Wall clock time and date at job start Tue Mar 31 2020 05:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35944 * 117.00656 * 2 1 4 4 C 1.38734 * 120.02603 * 0.02562 * 3 2 1 5 5 C 1.38118 * 119.97120 * 179.97438 * 4 3 2 6 6 C 1.38482 * 120.03175 * 359.97438 * 5 4 3 7 7 F 1.35101 * 119.97206 * 179.97438 * 6 5 4 8 8 C 1.38432 * 120.05577 * 359.78943 * 6 5 4 9 9 C 1.38172 * 120.03031 * 0.46314 * 8 6 5 10 10 C 1.50703 * 120.01277 * 179.79239 * 9 8 6 11 11 C 1.50701 * 109.47064 * 264.72240 * 10 9 8 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99566 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46983 * 180.02562 * 14 13 11 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08006 * 119.99920 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00428 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99996 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00227 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46845 * 90.00227 * 20 18 16 22 22 H 1.48499 * 109.46907 * 209.99714 * 20 18 16 23 23 H 1.48495 * 109.46933 * 330.00015 * 20 18 16 24 24 H 1.08996 * 109.47161 * 59.99848 * 1 2 3 25 25 H 1.09000 * 109.47200 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47039 * 299.99874 * 1 2 3 27 27 H 1.08004 * 120.01233 * 359.97438 * 4 3 2 28 28 H 1.08005 * 119.98847 * 179.97438 * 5 4 3 29 29 H 1.07999 * 119.98211 * 180.23340 * 8 6 5 30 30 H 1.09002 * 109.47152 * 144.72333 * 10 9 8 31 31 H 1.09001 * 109.46980 * 24.72433 * 10 9 8 32 32 H 0.96995 * 120.00011 * 0.02562 * 13 11 10 33 33 H 1.09001 * 109.47487 * 300.00114 * 14 13 11 34 34 H 1.09002 * 109.47182 * 60.00342 * 14 13 11 35 35 H 1.09001 * 109.47289 * 299.99909 * 15 14 13 36 36 H 1.09002 * 109.47153 * 59.99993 * 15 14 13 37 37 H 0.96993 * 120.00405 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2112 0.0000 4 6 1.2914 2.3752 0.0005 5 6 1.9197 3.6051 0.0011 6 6 3.3027 3.6769 0.0016 7 9 3.9161 4.8806 0.0016 8 6 4.0572 2.5162 0.0060 9 6 3.4311 1.2845 0.0002 10 6 4.2529 0.0212 0.0003 11 6 4.4231 -0.4674 -1.4151 12 8 3.9264 0.1497 -2.3335 13 7 5.1281 -1.5896 -1.6604 14 6 5.2940 -2.0642 -3.0364 15 6 6.1282 -3.3468 -3.0364 16 6 6.2994 -3.8348 -4.4518 17 1 5.8571 -3.2853 -5.2697 18 6 7.0198 -4.9833 -4.7027 19 7 7.5581 -5.6527 -3.7068 20 14 7.2314 -5.5885 -6.4573 21 1 8.4571 -4.9888 -7.0433 22 1 7.3551 -7.0684 -6.4589 23 1 6.0505 -5.1895 -7.2643 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2127 2.3195 0.0005 28 1 1.3323 4.5114 0.0011 29 1 5.1356 2.5736 0.0102 30 1 3.7453 -0.7424 0.5897 31 1 5.2317 0.2246 0.4347 32 1 5.5256 -2.0829 -0.9259 33 1 4.3153 -2.2678 -3.4711 34 1 5.8015 -1.3003 -3.6256 35 1 7.1069 -3.1437 -2.6016 36 1 5.6203 -4.1105 -2.4473 37 1 8.0646 -6.4608 -3.8832 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274745837.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:54 Heat of formation + Delta-G solvation = -108.585471 kcal Electronic energy + Delta-G solvation = -21086.412394 eV Core-core repulsion = 17550.169076 eV Total energy + Delta-G solvation = -3536.243318 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.90218 -40.53014 -38.96144 -37.34253 -34.82470 -33.07711 -32.76785 -30.11396 -29.74692 -27.98629 -27.15044 -24.63816 -22.59858 -22.17434 -20.92547 -20.01530 -18.23269 -17.26015 -17.12002 -16.83667 -16.27524 -15.82474 -15.49035 -15.12618 -14.99831 -14.83722 -14.56657 -14.44034 -13.66145 -13.31781 -13.21291 -12.91077 -12.90544 -12.38861 -12.27207 -12.06081 -11.70956 -11.19075 -11.09371 -11.01871 -11.01536 -10.63032 -10.30237 -9.78884 -9.50823 -9.28567 -9.03835 -8.51406 -8.32063 -8.17683 -6.08622 -4.11309 0.96757 1.09102 3.06897 3.08960 3.29968 3.31398 3.36136 3.40552 3.87108 4.15431 4.40328 4.43638 4.51558 4.80298 4.87092 4.95796 5.08091 5.21859 5.28290 5.28400 5.31368 5.33818 5.51891 5.76461 5.91714 5.94722 6.15948 6.37808 6.38157 6.55359 6.76795 6.97138 7.15893 7.53473 7.63550 7.89907 8.06667 8.29482 8.72038 8.94853 9.53459 11.02993 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.026227 B = 0.003124 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.336720 B = 8961.839863 C = 9465.184636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.307 6.307 3 C 0.136 3.864 4 C -0.182 4.182 5 C -0.116 4.116 6 C 0.059 3.941 7 F -0.143 7.143 8 C -0.103 4.103 9 C -0.062 4.062 10 C -0.098 4.098 11 C 0.510 3.490 12 O -0.544 6.544 13 N -0.724 5.724 14 C 0.123 3.877 15 C 0.012 3.988 16 C -0.521 4.521 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 H 0.056 0.944 25 H 0.102 0.898 26 H 0.055 0.945 27 H 0.137 0.863 28 H 0.136 0.864 29 H 0.141 0.859 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.397 0.603 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.261 14.615 13.031 23.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.220 6.220 3 C 0.090 3.910 4 C -0.201 4.201 5 C -0.135 4.135 6 C 0.040 3.960 7 F -0.122 7.122 8 C -0.122 4.122 9 C -0.063 4.063 10 C -0.138 4.138 11 C 0.295 3.705 12 O -0.422 6.422 13 N -0.374 5.374 14 C 0.000 4.000 15 C -0.025 4.025 16 C -0.560 4.560 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.724 3.276 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 H 0.075 0.925 25 H 0.120 0.880 26 H 0.073 0.927 27 H 0.155 0.845 28 H 0.154 0.846 29 H 0.159 0.841 30 H 0.126 0.874 31 H 0.121 0.879 32 H 0.231 0.769 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.411 14.728 12.380 22.895 hybrid contribution 0.226 -0.309 -0.623 0.732 sum -12.184 14.419 11.756 22.239 Atomic orbital electron populations 1.23092 0.78259 1.04271 1.01211 1.86120 1.21410 1.26242 1.88214 1.18770 0.91623 0.84562 0.96037 1.21009 1.00280 0.91292 1.07479 1.20857 0.92661 0.98595 1.01346 1.17451 0.90803 0.80486 1.07260 1.91481 1.83344 1.42923 1.94411 1.20828 1.00711 0.90056 1.00562 1.18464 0.90332 0.94268 1.03279 1.20553 1.01136 0.95712 0.96416 1.20318 0.78679 0.81044 0.90414 1.90682 1.48497 1.56744 1.46272 1.46298 1.53728 1.26147 1.11196 1.21694 1.00431 0.97961 0.79873 1.19322 0.94726 0.90334 0.98111 1.21063 1.33373 1.09207 0.92353 0.92288 1.24997 0.95417 0.96525 0.97355 1.69954 1.34991 1.17485 1.30911 0.86516 0.78647 0.77817 0.84602 1.20556 1.21173 1.19734 0.92487 0.88011 0.92692 0.84527 0.84646 0.84076 0.87403 0.87900 0.76909 0.92694 0.92682 0.95945 0.95925 0.92858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.78 9.63 -19.56 -0.19 -3.97 16 3 C 0.14 1.71 6.66 -39.24 -0.26 1.45 16 4 C -0.18 -1.91 9.04 -39.44 -0.36 -2.26 16 5 C -0.12 -1.22 10.02 -39.54 -0.40 -1.61 16 6 C 0.06 0.72 7.30 -39.42 -0.29 0.43 16 7 F -0.14 -1.78 17.27 2.25 0.04 -1.74 16 8 C -0.10 -1.26 9.65 -39.53 -0.38 -1.65 16 9 C -0.06 -0.81 4.39 -104.48 -0.46 -1.27 16 10 C -0.10 -1.21 5.55 -29.03 -0.16 -1.37 16 11 C 0.51 8.72 7.82 -10.98 -0.09 8.63 16 12 O -0.54 -11.50 16.03 5.56 0.09 -11.41 16 13 N -0.72 -12.65 5.56 -60.30 -0.33 -12.98 16 14 C 0.12 2.65 5.61 -4.04 -0.02 2.62 16 15 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 16 C -0.52 -14.55 9.11 -34.44 -0.31 -14.87 16 17 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 20 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 25 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.32 7.66 -51.93 -0.40 -0.07 16 27 H 0.14 1.05 6.30 -52.48 -0.33 0.72 16 28 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 29 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 30 H 0.11 1.17 7.69 -51.93 -0.40 0.77 16 31 H 0.10 0.98 8.05 -51.93 -0.42 0.56 16 32 H 0.40 5.89 8.47 -40.82 -0.35 5.54 16 33 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 326.85 15.07 4.93 4.93 Total: -1.00 -33.61 326.85 -6.52 -40.12 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -4.79 Total: 1.01 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -1.97 Total: -6.96 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.40 Total: -38.41 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.10 Total: -15.38 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.61 -6.52 -40.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274745837.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.463 kcal (2) G-P(sol) polarization free energy of solvation -33.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds