Wall clock time and date at job start Tue Mar 31 2020 05:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.46977 * 2 1 4 4 O 1.42903 * 109.46649 * 240.00258 * 2 1 3 5 5 C 1.35956 * 116.99860 * 84.66699 * 4 2 1 6 6 C 1.38699 * 120.02965 * 354.91467 * 5 4 2 7 7 C 1.38149 * 119.97012 * 180.29922 * 6 5 4 8 8 C 1.38458 * 120.02780 * 359.44791 * 7 6 5 9 9 F 1.35097 * 119.97124 * 180.27594 * 8 7 6 10 10 C 1.38458 * 120.05741 * 0.25307 * 8 7 6 11 11 C 1.38143 * 120.03358 * 0.02562 * 10 8 7 12 12 C 1.50697 * 109.47339 * 120.00367 * 2 1 3 13 13 O 1.21279 * 119.99750 * 119.99699 * 12 2 1 14 14 N 1.34768 * 120.00162 * 300.00093 * 12 2 1 15 15 C 1.46497 * 120.00361 * 180.02562 * 14 12 2 16 16 C 1.52999 * 109.47267 * 179.97438 * 15 14 12 17 17 C 1.50704 * 109.47310 * 179.97438 * 16 15 14 18 18 H 1.08007 * 119.99397 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00072 * 179.97438 * 17 16 15 20 20 N 1.31524 * 119.99656 * 179.97438 * 19 17 16 21 21 Si 1.86789 * 120.00269 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47204 * 89.99955 * 21 19 17 23 23 H 1.48504 * 109.47518 * 210.00122 * 21 19 17 24 24 H 1.48505 * 109.47282 * 330.00364 * 21 19 17 25 25 H 1.09007 * 109.47134 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46897 * 299.99364 * 1 2 3 27 27 H 1.09003 * 109.47308 * 59.99885 * 1 2 3 28 28 H 1.08006 * 120.01966 * 0.02562 * 6 5 4 29 29 H 1.07998 * 119.98780 * 179.72403 * 7 6 5 30 30 H 1.07999 * 119.97776 * 180.02562 * 10 8 7 31 31 H 1.07999 * 120.02006 * 180.02562 * 11 10 8 32 32 H 0.97006 * 120.00172 * 359.97438 * 14 12 2 33 33 H 1.09007 * 109.46867 * 299.99678 * 15 14 12 34 34 H 1.08997 * 109.47350 * 59.99150 * 15 14 12 35 35 H 1.08996 * 109.47343 * 299.99344 * 16 15 14 36 36 H 1.08995 * 109.47284 * 59.99832 * 16 15 14 37 37 H 0.97004 * 119.99470 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0062 -0.6736 -1.1669 5 6 2.1058 0.0613 -2.3063 6 6 1.6539 1.3724 -2.3284 7 6 1.7500 2.1160 -3.4887 8 6 2.3075 1.5567 -4.6260 9 9 2.4060 2.2868 -5.7584 10 6 2.7646 0.2500 -4.6035 11 6 2.6645 -0.4978 -3.4462 12 6 2.0324 -0.7105 1.2304 13 8 2.7296 -1.6965 1.1190 14 7 1.7068 -0.2502 2.4545 15 6 2.1956 -0.9405 3.6506 16 6 1.6861 -0.2190 4.8999 17 6 2.1884 -0.9295 6.1303 18 1 2.8087 -1.8081 6.0311 19 6 1.8561 -0.4580 7.3826 20 7 2.2941 -1.0784 8.4564 21 14 0.7839 1.0619 7.5541 22 1 -0.6443 0.6575 7.5999 23 1 1.1361 1.7775 8.8068 24 1 1.0072 1.9590 6.3920 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.2231 1.8105 -1.4401 29 1 1.3942 3.1356 -3.5074 30 1 3.1996 -0.1849 -5.4912 31 1 3.0215 -1.5169 -3.4288 32 1 1.1494 0.5387 2.5436 33 1 1.8327 -1.9683 3.6507 34 1 3.2856 -0.9401 3.6504 35 1 2.0494 0.8086 4.8996 36 1 0.5961 -0.2190 4.9003 37 1 2.0606 -0.7464 9.3374 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272973613.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:37 Heat of formation + Delta-G solvation = -99.718364 kcal Electronic energy + Delta-G solvation = -20827.328168 eV Core-core repulsion = 17291.469357 eV Total energy + Delta-G solvation = -3535.858811 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.10822 -40.81944 -39.26976 -37.39617 -35.10152 -33.14174 -32.35920 -31.38970 -30.01305 -29.46936 -25.62663 -24.40992 -23.46080 -22.40288 -20.92172 -20.21455 -18.78039 -17.71456 -17.50947 -16.95354 -16.31201 -16.04535 -15.74751 -15.46469 -14.98728 -14.79961 -14.26266 -14.17838 -14.04001 -13.60906 -13.46593 -13.31078 -12.98423 -12.66725 -12.59365 -12.51010 -11.97407 -11.56382 -11.32049 -11.22413 -11.09905 -10.47354 -10.34587 -10.02468 -9.60918 -9.54292 -9.36253 -8.74354 -8.64039 -8.41418 -6.15847 -4.16567 0.78194 0.87096 2.48676 2.69390 3.20727 3.22115 3.27959 3.29571 3.58557 3.97937 4.28565 4.32657 4.35992 4.46980 4.60168 4.71314 4.76044 4.94064 5.09960 5.16761 5.29126 5.33713 5.51461 5.72097 5.77929 5.80130 5.87833 5.99380 6.11263 6.33556 6.46845 6.57713 6.97930 7.06804 7.14789 7.59804 7.70566 8.33470 8.40554 8.88317 9.43715 10.97138 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.038410 B = 0.002769 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.804872 B =10109.925188 C =10534.316196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.064 3.936 3 H 0.099 0.901 4 O -0.279 6.279 5 C 0.127 3.873 6 C -0.186 4.186 7 C -0.111 4.111 8 C 0.054 3.946 9 F -0.143 7.143 10 C -0.112 4.112 11 C -0.121 4.121 12 C 0.511 3.489 13 O -0.522 6.522 14 N -0.720 5.720 15 C 0.131 3.869 16 C -0.022 4.022 17 C -0.524 4.524 18 H 0.076 0.924 19 C 0.069 3.931 20 N -0.897 5.897 21 Si 0.883 3.117 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.266 1.266 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.141 0.859 29 H 0.138 0.862 30 H 0.142 0.858 31 H 0.144 0.856 32 H 0.397 0.603 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.022 0.978 36 H 0.018 0.982 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.305 7.774 -24.517 26.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.004 3.996 3 H 0.117 0.883 4 O -0.191 6.191 5 C 0.081 3.919 6 C -0.205 4.205 7 C -0.130 4.130 8 C 0.034 3.966 9 F -0.122 7.122 10 C -0.130 4.130 11 C -0.140 4.140 12 C 0.294 3.706 13 O -0.397 6.397 14 N -0.372 5.372 15 C 0.009 3.991 16 C -0.059 4.059 17 C -0.563 4.563 18 H 0.094 0.906 19 C -0.133 4.133 20 N -0.535 5.535 21 Si 0.710 3.290 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.191 1.191 25 H 0.096 0.904 26 H 0.101 0.899 27 H 0.092 0.908 28 H 0.159 0.841 29 H 0.156 0.844 30 H 0.160 0.840 31 H 0.162 0.838 32 H 0.230 0.770 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.041 0.959 36 H 0.036 0.964 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.734 6.853 -24.374 25.593 hybrid contribution -0.907 1.546 0.208 1.804 sum -4.640 8.399 -24.166 26.001 Atomic orbital electron populations 1.22363 0.92538 1.04746 1.03851 1.22328 0.95827 0.97157 0.84307 0.88341 1.86262 1.80663 1.36776 1.15448 1.19124 0.95286 0.90328 0.87164 1.21206 1.05763 0.93995 0.99534 1.20933 0.99695 1.00873 0.91463 1.17584 1.04909 0.90781 0.83281 1.91488 1.94573 1.77096 1.49012 1.20969 1.00491 0.92528 0.99050 1.20337 1.01940 1.01602 0.90123 1.19916 0.81333 0.85217 0.84110 1.90742 1.36977 1.25559 1.86407 1.46221 1.53181 1.32025 1.05765 1.21583 0.99136 0.96356 0.82025 1.19799 0.96498 0.96611 0.93020 1.20900 1.32966 1.13835 0.88581 0.90573 1.25006 0.95650 0.96892 0.95746 1.69908 1.45303 1.40314 0.97991 0.86745 0.80984 0.83513 0.77768 1.20202 1.21242 1.19104 0.90387 0.89900 0.90765 0.84149 0.84421 0.84007 0.83837 0.76976 0.91657 0.91684 0.95937 0.96351 0.92492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.51 9.06 37.16 0.34 -1.17 16 2 C 0.06 0.71 2.65 -27.88 -0.07 0.64 16 3 H 0.10 0.85 6.31 -51.93 -0.33 0.52 16 4 O -0.28 -3.61 9.34 -39.51 -0.37 -3.98 16 5 C 0.13 1.36 6.60 -39.24 -0.26 1.10 16 6 C -0.19 -1.61 8.23 -39.44 -0.32 -1.94 16 7 C -0.11 -0.92 10.02 -39.53 -0.40 -1.32 16 8 C 0.05 0.50 7.30 -39.42 -0.29 0.21 16 9 F -0.14 -1.42 17.27 2.25 0.04 -1.38 16 10 C -0.11 -0.95 10.02 -39.54 -0.40 -1.35 16 11 C -0.12 -1.16 9.98 -39.44 -0.39 -1.56 16 12 C 0.51 7.96 7.23 -10.99 -0.08 7.88 16 13 O -0.52 -10.58 16.50 -14.35 -0.24 -10.82 16 14 N -0.72 -10.85 5.45 -60.30 -0.33 -11.18 16 15 C 0.13 2.54 5.61 -4.04 -0.02 2.51 16 16 C -0.02 -0.47 4.16 -27.88 -0.12 -0.59 16 17 C -0.52 -14.31 9.66 -34.44 -0.33 -14.65 16 18 H 0.08 2.26 7.99 -52.48 -0.42 1.85 16 19 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 20 N -0.90 -26.87 13.96 55.43 0.77 -26.10 16 21 Si 0.88 20.44 27.47 -169.99 -4.67 15.78 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.27 -5.76 6.54 56.52 0.37 -5.40 16 25 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.08 0.57 7.56 -51.93 -0.39 0.18 16 27 H 0.07 0.51 6.90 -51.93 -0.36 0.15 16 28 H 0.14 0.93 5.43 -52.48 -0.28 0.65 16 29 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 30 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 31 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.40 4.67 7.89 -40.82 -0.32 4.35 16 33 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 36 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 37 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 320.48 15.07 4.83 4.83 Total: -1.00 -33.03 320.48 -6.98 -40.01 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -4.58 Total: 1.23 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -2.44 Total: -8.39 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.45 Total: -37.28 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.61 Total: -14.80 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.67 Total: 15.78 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.03 -6.98 -40.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272973613.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.711 kcal (2) G-P(sol) polarization free energy of solvation -33.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds