Wall clock time and date at job start Tue Mar 31 2020 05:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.40419 * 120.35122 * 59.51303 * 3 2 1 5 5 N 1.30858 * 121.63215 * 180.25688 * 4 3 2 6 6 C 1.34030 * 122.00141 * 359.42946 * 5 4 3 7 7 C 1.40445 * 120.74950 * 180.28396 * 6 5 4 8 8 C 1.36220 * 119.82193 * 180.27000 * 7 6 5 9 9 C 1.39209 * 121.02516 * 0.02562 * 8 7 6 10 10 C 1.36305 * 120.76684 * 0.02562 * 9 8 7 11 11 C 1.40192 * 119.64704 * 359.95778 * 10 9 8 12 12 C 1.40232 * 120.35479 * 239.48716 * 3 2 1 13 13 N 1.37910 * 121.12047 * 0.04310 * 12 3 2 14 14 C 1.46905 * 110.99810 * 59.99836 * 13 12 3 15 15 C 1.53002 * 109.47232 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.47070 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.47016 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00169 * 359.97438 * 17 16 15 19 19 C 1.37873 * 119.99990 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00034 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00011 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47363 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47164 * 120.00051 * 21 19 17 24 24 H 1.48499 * 109.47276 * 240.00061 * 21 19 17 25 25 H 1.08002 * 119.18008 * 359.97141 * 4 3 2 26 26 H 1.07999 * 120.08882 * 0.29531 * 7 6 5 27 27 H 1.08000 * 119.48593 * 179.97438 * 8 7 6 28 28 H 1.07995 * 119.61491 * 179.97438 * 9 8 7 29 29 H 1.07999 * 120.17493 * 180.02562 * 10 9 8 30 30 H 1.00899 * 111.00575 * 183.95261 * 13 12 3 31 31 H 1.08999 * 109.47251 * 300.00353 * 14 13 12 32 32 H 1.09000 * 109.46875 * 60.00565 * 14 13 12 33 33 H 1.08999 * 109.47543 * 300.00483 * 15 14 13 34 34 H 1.09008 * 109.46335 * 60.00347 * 15 14 13 35 35 H 1.09001 * 109.46974 * 299.99758 * 16 15 14 36 36 H 1.08997 * 109.47278 * 60.00305 * 16 15 14 37 37 H 0.97003 * 120.00180 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2778 -0.6138 -1.0442 5 7 4.5861 -0.6324 -1.0669 6 6 5.3214 -0.0585 -0.1044 7 6 6.7245 -0.0890 -0.1581 8 6 7.4532 0.4955 0.8332 9 6 6.8292 1.1263 1.9059 10 6 5.4697 1.1745 1.9916 11 6 4.6902 0.5829 0.9878 12 6 3.2764 0.6154 1.0425 13 7 2.6176 1.2295 2.0868 14 6 1.7648 0.2737 2.8061 15 6 1.0525 0.9900 3.9552 16 6 0.1649 -0.0056 4.7047 17 6 -0.5372 0.7001 5.8361 18 1 -0.3670 1.7533 6.0041 19 6 -1.3960 0.0010 6.6575 20 7 -1.6028 -1.2816 6.4533 21 14 -2.2657 0.8756 8.0604 22 1 -1.8651 2.3055 8.0765 23 1 -3.7352 0.7748 7.8713 24 1 -1.8878 0.2417 9.3490 25 1 2.7304 -1.0867 -1.8461 26 1 7.2243 -0.5743 -0.9834 27 1 8.5319 0.4685 0.7867 28 1 7.4293 1.5821 2.6796 29 1 4.9956 1.6668 2.8279 30 1 3.2702 1.6750 2.7142 31 1 1.0249 -0.1402 2.1211 32 1 2.3800 -0.5321 3.2066 33 1 1.7927 1.4036 4.6402 34 1 0.4374 1.7961 3.5550 35 1 -0.5754 -0.4194 4.0200 36 1 0.7803 -0.8114 5.1048 37 1 -2.2073 -1.7734 7.0309 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266429949.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:48 Heat of formation + Delta-G solvation = 76.715267 kcal Electronic energy + Delta-G solvation = -20288.941526 eV Core-core repulsion = 17223.795427 eV Total energy + Delta-G solvation = -3065.146099 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.34923 -38.18117 -37.10592 -36.06561 -34.14891 -32.42079 -31.14752 -30.89613 -29.71302 -26.61894 -24.59632 -24.35383 -22.95231 -21.44914 -20.47919 -19.86920 -18.47083 -17.52211 -16.37688 -16.23357 -15.56603 -15.03296 -14.98204 -14.72810 -14.49632 -14.40713 -14.01472 -13.62374 -13.40677 -13.05523 -12.75343 -12.51359 -12.23453 -11.95284 -11.93149 -11.75569 -11.66240 -11.04151 -10.78324 -10.75913 -10.55304 -9.90095 -9.83833 -9.51434 -9.34303 -9.15518 -9.07415 -8.40953 -8.05314 -6.05204 -4.08324 0.01619 0.39866 1.56164 2.40921 2.78402 3.28167 3.33890 3.35719 3.39381 3.55477 3.76119 3.92518 4.09378 4.22842 4.41937 4.50882 4.58481 4.74640 4.96004 5.04828 5.20716 5.26531 5.30909 5.38029 5.48805 5.57808 5.70312 5.91782 5.96335 6.03235 6.11632 6.37107 6.42661 6.50316 6.79066 6.84067 6.98650 7.56296 7.57739 7.69175 7.73104 7.92695 8.33862 8.98133 9.56252 11.06213 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022154 B = 0.003636 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.569054 B = 7699.568655 C = 8616.405289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C 0.261 3.739 3 C -0.135 4.135 4 C 0.206 3.794 5 N -0.501 5.501 6 C 0.166 3.834 7 C -0.103 4.103 8 C -0.086 4.086 9 C -0.124 4.124 10 C -0.084 4.084 11 C -0.147 4.147 12 C 0.246 3.754 13 N -0.623 5.623 14 C 0.052 3.948 15 C -0.109 4.109 16 C 0.023 3.977 17 C -0.521 4.521 18 H 0.057 0.943 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.893 3.107 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.284 1.284 25 H 0.168 0.832 26 H 0.138 0.862 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.366 0.634 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.018 0.982 36 H 0.016 0.984 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.638 3.178 -12.779 23.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.080 5.080 2 C -0.055 4.055 3 C -0.146 4.146 4 C 0.031 3.969 5 N -0.211 5.211 6 C 0.046 3.954 7 C -0.122 4.122 8 C -0.106 4.106 9 C -0.142 4.142 10 C -0.103 4.103 11 C -0.151 4.151 12 C 0.130 3.870 13 N -0.244 5.244 14 C -0.073 4.073 15 C -0.147 4.147 16 C -0.014 4.014 17 C -0.560 4.560 18 H 0.075 0.925 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.721 3.279 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.210 1.210 25 H 0.185 0.815 26 H 0.156 0.844 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.148 0.852 30 H 0.191 0.809 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.037 0.963 36 H 0.035 0.965 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 17.756 2.927 -13.618 22.568 hybrid contribution -0.007 0.525 1.959 2.028 sum 17.749 3.452 -11.659 21.515 Atomic orbital electron populations 1.81333 1.11535 1.08160 1.06971 1.24987 0.91985 0.94280 0.94200 1.16580 0.85970 1.12352 0.99653 1.22778 0.89472 0.90614 0.94081 1.68061 1.06583 1.20262 1.26150 1.18823 0.94286 0.93084 0.89229 1.20813 0.91058 1.00439 0.99901 1.20994 1.00513 0.95738 0.93311 1.20872 0.94344 1.00157 0.98823 1.20864 0.94398 0.97753 0.97326 1.18887 0.92181 1.05046 0.99031 1.19205 0.90128 0.86009 0.91642 1.56843 1.24840 1.29626 1.13081 1.22693 0.95452 0.92499 0.96612 1.21728 0.98879 1.00085 0.94042 1.19055 0.93957 0.93726 0.94704 1.21210 1.25792 0.95835 1.13124 0.92524 1.25029 0.96715 0.94866 0.97835 1.69973 1.36838 1.07559 1.38917 0.86517 0.79504 0.79814 0.82064 1.19700 1.20936 1.20969 0.81460 0.84380 0.85070 0.85141 0.85203 0.80868 0.89800 0.92922 0.92866 0.92054 0.96350 0.96522 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -7.22 18.17 41.84 0.76 -6.46 16 2 C 0.26 3.97 12.40 -22.47 -0.28 3.70 16 3 C -0.13 -1.73 5.65 -106.40 -0.60 -2.33 16 4 C 0.21 2.24 10.87 -17.15 -0.19 2.05 16 5 N -0.50 -5.82 10.30 -10.75 -0.11 -5.93 16 6 C 0.17 1.86 6.60 -84.83 -0.56 1.30 16 7 C -0.10 -0.91 9.97 -39.48 -0.39 -1.30 16 8 C -0.09 -0.60 9.94 -39.95 -0.40 -1.00 16 9 C -0.12 -0.91 9.96 -39.92 -0.40 -1.31 16 10 C -0.08 -0.76 9.41 -39.54 -0.37 -1.13 16 11 C -0.15 -1.64 5.75 -106.67 -0.61 -2.25 16 12 C 0.25 3.11 5.81 -83.13 -0.48 2.63 16 13 N -0.62 -8.36 6.28 -57.74 -0.36 -8.72 16 14 C 0.05 0.85 5.27 -3.82 -0.02 0.83 16 15 C -0.11 -2.16 5.41 -26.73 -0.14 -2.31 16 16 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 17 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 18 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 21 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 26 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 27 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 28 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 29 H 0.13 0.97 6.24 -52.49 -0.33 0.65 16 30 H 0.37 4.04 6.21 -39.29 -0.24 3.80 16 31 H 0.08 1.53 5.02 -51.93 -0.26 1.27 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 321.96 15.07 4.85 4.85 Total: -1.00 -32.83 321.96 -8.32 -41.15 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -4.18 Total: -1.17 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -5.00 Total: -14.14 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: 1.02 Total: -47.33 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.83 -8.32 -41.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266429949.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.865 kcal (2) G-P(sol) polarization free energy of solvation -32.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds