Wall clock time and date at job start Tue Mar 31 2020 05:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37094 * 120.00136 * 2 1 4 4 H 1.08001 * 120.00334 * 202.40889 * 3 2 1 5 5 C 1.38955 * 119.99753 * 22.41264 * 3 2 1 6 6 N 1.31407 * 120.00091 * 11.59160 * 5 3 2 7 7 Si 1.86801 * 119.99881 * 191.59261 * 5 3 2 8 8 H 1.48492 * 109.47263 * 60.00042 * 7 5 3 9 9 H 1.48504 * 109.47025 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47085 * 299.99503 * 7 5 3 11 11 C 1.34777 * 119.99884 * 180.02562 * 2 1 3 12 12 O 1.21293 * 120.00046 * 179.97438 * 11 2 1 13 13 C 1.50700 * 120.00341 * 359.97438 * 11 2 1 14 14 C 1.52994 * 109.47317 * 179.97438 * 13 11 2 15 15 C 1.53003 * 109.47024 * 179.97438 * 14 13 11 16 16 O 1.42902 * 109.46873 * 180.02562 * 15 14 13 17 17 C 1.35952 * 116.99689 * 180.02562 * 16 15 14 18 18 C 1.38706 * 120.02982 * 0.27510 * 17 16 15 19 19 C 1.38149 * 119.96336 * 180.24915 * 18 17 16 20 20 C 1.38448 * 120.03368 * 359.47630 * 19 18 17 21 21 F 1.35106 * 119.97078 * 180.29630 * 20 19 18 22 22 C 1.38450 * 120.05963 * 0.27516 * 20 19 18 23 23 C 1.38151 * 120.03385 * 359.97438 * 22 20 19 24 24 H 1.09000 * 109.47255 * 272.15079 * 1 2 3 25 25 H 1.09005 * 109.47274 * 32.15452 * 1 2 3 26 26 H 1.08995 * 109.46930 * 152.15496 * 1 2 3 27 27 H 0.97004 * 120.00171 * 180.02562 * 6 5 3 28 28 H 1.09005 * 109.46864 * 59.99888 * 13 11 2 29 29 H 1.08999 * 109.46861 * 300.00350 * 13 11 2 30 30 H 1.09005 * 109.47127 * 60.00194 * 14 13 11 31 31 H 1.08992 * 109.47724 * 300.00377 * 14 13 11 32 32 H 1.09000 * 109.46707 * 60.00616 * 15 14 13 33 33 H 1.08999 * 109.47113 * 300.00470 * 15 14 13 34 34 H 1.08000 * 120.01479 * 0.03033 * 18 17 16 35 35 H 1.08001 * 119.98037 * 179.75327 * 19 18 17 36 36 H 1.08011 * 119.98512 * 179.97438 * 22 20 19 37 37 H 1.07998 * 120.01717 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1693 1.2226 -0.3565 5 6 1.5344 2.3452 0.4588 6 7 0.3896 2.2706 1.0997 7 14 2.3336 4.0078 0.1646 8 1 2.4814 4.2345 -1.2954 9 1 1.4831 5.0760 0.7483 10 1 3.6718 4.0345 0.8078 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1673 -0.0010 13 6 1.3854 -2.4724 -0.0005 14 6 2.3796 -3.6352 -0.0018 15 6 1.6146 -4.9603 -0.0012 16 8 2.5432 -6.0464 -0.0018 17 6 2.0236 -7.3027 -0.0018 18 6 0.6486 -7.4851 -0.0071 19 6 0.1220 -8.7623 -0.0020 20 6 0.9659 -9.8598 -0.0025 21 9 0.4495 -11.1083 -0.0036 22 6 2.3386 -9.6791 -0.0025 23 6 2.8680 -8.4031 -0.0024 24 1 -0.3634 0.0386 1.0269 25 1 -0.3634 0.8701 -0.5469 26 1 -0.3633 -0.9086 -0.4800 27 1 -0.0406 3.0790 1.4197 28 1 0.7584 -2.5299 -0.8903 29 1 0.7591 -2.5302 0.8897 30 1 3.0070 -3.5779 0.8878 31 1 3.0056 -3.5771 -0.8921 32 1 0.9870 -5.0178 -0.8905 33 1 0.9889 -5.0181 0.8895 34 1 -0.0100 -6.6291 -0.0117 35 1 -0.9486 -8.9046 -0.0021 36 1 2.9959 -10.5362 -0.0025 37 1 3.9388 -8.2625 -0.0028 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263852105.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:22 Heat of formation + Delta-G solvation = -93.632204 kcal Electronic energy + Delta-G solvation = -20644.204772 eV Core-core repulsion = 17108.609877 eV Total energy + Delta-G solvation = -3535.594895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.03126 -40.27189 -38.56311 -37.46039 -34.83294 -33.33804 -31.61844 -31.46396 -29.60829 -27.37789 -26.07068 -24.42734 -23.42415 -22.45668 -21.33965 -18.96806 -18.26735 -17.52511 -16.93147 -16.78303 -16.39041 -15.90721 -15.72076 -14.98979 -14.82894 -14.59339 -14.21333 -14.00419 -13.86904 -13.35284 -13.27868 -12.82265 -12.39618 -12.30878 -11.85598 -11.67569 -11.49502 -11.29412 -11.17515 -11.02246 -10.89809 -10.77481 -10.43904 -10.40091 -10.21836 -9.47202 -9.03581 -8.42231 -8.30936 -7.70118 -6.32580 -3.89189 0.87876 0.97524 2.99910 3.17935 3.23466 3.27773 3.31771 3.87884 4.06419 4.13238 4.41019 4.50065 4.78836 4.83242 4.97087 4.99518 5.11722 5.16067 5.26025 5.31762 5.56000 5.66264 5.67527 5.82734 5.85470 5.87783 6.00511 6.03244 6.33067 6.40835 6.44602 6.58085 6.85452 7.19742 7.22775 7.55256 8.11636 8.47223 9.17745 9.41654 9.97046 10.71139 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.056150 B = 0.002478 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.548620 B =11297.351654 C =11720.414476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.448 5.448 3 C -0.306 4.306 4 H 0.098 0.902 5 C 0.029 3.971 6 N -0.885 5.885 7 Si 0.928 3.072 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.273 1.273 11 C 0.445 3.555 12 O -0.590 6.590 13 C -0.126 4.126 14 C -0.098 4.098 15 C 0.058 3.942 16 O -0.308 6.308 17 C 0.130 3.870 18 C -0.184 4.184 19 C -0.111 4.111 20 C 0.050 3.950 21 F -0.144 7.144 22 C -0.113 4.113 23 C -0.127 4.127 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.026 0.974 27 H 0.268 0.732 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.544 -19.101 -2.083 19.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.167 5.167 3 C -0.434 4.434 4 H 0.116 0.884 5 C -0.174 4.174 6 N -0.525 5.525 7 Si 0.754 3.246 8 H -0.199 1.199 9 H -0.210 1.210 10 H -0.198 1.198 11 C 0.233 3.767 12 O -0.476 6.476 13 C -0.166 4.166 14 C -0.136 4.136 15 C -0.017 4.017 16 O -0.221 6.221 17 C 0.083 3.917 18 C -0.202 4.202 19 C -0.130 4.130 20 C 0.031 3.969 21 F -0.123 7.123 22 C -0.132 4.132 23 C -0.146 4.146 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.045 0.955 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.158 0.842 35 H 0.155 0.845 36 H 0.158 0.842 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.928 -18.893 -1.994 19.222 hybrid contribution -0.343 0.741 -0.009 0.817 sum -3.271 -18.152 -2.004 18.553 Atomic orbital electron populations 1.21509 0.81161 0.98778 1.01703 1.43601 1.05534 1.04837 1.62713 1.19620 0.99476 0.83889 1.40455 0.88431 1.25344 0.96527 1.00098 0.95384 1.69984 1.17392 1.29378 1.35702 0.85977 0.79030 0.80824 0.78742 1.19928 1.20959 1.19781 1.19938 0.88042 0.84773 0.83921 1.90523 1.13999 1.87164 1.55867 1.21405 0.98545 0.93782 1.02902 1.21203 0.98191 0.89096 1.05115 1.23043 0.91984 0.85338 1.01326 1.86141 1.36462 1.11750 1.87750 1.19116 0.91740 0.85443 0.95383 1.21206 0.94259 0.97972 1.06796 1.20941 1.00332 0.91156 1.00586 1.17567 0.92025 0.79517 1.07810 1.91482 1.87432 1.38942 1.94452 1.20947 0.93352 0.97858 1.01023 1.20332 1.00479 0.89315 1.04487 0.92397 0.91316 0.95525 0.92223 0.90345 0.90126 0.90188 0.90259 0.91861 0.91799 0.84226 0.84539 0.84182 0.84044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.43 8.52 59.85 0.51 2.94 16 2 N -0.45 -11.35 3.02 -122.19 -0.37 -11.72 16 3 C -0.31 -8.53 9.29 -14.93 -0.14 -8.67 16 4 H 0.10 2.84 7.41 -52.49 -0.39 2.45 16 5 C 0.03 0.77 5.11 -17.47 -0.09 0.68 16 6 N -0.88 -23.41 10.62 55.50 0.59 -22.82 16 7 Si 0.93 20.71 29.57 -169.99 -5.03 15.68 16 8 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 11 C 0.45 10.57 7.63 -10.98 -0.08 10.49 16 12 O -0.59 -16.16 15.67 5.55 0.09 -16.07 16 13 C -0.13 -2.12 4.22 -27.89 -0.12 -2.23 16 14 C -0.10 -1.51 4.87 -26.73 -0.13 -1.64 16 15 C 0.06 0.69 4.74 37.16 0.18 0.86 16 16 O -0.31 -4.00 10.14 -19.59 -0.20 -4.20 16 17 C 0.13 1.47 6.69 -39.23 -0.26 1.21 16 18 C -0.18 -1.81 9.04 -39.44 -0.36 -2.17 16 19 C -0.11 -1.04 10.02 -39.54 -0.40 -1.44 16 20 C 0.05 0.50 7.30 -39.43 -0.29 0.21 16 21 F -0.14 -1.53 17.27 2.25 0.04 -1.49 16 22 C -0.11 -1.03 10.02 -39.54 -0.40 -1.43 16 23 C -0.13 -1.27 9.99 -39.44 -0.39 -1.67 16 24 H 0.06 1.30 7.54 -51.93 -0.39 0.91 16 25 H 0.07 1.58 7.06 -51.93 -0.37 1.21 16 26 H 0.03 0.46 6.36 -51.93 -0.33 0.13 16 27 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 28 H 0.08 1.14 7.41 -51.93 -0.38 0.76 16 29 H 0.08 1.23 8.11 -51.93 -0.42 0.81 16 30 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 31 H 0.08 1.32 8.10 -51.93 -0.42 0.90 16 32 H 0.06 0.64 7.65 -51.93 -0.40 0.25 16 33 H 0.06 0.66 7.68 -51.93 -0.40 0.27 16 34 H 0.14 1.15 6.30 -52.49 -0.33 0.82 16 35 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.14 0.96 8.06 -52.48 -0.42 0.53 16 37 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 319.21 15.07 4.81 4.81 Total: -1.00 -31.38 319.21 -6.69 -38.07 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -4.65 Total: 0.59 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -1.97 Total: -2.84 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.22 Total: -34.54 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.11 Total: -20.27 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.38 -6.69 -38.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263852105.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.566 kcal (2) G-P(sol) polarization free energy of solvation -31.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds