8699 8.7136 -2.6427 13 6 6.0978 9.1552 -4.0654 14 1 5.7789 8.5264 -4.8836 15 6 6.7124 10.3623 -4.3226 16 7 6.9108 10.7478 -5.5642 17 14 7.2633 11.4501 -2.9074 18 1 8.6571 11.1035 -2.5302 19 1 7.2030 12.8739 -3.3251 20 1 6.3676 11.2377 -1.7421 21 6 4.0580 2.5196 -0.0058 22 6 3.4334 1.2855 -0.0001 23 9 4.1713 0.1538 0.0047 24 1 -0.3633 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2138 2.3201 -0.0063 28 1 1.3344 4.5114 -0.0166 29 1 3.3564 5.7503 0.4934 30 1 4.9431 4.9440 0.4974 31 1 4.8456 4.7399 -1.9719 32 1 3.2588 5.5462 -1.9759 33 1 4.9855 6.9722 -3.4752 34 1 5.2420 9.4433 -2.1316 35 1 6.8282 8.6357 -2.1290 36 1 7.3435 11.5969 -5.7451 37 1 5.1365 2.5788 -0.0058 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259589447.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:57 Heat of formation + Delta-G solvation = -131.538544 kcal Electronic energy + Delta-G solvation = -20600.482166 eV Core-core repulsion = 17063.243529 eV Total energy + Delta-G solvation = -3537.238638 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.83603 -41.10947 -40.50769 -38.78493 -36.17228 -34.49573 -34.33212 -31.72551 -30.89168 -29.59080 -28.15545 -25.60502 -23.78951 -23.74544 -22.12716 -21.27248 -19.29651 -19.12685 -17.98996 -17.93531 -17.46938 -17.14012 -16.95569 -16.54295 -16.05201 -15.96096 -15.79150 -15.24520 -15.10160 -14.82739 -14.70458 -14.21054 -14.04010 -13.66501 -13.43636 -13.14704 -12.99831 -12.82628 -12.68819 -12.39180 -12.11251 -11.92667 -11.86684 -11.85563 -11.64575 -10.91516 -10.78294 -9.93688 -9.89025 -9.11960 -8.39498 -6.46469 0.12453 0.19876 1.33434 1.35661 1.48020 1.78777 2.21053 2.28535 2.42906 2.64225 2.95988 3.21498 3.65756 3.76180 3.95972 4.08368 4.22640 4.30922 4.35281 4.39796 4.40231 4.53407 4.71368 4.73748 4.85012 4.87846 4.93265 5.05016 5.11147 5.18847 5.23595 5.28375 5.56186 5.56901 5.66798 6.09603 6.29810 6.55176 6.88578 7.16656 7.45699 8.75233 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.038189 B = 0.002627 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.015239 B =10656.560873 C =10684.776142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.337 6.337 3 C 0.081 3.919 4 C -0.173 4.173 5 C -0.079 4.079 6 C -0.088 4.088 7 C -0.055 4.055 8 C -0.123 4.123 9 C 0.498 3.502 10 O -0.599 6.599 11 N -0.709 5.709 12 C 0.230 3.770 13 C -0.547 4.547 14 H 0.059 0.941 15 C 0.024 3.976 16 N -0.932 5.932 17 Si 0.939 3.061 18 H -0.266 1.266 19 H -0.274 1.274 20 H -0.259 1.259 21 C -0.114 4.114 22 C 0.040 3.960 23 F -0.149 7.149 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.117 0.883 27 H 0.166 0.834 28 H 0.157 0.843 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.409 0.591 34 H 0.013 0.987 35 H 0.010 0.990 36 H 0.272 0.728 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.962 -20.217 11.760 27.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.251 6.251 3 C 0.035 3.965 4 C -0.192 4.192 5 C -0.097 4.097 6 C -0.088 4.088 7 C -0.092 4.092 8 C -0.162 4.162 9 C 0.286 3.714 10 O -0.481 6.481 11 N -0.358 5.358 12 C 0.106 3.894 13 C -0.585 4.585 14 H 0.077 0.923 15 C -0.176 4.176 16 N -0.571 5.571 17 Si 0.762 3.238 18 H -0.191 1.191 19 H -0.199 1.199 20 H -0.183 1.183 21 C -0.133 4.133 22 C 0.020 3.980 23 F -0.128 7.128 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.135 0.865 27 H 0.184 0.816 28 H 0.174 0.826 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.129 0.871 32 H 0.137 0.863 33 H 0.245 0.755 34 H 0.031 0.969 35 H 0.028 0.972 36 H 0.081 0.919 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -14.592 -19.922 12.356 27.613 hybrid contribution 0.508 0.385 -0.239 0.680 sum -14.084 -19.537 12.118 26.961 Atomic orbital electron populations 1.23430 0.75688 1.05833 1.02809 1.86101 1.24142 1.26088 1.88765 1.19214 0.90674 0.86541 1.00116 1.21425 1.01595 0.90437 1.05721 1.21271 0.93595 0.98408 0.96403 1.19620 0.93901 0.93887 1.01429 1.20189 1.01230 0.92457 0.95372 1.21669 1.03012 0.92006 0.99547 1.21504 0.78581 0.88396 0.82891 1.90634 1.56661 1.67818 1.32958 1.46101 1.59591 1.21138 1.09007 1.19084 0.92137 0.82314 0.95851 1.21320 1.40292 1.05367 0.91473 0.92301 1.25631 0.94987 0.98864 0.98104 1.69987 1.43526 1.23049 1.20533 0.85839 0.79702 0.78397 0.79836 1.19100 1.19876 1.18328 1.21054 1.01682 0.89548 1.00972 1.17280 0.86720 0.82899 1.11116 1.91448 1.76885 1.49825 1.94639 0.91057 0.91080 0.86459 0.81617 0.82556 0.90011 0.91007 0.87093 0.86332 0.75537 0.96917 0.97219 0.91880 0.83411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.34 -6.41 10.36 -92.97 -0.96 -7.38 16 3 C 0.08 1.58 6.69 22.53 0.15 1.73 16 4 C -0.17 -2.45 9.04 22.36 0.20 -2.25 16 5 C -0.08 -1.15 9.69 22.26 0.22 -0.93 16 6 C -0.09 -1.58 5.13 -19.85 -0.10 -1.69 16 7 C -0.05 -1.14 4.63 29.85 0.14 -1.00 16 8 C -0.12 -2.69 5.68 29.85 0.17 -2.52 16 9 C 0.50 17.18 7.83 87.66 0.69 17.87 16 10 O -0.60 -25.52 15.98 -3.04 -0.05 -25.57 16 11 N -0.71 -27.24 5.55 -466.79 -2.59 -29.83 16 12 C 0.23 11.14 4.50 85.63 0.39 11.52 16 13 C -0.55 -29.98 9.83 25.60 0.25 -29.72 16 14 H 0.06 3.39 7.84 -2.91 -0.02 3.36 16 15 C 0.02 1.37 5.47 84.65 0.46 1.83 16 16 N -0.93 -55.56 13.96 21.45 0.30 -55.26 16 17 Si 0.94 43.86 27.47 68.60 1.88 45.75 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 20 H -0.26 -11.95 6.54 99.48 0.65 -11.30 16 21 C -0.11 -2.27 9.67 22.29 0.22 -2.05 16 22 C 0.04 0.89 7.31 22.45 0.16 1.06 16 23 F -0.15 -3.89 17.11 44.97 0.77 -3.12 16 24 H 0.07 0.41 7.67 -2.39 -0.02 0.40 16 25 H 0.07 0.43 7.65 -2.39 -0.02 0.41 16 26 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.17 1.30 6.30 -2.91 -0.02 1.28 16 28 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 29 H 0.08 1.75 8.04 -2.39 -0.02 1.73 16 30 H 0.07 1.66 8.04 -2.39 -0.02 1.64 16 31 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.12 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.41 13.65 8.32 -92.71 -0.77 12.87 16 34 H 0.01 0.66 7.20 -2.39 -0.02 0.64 16 35 H 0.01 0.50 7.57 -2.39 -0.02 0.48 16 36 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 37 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -72.19 323.97 3.67 -68.52 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 0.27 Total: 11.78 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 4.05 Total: -4.89 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -2.29 Total: -85.09 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -1.01 Total: -32.94 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.77 Total: -3.12 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.88 Total: 45.75 kcal Total: -72.19 3.67 -68.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259589447.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.017 kcal (2) G-P(sol) polarization free energy of solvation -72.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds