Wall clock time and date at job start Tue Mar 31 2020 05:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.46902 * 2 1 4 4 C 1.37096 * 120.00375 * 264.77000 * 3 2 1 5 5 H 1.07997 * 120.00150 * 138.85011 * 4 3 2 6 6 C 1.38950 * 119.99755 * 318.85335 * 4 3 2 7 7 N 1.31414 * 119.99784 * 341.82284 * 6 4 3 8 8 Si 1.86800 * 120.00206 * 161.82546 * 6 4 3 9 9 H 1.48503 * 109.47123 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46978 * 119.99852 * 8 6 4 11 11 H 1.48501 * 109.47017 * 239.99801 * 8 6 4 12 12 C 1.34777 * 119.99932 * 84.76661 * 3 2 1 13 13 O 1.21291 * 120.00124 * 179.97438 * 12 3 2 14 14 C 1.50706 * 120.00093 * 0.02562 * 12 3 2 15 15 C 1.52999 * 109.47284 * 179.97438 * 14 12 3 16 16 H 1.09003 * 109.46909 * 54.99946 * 15 14 12 17 17 O 1.42898 * 109.47070 * 295.00152 * 15 14 12 18 18 C 1.50702 * 109.47358 * 174.99837 * 15 14 12 19 19 C 1.38260 * 119.98490 * 265.00446 * 18 15 14 20 20 C 1.38227 * 120.04854 * 179.97438 * 19 18 15 21 21 C 1.38219 * 120.02698 * 0.02562 * 20 19 18 22 22 C 1.38443 * 119.97208 * 359.97438 * 21 20 19 23 23 F 1.35097 * 120.02384 * 180.02562 * 22 21 20 24 24 C 1.38170 * 119.98399 * 84.97745 * 18 15 14 25 25 H 1.09001 * 109.46583 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47287 * 299.99852 * 1 2 3 27 27 H 1.09004 * 109.46798 * 60.00179 * 1 2 3 28 28 H 1.08995 * 109.47287 * 240.00148 * 2 1 3 29 29 H 1.09001 * 109.47526 * 119.99779 * 2 1 3 30 30 H 0.97003 * 119.99528 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.47179 * 59.99696 * 14 12 3 32 32 H 1.08998 * 109.47158 * 299.99765 * 14 12 3 33 33 H 0.96701 * 113.99895 * 299.99652 * 17 15 14 34 34 H 1.07998 * 119.98153 * 359.69597 * 19 18 15 35 35 H 1.08005 * 119.98618 * 179.97438 * 20 19 18 36 36 H 1.08003 * 120.01626 * 179.97438 * 21 20 19 37 37 H 1.07997 * 120.01648 * 0.04618 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3488 1.9915 -1.1823 5 1 2.0742 3.0219 -1.3534 6 6 3.0371 1.2843 -2.1605 7 7 3.6792 0.1820 -1.8450 8 14 3.0498 1.9005 -3.9239 9 1 2.2584 3.1537 -4.0160 10 1 4.4487 2.1671 -4.3450 11 1 2.4531 0.8710 -4.8123 12 6 2.1425 2.0521 1.1623 13 8 2.5472 3.1955 1.1624 14 6 1.7797 1.3811 2.4621 15 6 2.0115 2.3536 3.6202 16 1 1.4582 3.2748 3.4374 17 8 3.4060 2.6480 3.7231 18 6 1.5340 1.7276 4.9052 19 6 0.2598 1.9932 5.3715 20 6 -0.1797 1.4192 6.5497 21 6 0.6546 0.5795 7.2633 22 6 1.9307 0.3129 6.7973 23 9 2.7469 -0.5081 7.4937 24 6 2.3697 0.8881 5.6166 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 4.1600 -0.3115 -2.5278 31 1 2.4018 0.4968 2.6006 32 1 0.7304 1.0871 2.4387 33 1 3.9606 1.8728 3.8862 34 1 -0.3911 2.6530 4.8172 35 1 -1.1751 1.6277 6.9133 36 1 0.3112 0.1315 8.1841 37 1 3.3651 0.6811 5.2523 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271827063.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:49 Heat of formation + Delta-G solvation = -104.619735 kcal Electronic energy + Delta-G solvation = -21951.889106 eV Core-core repulsion = 18415.817755 eV Total energy + Delta-G solvation = -3536.071350 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.99555 -39.75803 -38.43955 -36.48092 -34.80668 -32.23069 -31.74393 -30.73899 -29.48773 -29.32064 -25.45193 -23.91393 -22.77488 -22.23699 -21.24247 -18.97192 -17.94450 -16.72353 -16.61745 -16.29591 -15.84427 -15.73473 -15.67474 -15.20719 -14.64368 -14.06837 -14.02979 -13.67436 -13.52059 -13.09337 -12.89142 -12.71701 -12.35006 -11.98818 -11.89490 -11.76675 -11.47241 -11.14488 -11.11122 -11.01880 -10.75505 -10.35178 -10.28913 -10.08342 -9.88972 -9.11308 -8.90388 -8.80105 -8.29910 -7.38365 -6.29448 -3.97531 1.01381 1.06039 3.17619 3.27834 3.33816 3.42631 3.95944 4.06626 4.18172 4.47319 4.61049 4.72955 4.82548 4.97918 5.03871 5.15188 5.22528 5.35123 5.47868 5.67087 5.79412 5.84479 5.91059 5.96195 6.01752 6.10906 6.18744 6.21445 6.35269 6.48311 6.53292 6.74599 6.86002 7.21413 7.61184 7.93090 8.33184 8.55684 9.24412 9.43632 10.07113 10.75912 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029197 B = 0.004002 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.784250 B = 6994.915696 C = 7056.987201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.104 3.896 3 N -0.445 5.445 4 C -0.306 4.306 5 H 0.087 0.913 6 C 0.038 3.962 7 N -0.874 5.874 8 Si 0.916 3.084 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.281 1.281 12 C 0.465 3.535 13 O -0.564 6.564 14 C -0.165 4.165 15 C 0.166 3.834 16 H 0.116 0.884 17 O -0.534 6.534 18 C -0.078 4.078 19 C -0.121 4.121 20 C -0.089 4.089 21 C -0.161 4.161 22 C 0.100 3.900 23 F -0.141 7.141 24 C -0.147 4.147 25 H 0.049 0.951 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.103 0.897 29 H 0.046 0.954 30 H 0.266 0.734 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.365 0.635 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.653 -3.460 13.860 16.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.021 4.021 3 N -0.166 5.166 4 C -0.434 4.434 5 H 0.105 0.895 6 C -0.166 4.166 7 N -0.512 5.512 8 Si 0.743 3.257 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.207 1.207 12 C 0.252 3.748 13 O -0.446 6.446 14 C -0.205 4.205 15 C 0.106 3.894 16 H 0.133 0.867 17 O -0.338 6.338 18 C -0.078 4.078 19 C -0.140 4.140 20 C -0.107 4.107 21 C -0.180 4.180 22 C 0.081 3.919 23 F -0.120 7.120 24 C -0.166 4.166 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.121 0.879 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.211 0.789 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.508 -2.450 13.658 15.777 hybrid contribution 0.330 -0.884 -0.598 1.117 sum -7.178 -3.334 13.060 15.271 Atomic orbital electron populations 1.22229 0.98339 1.00297 1.01473 1.21428 0.91513 0.85824 1.03316 1.43449 1.56593 1.11678 1.04841 1.19404 1.34621 0.98484 0.90909 0.89492 1.25414 0.94101 0.96587 1.00535 1.69935 1.29726 1.17683 1.33815 0.86031 0.78136 0.78980 0.82532 1.19206 1.20776 1.20699 1.20128 0.82118 0.88027 0.84511 1.90566 1.49048 1.18486 1.86531 1.22423 1.03309 0.99560 0.95228 1.20588 0.83347 0.98015 0.87471 0.86675 1.86770 1.16066 1.36354 1.94600 1.20725 0.94165 0.95613 0.97317 1.21117 0.95623 1.00653 0.96571 1.20997 0.99498 0.95742 0.94467 1.21122 0.93040 1.01837 1.01992 1.17651 0.89202 0.93100 0.91973 1.91497 1.72161 1.70046 1.78297 1.20907 1.01514 0.99268 0.94899 0.93172 0.93945 0.92388 0.87938 0.93584 0.92417 0.89804 0.89420 0.78862 0.84977 0.84948 0.84938 0.84748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 10.15 37.16 0.38 -2.49 16 2 C 0.10 2.19 5.41 -4.04 -0.02 2.17 16 3 N -0.45 -11.10 2.50 -114.81 -0.29 -11.39 16 4 C -0.31 -8.47 8.84 -14.93 -0.13 -8.61 16 5 H 0.09 2.53 7.82 -52.49 -0.41 2.12 16 6 C 0.04 1.00 4.95 -17.47 -0.09 0.91 16 7 N -0.87 -23.66 11.61 55.50 0.64 -23.01 16 8 Si 0.92 20.69 29.59 -169.99 -5.03 15.66 16 9 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 C 0.46 11.09 7.47 -10.98 -0.08 11.01 16 13 O -0.56 -15.68 15.33 -8.88 -0.14 -15.81 16 14 C -0.16 -2.86 3.97 -27.88 -0.11 -2.97 16 15 C 0.17 2.65 2.76 -27.88 -0.08 2.57 16 16 H 0.12 1.96 7.86 -51.93 -0.41 1.55 16 17 O -0.53 -9.49 12.37 -49.66 -0.61 -10.10 16 18 C -0.08 -1.00 5.00 -104.64 -0.52 -1.53 16 19 C -0.12 -1.34 9.68 -39.58 -0.38 -1.72 16 20 C -0.09 -0.84 10.04 -39.59 -0.40 -1.24 16 21 C -0.16 -1.63 10.03 -39.51 -0.40 -2.03 16 22 C 0.10 1.19 7.30 -39.42 -0.29 0.91 16 23 F -0.14 -1.77 17.27 2.25 0.04 -1.73 16 24 C -0.15 -1.83 9.31 -39.52 -0.37 -2.19 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.04 0.67 6.60 -51.93 -0.34 0.33 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.10 2.43 5.76 -51.93 -0.30 2.13 16 29 H 0.05 0.89 6.66 -51.93 -0.35 0.54 16 30 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 31 H 0.08 1.38 7.41 -51.93 -0.38 0.99 16 32 H 0.09 1.35 6.54 -51.93 -0.34 1.01 16 33 H 0.36 5.16 7.39 45.56 0.34 5.50 16 34 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 36 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 37 H 0.13 1.52 6.61 -52.49 -0.35 1.17 16 LS Contribution 316.32 15.07 4.77 4.77 Total: -1.00 -32.64 316.32 -6.90 -39.53 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -3.79 Total: 7.29 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -2.49 Total: -5.20 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.36 Total: -34.40 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.75 Total: -25.91 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.64 -6.90 -39.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271827063.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.086 kcal (2) G-P(sol) polarization free energy of solvation -32.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds