Wall clock time and date at job start Tue Mar 31 2020 05:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.46902 * 2 1 4 4 C 1.37096 * 120.00375 * 264.77000 * 3 2 1 5 5 H 1.07997 * 120.00150 * 138.85011 * 4 3 2 6 6 C 1.38950 * 119.99755 * 318.85335 * 4 3 2 7 7 N 1.31414 * 119.99784 * 341.82284 * 6 4 3 8 8 Si 1.86800 * 120.00206 * 161.82546 * 6 4 3 9 9 H 1.48503 * 109.47123 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46978 * 119.99852 * 8 6 4 11 11 H 1.48501 * 109.47017 * 239.99801 * 8 6 4 12 12 C 1.34777 * 119.99932 * 84.76661 * 3 2 1 13 13 O 1.21291 * 120.00124 * 179.97438 * 12 3 2 14 14 C 1.50706 * 120.00093 * 0.02562 * 12 3 2 15 15 C 1.52999 * 109.47284 * 179.97438 * 14 12 3 16 16 H 1.09003 * 109.46909 * 54.99946 * 15 14 12 17 17 O 1.42898 * 109.47070 * 295.00152 * 15 14 12 18 18 C 1.50702 * 109.47358 * 174.99837 * 15 14 12 19 19 C 1.38260 * 119.98490 * 265.00446 * 18 15 14 20 20 C 1.38227 * 120.04854 * 179.97438 * 19 18 15 21 21 C 1.38219 * 120.02698 * 0.02562 * 20 19 18 22 22 C 1.38443 * 119.97208 * 359.97438 * 21 20 19 23 23 F 1.35097 * 120.02384 * 180.02562 * 22 21 20 24 24 C 1.38170 * 119.98399 * 84.97745 * 18 15 14 25 25 H 1.09001 * 109.46583 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47287 * 299.99852 * 1 2 3 27 27 H 1.09004 * 109.46798 * 60.00179 * 1 2 3 28 28 H 1.08995 * 109.47287 * 240.00148 * 2 1 3 29 29 H 1.09001 * 109.47526 * 119.99779 * 2 1 3 30 30 H 0.97003 * 119.99528 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.47179 * 59.99696 * 14 12 3 32 32 H 1.08998 * 109.47158 * 299.99765 * 14 12 3 33 33 H 0.96701 * 113.99895 * 299.99652 * 17 15 14 34 34 H 1.07998 * 119.98153 * 359.69597 * 19 18 15 35 35 H 1.08005 * 119.98618 * 179.97438 * 20 19 18 36 36 H 1.08003 * 120.01626 * 179.97438 * 21 20 19 37 37 H 1.07997 * 120.01648 * 0.04618 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3488 1.9915 -1.1823 5 1 2.0742 3.0219 -1.3534 6 6 3.0371 1.2843 -2.1605 7 7 3.6792 0.1820 -1.8450 8 14 3.0498 1.9005 -3.9239 9 1 2.2584 3.1537 -4.0160 10 1 4.4487 2.1671 -4.3450 11 1 2.4531 0.8710 -4.8123 12 6 2.1425 2.0521 1.1623 13 8 2.5472 3.1955 1.1624 14 6 1.7797 1.3811 2.4621 15 6 2.0115 2.3536 3.6202 16 1 1.4582 3.2748 3.4374 17 8 3.4060 2.6480 3.7231 18 6 1.5340 1.7276 4.9052 19 6 0.2598 1.9932 5.3715 20 6 -0.1797 1.4192 6.5497 21 6 0.6546 0.5795 7.2633 22 6 1.9307 0.3129 6.7973 23 9 2.7469 -0.5081 7.4937 24 6 2.3697 0.8881 5.6166 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 4.1600 -0.3115 -2.5278 31 1 2.4018 0.4968 2.6006 32 1 0.7304 1.0871 2.4387 33 1 3.9606 1.8728 3.8862 34 1 -0.3911 2.6530 4.8172 35 1 -1.1751 1.6277 6.9133 36 1 0.3112 0.1315 8.1841 37 1 3.3651 0.6811 5.2523 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271827063.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:49 Heat of formation + Delta-G solvation = -125.307961 kcal Electronic energy + Delta-G solvation = -21952.786214 eV Core-core repulsion = 18415.817755 eV Total energy + Delta-G solvation = -3536.968459 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.90026 -40.98556 -39.95780 -37.78403 -36.68891 -34.09217 -32.98598 -31.60624 -31.13529 -30.63108 -27.16933 -25.33100 -23.87310 -23.59772 -22.34260 -20.72154 -19.08074 -18.58850 -17.66382 -17.57236 -17.10508 -17.07402 -16.78914 -16.59141 -16.18504 -15.76369 -15.22266 -14.98390 -14.71484 -14.49915 -14.32882 -14.05377 -13.59197 -13.53284 -13.34718 -12.87967 -12.82803 -12.77825 -12.65375 -12.35847 -12.29817 -12.09675 -11.93990 -11.75996 -11.15583 -10.86050 -10.30717 -9.93274 -9.65222 -9.35322 -8.31802 -6.07782 0.14493 0.22541 1.36812 1.41169 1.54595 2.12516 2.30899 2.56650 3.01462 3.04006 3.25350 3.52718 3.63508 3.79260 3.92672 4.06886 4.19636 4.20987 4.29675 4.40630 4.50744 4.59744 4.67563 4.82752 4.84335 4.91933 5.07238 5.09902 5.15626 5.32569 5.35237 5.47841 5.52220 5.56853 5.91864 6.26696 6.59997 6.75946 7.23909 7.52258 8.14717 8.71953 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029197 B = 0.004002 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.784250 B = 6994.915696 C = 7056.987201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.102 3.898 3 N -0.459 5.459 4 C -0.339 4.339 5 H 0.059 0.941 6 C 0.003 3.997 7 N -0.894 5.894 8 Si 0.979 3.021 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.263 1.263 12 C 0.451 3.549 13 O -0.616 6.616 14 C -0.147 4.147 15 C 0.172 3.828 16 H 0.099 0.901 17 O -0.561 6.561 18 C -0.089 4.089 19 C -0.123 4.123 20 C -0.080 4.080 21 C -0.153 4.153 22 C 0.082 3.918 23 F -0.149 7.149 24 C -0.156 4.156 25 H 0.083 0.917 26 H 0.058 0.942 27 H 0.040 0.960 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.271 0.729 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.377 0.623 34 H 0.146 0.854 35 H 0.169 0.831 36 H 0.158 0.842 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.487 -4.729 15.043 18.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.021 4.021 3 N -0.179 5.179 4 C -0.467 4.467 5 H 0.077 0.923 6 C -0.199 4.199 7 N -0.532 5.532 8 Si 0.803 3.197 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.188 1.188 12 C 0.241 3.759 13 O -0.501 6.501 14 C -0.187 4.187 15 C 0.112 3.888 16 H 0.116 0.884 17 O -0.368 6.368 18 C -0.090 4.090 19 C -0.141 4.141 20 C -0.098 4.098 21 C -0.172 4.172 22 C 0.063 3.937 23 F -0.127 7.127 24 C -0.175 4.175 25 H 0.102 0.898 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.132 0.868 33 H 0.225 0.775 34 H 0.164 0.836 35 H 0.186 0.814 36 H 0.175 0.825 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.356 -3.767 14.849 17.950 hybrid contribution 0.913 -0.493 -0.907 1.378 sum -8.444 -4.260 13.942 16.847 Atomic orbital electron populations 1.22117 0.95163 1.02482 1.01469 1.21534 0.94089 0.83636 1.02873 1.43752 1.56663 1.12947 1.04549 1.19350 1.36275 0.98006 0.93070 0.92323 1.26123 0.93240 0.96662 1.03864 1.70000 1.29752 1.18322 1.35083 0.85109 0.77969 0.78684 0.77975 1.19531 1.20683 1.18808 1.21151 0.80958 0.87571 0.86244 1.90523 1.51177 1.20831 1.87578 1.22319 1.04921 0.99539 0.91965 1.20432 0.82466 0.97182 0.88681 0.88367 1.86716 1.17421 1.37818 1.94796 1.20348 0.95362 0.96860 0.96388 1.21379 0.94888 1.00581 0.97273 1.21368 1.00774 0.94349 0.93279 1.21492 0.92036 1.01027 1.02598 1.17846 0.90090 0.93662 0.92107 1.91478 1.72558 1.70317 1.78375 1.20957 1.01682 0.99497 0.95377 0.89803 0.92310 0.94038 0.90576 0.91731 0.91908 0.88548 0.86776 0.77467 0.83612 0.81398 0.82451 0.84677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.05 10.15 71.98 0.73 -4.32 16 2 C 0.10 4.26 5.41 86.38 0.47 4.73 16 3 N -0.46 -23.32 2.50 -635.54 -1.59 -24.91 16 4 C -0.34 -19.38 8.84 84.04 0.74 -18.64 16 5 H 0.06 3.60 7.82 -2.91 -0.02 3.58 16 6 C 0.00 0.18 4.95 84.93 0.42 0.60 16 7 N -0.89 -48.81 11.61 21.66 0.25 -48.56 16 8 Si 0.98 42.92 29.59 68.60 2.03 44.95 16 9 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 12 C 0.45 21.99 7.47 87.66 0.65 22.65 16 13 O -0.62 -35.67 15.33 10.73 0.16 -35.50 16 14 C -0.15 -5.02 3.97 29.85 0.12 -4.90 16 15 C 0.17 5.48 2.76 29.85 0.08 5.56 16 16 H 0.10 3.41 7.86 -2.39 -0.02 3.40 16 17 O -0.56 -20.42 12.37 -135.19 -1.67 -22.09 16 18 C -0.09 -2.17 5.00 -19.87 -0.10 -2.27 16 19 C -0.12 -2.37 9.68 22.27 0.22 -2.16 16 20 C -0.08 -1.19 10.04 22.26 0.22 -0.97 16 21 C -0.15 -2.56 10.03 22.31 0.22 -2.34 16 22 C 0.08 1.80 7.30 22.38 0.16 1.96 16 23 F -0.15 -3.51 17.27 44.97 0.78 -2.73 16 24 C -0.16 -3.69 9.31 22.31 0.21 -3.49 16 25 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.06 1.72 6.60 -2.39 -0.02 1.70 16 27 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.08 3.61 5.76 -2.39 -0.01 3.59 16 29 H 0.06 2.40 6.66 -2.39 -0.02 2.39 16 30 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 31 H 0.10 3.05 7.41 -2.39 -0.02 3.03 16 32 H 0.11 3.26 6.54 -2.39 -0.02 3.24 16 33 H 0.38 10.95 7.39 -74.06 -0.55 10.40 16 34 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16 35 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 36 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 37 H 0.14 3.01 6.61 -2.91 -0.02 2.99 16 Total: -1.00 -73.39 316.32 4.67 -68.73 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.55 Total: 23.71 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: 4.15 Total: -3.58 kcal Atomic # 7 Polarization: -72.13 SS G_CDS: -1.34 Total: -73.47 kcal Atomic # 8 Polarization: -56.09 SS G_CDS: -1.51 Total: -57.59 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.78 Total: -2.73 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -73.39 4.67 -68.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271827063.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.580 kcal (2) G-P(sol) polarization free energy of solvation -73.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds