Wall clock time and date at job start Tue Mar 31 2020 05:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45190 * 1 3 3 C 1.34228 * 117.00111 * 2 1 4 4 O 1.20832 * 119.99725 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00322 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.47305 * 299.99920 * 5 3 2 7 7 N 1.46907 * 109.47216 * 180.02562 * 5 3 2 8 8 C 1.46900 * 111.00001 * 84.99821 * 7 5 3 9 9 C 1.53005 * 109.46887 * 180.02562 * 8 7 5 10 10 C 1.50696 * 109.46867 * 179.97438 * 9 8 7 11 11 H 1.08004 * 120.00248 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00109 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99523 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 120.00396 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47177 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.47023 * 119.99828 * 14 12 10 17 17 H 1.48495 * 109.47214 * 240.00190 * 14 12 10 18 18 C 1.50696 * 109.47302 * 60.00272 * 5 3 2 19 19 C 1.38248 * 119.97128 * 259.99948 * 18 5 3 20 20 C 1.38196 * 120.02483 * 179.97438 * 19 18 5 21 21 C 1.38458 * 119.97492 * 0.02562 * 20 19 18 22 22 F 1.35104 * 120.02786 * 179.97438 * 21 20 19 23 23 C 1.38465 * 119.94675 * 0.24873 * 21 20 19 24 24 C 1.38197 * 119.97511 * 359.47283 * 23 21 20 25 25 H 1.09005 * 109.46986 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47283 * 299.99106 * 1 2 3 27 27 H 1.08999 * 109.47655 * 59.99903 * 1 2 3 28 28 H 1.00901 * 110.99804 * 208.95498 * 7 5 3 29 29 H 1.08996 * 109.46914 * 299.99888 * 8 7 5 30 30 H 1.08998 * 109.47109 * 60.00410 * 8 7 5 31 31 H 1.09003 * 109.46939 * 299.99976 * 9 8 7 32 32 H 1.08998 * 109.46938 * 60.00272 * 9 8 7 33 33 H 0.97005 * 120.00111 * 179.97438 * 13 12 10 34 34 H 1.08002 * 119.98915 * 359.97438 * 19 18 5 35 35 H 1.07995 * 120.01604 * 180.02562 * 20 19 18 36 36 H 1.08007 * 120.01064 * 179.75151 * 23 21 20 37 37 H 1.07994 * 119.98821 * 180.29814 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2749 -0.0006 6 1 3.9563 0.7806 0.8891 7 7 3.9827 2.6837 0.0002 8 6 4.0179 3.2215 1.3667 9 6 4.4543 4.6875 1.3267 10 6 4.4898 5.2394 2.7285 11 1 4.2277 4.6077 3.5644 12 6 4.8578 6.5506 2.9441 13 7 5.1774 7.3196 1.9262 14 14 4.9025 7.2346 4.6817 15 1 4.5027 6.1743 5.6415 16 1 6.2789 7.6941 4.9975 17 1 3.9620 8.3789 4.7875 18 6 4.1046 0.5921 -1.2314 19 6 4.5991 -0.6961 -1.1461 20 6 5.0926 -1.3235 -2.2742 21 6 5.0922 -0.6612 -3.4901 22 9 5.5748 -1.2734 -4.5935 23 6 4.6019 0.6310 -3.5732 24 6 4.1036 1.2543 -2.4449 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 4.8755 2.7970 -0.4562 29 1 3.0250 3.1504 1.8108 30 1 4.7255 2.6476 1.9649 31 1 5.4471 4.7590 0.8824 32 1 3.7463 5.2611 0.7286 33 1 5.4360 8.2422 2.0778 34 1 4.5997 -1.2124 -0.1974 35 1 5.4785 -2.3299 -2.2074 36 1 4.6047 1.1501 -4.5204 37 1 3.7167 2.2605 -2.5104 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272973851.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:13 Heat of formation + Delta-G solvation = -125.238028 kcal Electronic energy + Delta-G solvation = -21407.439395 eV Core-core repulsion = 17870.473968 eV Total energy + Delta-G solvation = -3536.965427 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.91024 -41.71659 -40.07886 -37.93143 -36.95819 -35.18579 -33.05915 -32.14505 -30.43278 -29.14571 -27.18708 -25.60377 -24.03805 -23.39553 -22.38991 -21.49966 -18.96402 -18.57578 -18.54998 -17.76579 -17.61286 -17.16061 -16.74990 -16.58701 -16.29439 -15.96585 -15.41577 -15.19798 -14.62014 -14.49231 -14.40376 -14.24606 -14.11001 -13.84591 -13.35411 -13.18372 -12.98951 -12.86360 -12.71430 -12.37265 -12.06964 -11.92808 -11.76356 -11.62171 -11.41649 -11.27270 -10.56792 -10.08164 -9.66037 -9.49407 -8.20027 -6.31223 0.00173 0.26186 1.20147 1.40511 1.41522 1.54407 1.64703 2.40478 2.53934 3.13902 3.21451 3.23717 3.46352 3.77746 3.88728 3.97220 4.08661 4.32664 4.32891 4.34304 4.44051 4.48767 4.55338 4.70180 4.90009 4.97629 5.03628 5.13323 5.20029 5.34806 5.37391 5.46660 5.64217 5.74538 5.86253 5.99688 6.19224 6.39148 6.81648 6.85627 7.37887 8.92443 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.018260 B = 0.003921 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.004843 B = 7139.956163 C = 8160.057043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.464 3.536 4 O -0.517 6.517 5 C 0.145 3.855 6 H 0.111 0.889 7 N -0.678 5.678 8 C 0.087 3.913 9 C 0.034 3.966 10 C -0.543 4.543 11 H 0.061 0.939 12 C 0.001 3.999 13 N -0.931 5.931 14 Si 0.967 3.033 15 H -0.261 1.261 16 H -0.275 1.275 17 H -0.280 1.280 18 C -0.111 4.111 19 C -0.060 4.060 20 C -0.148 4.148 21 C 0.092 3.908 22 F -0.145 7.145 23 C -0.157 4.157 24 C -0.076 4.076 25 H 0.137 0.863 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.359 0.641 29 H 0.048 0.952 30 H 0.038 0.962 31 H -0.001 1.001 32 H -0.011 1.011 33 H 0.264 0.736 34 H 0.163 0.837 35 H 0.164 0.836 36 H 0.148 0.852 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.776 -21.611 -7.752 23.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.305 3.695 4 O -0.404 6.404 5 C 0.034 3.966 6 H 0.128 0.872 7 N -0.313 5.313 8 C -0.041 4.041 9 C -0.004 4.004 10 C -0.582 4.582 11 H 0.079 0.921 12 C -0.197 4.197 13 N -0.571 5.571 14 Si 0.791 3.209 15 H -0.185 1.185 16 H -0.201 1.201 17 H -0.206 1.206 18 C -0.111 4.111 19 C -0.078 4.078 20 C -0.167 4.167 21 C 0.073 3.927 22 F -0.124 7.124 23 C -0.176 4.176 24 C -0.095 4.095 25 H 0.155 0.845 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.181 0.819 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.018 0.982 32 H 0.008 0.992 33 H 0.072 0.928 34 H 0.181 0.819 35 H 0.181 0.819 36 H 0.166 0.834 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.571 -20.933 -7.966 22.681 hybrid contribution 0.516 0.666 0.674 1.079 sum -3.055 -20.267 -7.292 21.755 Atomic orbital electron populations 1.23517 0.75104 1.05688 1.02131 1.86468 1.24622 1.32281 1.83990 1.23992 0.92194 0.81364 0.71937 1.90695 1.67206 1.37652 1.44883 1.19844 0.87325 0.90645 0.98815 0.87189 1.59952 1.36763 1.14350 1.20213 1.21854 0.99149 0.96148 0.86982 1.18876 0.94682 0.91164 0.95628 1.21619 1.45695 0.97036 0.93835 0.92108 1.25962 0.94722 0.97437 1.01567 1.70116 1.46847 1.07591 1.32571 0.85375 0.77893 0.78334 0.79285 1.18502 1.20087 1.20632 1.19515 1.02560 0.95902 0.93151 1.21146 0.94396 0.92468 0.99823 1.21363 1.02576 1.02263 0.90473 1.17981 0.99005 0.92172 0.83538 1.91492 1.85829 1.82944 1.52086 1.21266 1.01592 0.94134 1.00602 1.21002 0.96844 1.00282 0.91357 0.84459 0.92507 0.92507 0.81860 0.93378 0.94413 0.98245 0.99228 0.92761 0.81907 0.81867 0.83430 0.85158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.55 113.37 1.20 1.75 16 2 O -0.36 -8.83 10.48 -51.40 -0.54 -9.37 16 3 C 0.46 14.39 7.11 71.24 0.51 14.89 16 4 O -0.52 -20.58 15.67 21.95 0.34 -20.24 16 5 C 0.14 3.97 2.73 43.42 0.12 4.08 16 6 H 0.11 2.55 7.66 -2.39 -0.02 2.53 16 7 N -0.68 -23.71 5.23 -499.36 -2.61 -26.32 16 8 C 0.09 3.66 5.32 86.30 0.46 4.12 16 9 C 0.03 1.83 5.23 29.85 0.16 1.99 16 10 C -0.54 -31.33 9.11 25.60 0.23 -31.09 16 11 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 12 C 0.00 0.06 5.46 84.66 0.46 0.53 16 13 N -0.93 -57.38 13.29 21.45 0.28 -57.10 16 14 Si 0.97 44.62 29.54 68.60 2.03 46.64 16 15 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 16 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 18 C -0.11 -2.49 4.64 -19.86 -0.09 -2.58 16 19 C -0.06 -1.01 9.67 22.26 0.22 -0.80 16 20 C -0.15 -2.38 10.03 22.31 0.22 -2.16 16 21 C 0.09 1.82 7.30 22.38 0.16 1.98 16 22 F -0.14 -3.00 17.27 44.97 0.78 -2.23 16 23 C -0.16 -3.25 10.03 22.31 0.22 -3.03 16 24 C -0.08 -1.80 9.00 22.26 0.20 -1.60 16 25 H 0.14 1.50 8.14 -2.38 -0.02 1.48 16 26 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 27 H 0.06 1.14 8.13 -2.39 -0.02 1.12 16 28 H 0.36 11.68 7.99 -89.69 -0.72 10.96 16 29 H 0.05 2.16 7.62 -2.39 -0.02 2.15 16 30 H 0.04 1.45 8.05 -2.39 -0.02 1.43 16 31 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 32 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 33 H 0.26 15.19 8.31 -92.70 -0.77 14.42 16 34 H 0.16 1.86 8.04 -2.91 -0.02 1.84 16 35 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 36 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 37 H 0.13 3.45 7.72 -2.91 -0.02 3.43 16 Total: -1.00 -72.16 328.91 4.71 -67.44 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.37 Total: 13.09 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: 4.07 Total: -11.93 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -2.33 Total: -83.42 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.19 Total: -29.61 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.78 Total: -2.23 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -72.16 4.71 -67.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272973851.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.793 kcal (2) G-P(sol) polarization free energy of solvation -72.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds