Wall clock time and date at job start Tue Mar 31 2020 05:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35944 * 117.00656 * 2 1 4 4 C 1.38734 * 120.02603 * 0.02562 * 3 2 1 5 5 C 1.38118 * 119.97120 * 179.97438 * 4 3 2 6 6 C 1.38482 * 120.03175 * 359.97438 * 5 4 3 7 7 F 1.35101 * 119.97206 * 179.97438 * 6 5 4 8 8 C 1.38432 * 120.05577 * 359.78943 * 6 5 4 9 9 C 1.38172 * 120.03031 * 0.46314 * 8 6 5 10 10 C 1.50703 * 120.01277 * 179.79239 * 9 8 6 11 11 C 1.50701 * 109.47064 * 264.72240 * 10 9 8 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99566 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46983 * 180.02562 * 14 13 11 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08006 * 119.99920 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00428 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99996 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00227 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46845 * 90.00227 * 20 18 16 22 22 H 1.48499 * 109.46907 * 209.99714 * 20 18 16 23 23 H 1.48495 * 109.46933 * 330.00015 * 20 18 16 24 24 H 1.08996 * 109.47161 * 59.99848 * 1 2 3 25 25 H 1.09000 * 109.47200 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47039 * 299.99874 * 1 2 3 27 27 H 1.08004 * 120.01233 * 359.97438 * 4 3 2 28 28 H 1.08005 * 119.98847 * 179.97438 * 5 4 3 29 29 H 1.07999 * 119.98211 * 180.23340 * 8 6 5 30 30 H 1.09002 * 109.47152 * 144.72333 * 10 9 8 31 31 H 1.09001 * 109.46980 * 24.72433 * 10 9 8 32 32 H 0.96995 * 120.00011 * 0.02562 * 13 11 10 33 33 H 1.09001 * 109.47487 * 300.00114 * 14 13 11 34 34 H 1.09002 * 109.47182 * 60.00342 * 14 13 11 35 35 H 1.09001 * 109.47289 * 299.99909 * 15 14 13 36 36 H 1.09002 * 109.47153 * 59.99993 * 15 14 13 37 37 H 0.96993 * 120.00405 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2112 0.0000 4 6 1.2914 2.3752 0.0005 5 6 1.9197 3.6051 0.0011 6 6 3.3027 3.6769 0.0016 7 9 3.9161 4.8806 0.0016 8 6 4.0572 2.5162 0.0060 9 6 3.4311 1.2845 0.0002 10 6 4.2529 0.0212 0.0003 11 6 4.4231 -0.4674 -1.4151 12 8 3.9264 0.1497 -2.3335 13 7 5.1281 -1.5896 -1.6604 14 6 5.2940 -2.0642 -3.0364 15 6 6.1282 -3.3468 -3.0364 16 6 6.2994 -3.8348 -4.4518 17 1 5.8571 -3.2853 -5.2697 18 6 7.0198 -4.9833 -4.7027 19 7 7.5581 -5.6527 -3.7068 20 14 7.2314 -5.5885 -6.4573 21 1 8.4571 -4.9888 -7.0433 22 1 7.3551 -7.0684 -6.4589 23 1 6.0505 -5.1895 -7.2643 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2127 2.3195 0.0005 28 1 1.3323 4.5114 0.0011 29 1 5.1356 2.5736 0.0102 30 1 3.7453 -0.7424 0.5897 31 1 5.2317 0.2246 0.4347 32 1 5.5256 -2.0829 -0.9259 33 1 4.3153 -2.2678 -3.4711 34 1 5.8015 -1.3003 -3.6256 35 1 7.1069 -3.1437 -2.6016 36 1 5.6203 -4.1105 -2.4473 37 1 8.0646 -6.4608 -3.8832 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274745837.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:53 Heat of formation + Delta-G solvation = -130.655711 kcal Electronic energy + Delta-G solvation = -21087.369431 eV Core-core repulsion = 17550.169076 eV Total energy + Delta-G solvation = -3537.200355 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.81929 -41.46234 -40.28072 -38.20098 -36.55822 -34.79539 -34.00543 -31.66480 -30.81963 -29.02667 -27.97034 -26.50846 -23.59214 -23.21837 -22.63874 -21.36950 -19.05968 -18.59829 -18.19869 -18.01698 -17.87304 -16.73852 -16.61789 -16.46133 -16.37563 -16.33313 -15.65107 -15.41978 -15.06110 -14.65057 -14.37373 -14.22359 -14.03507 -13.70645 -13.24235 -13.18320 -12.98558 -12.80274 -12.67445 -12.52894 -12.20525 -11.86540 -11.81403 -11.64637 -11.46004 -10.88079 -10.60030 -10.03344 -9.97144 -9.05590 -8.23925 -6.34363 0.10714 0.21034 1.41788 1.42187 1.53731 1.73211 2.23452 2.33068 2.43045 2.70394 3.10651 3.27137 3.55893 3.71713 3.97352 4.10315 4.14765 4.34864 4.41210 4.41896 4.44680 4.51931 4.54977 4.71675 4.74141 4.86033 4.88726 5.09359 5.11140 5.28365 5.32472 5.51729 5.59517 5.71462 5.79783 6.17134 6.36584 6.68935 6.78878 7.34899 7.35159 8.87855 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.026227 B = 0.003124 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.336720 B = 8961.839863 C = 9465.184636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.330 6.330 3 C 0.123 3.877 4 C -0.181 4.181 5 C -0.111 4.111 6 C 0.039 3.961 7 F -0.149 7.149 8 C -0.111 4.111 9 C -0.088 4.088 10 C -0.086 4.086 11 C 0.510 3.490 12 O -0.587 6.587 13 N -0.719 5.719 14 C 0.142 3.858 15 C 0.023 3.977 16 C -0.548 4.548 17 H 0.057 0.943 18 C 0.008 3.992 19 N -0.926 5.926 20 Si 0.964 3.036 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.267 1.267 24 H 0.060 0.940 25 H 0.113 0.887 26 H 0.078 0.922 27 H 0.166 0.834 28 H 0.162 0.838 29 H 0.150 0.850 30 H 0.125 0.875 31 H 0.134 0.866 32 H 0.412 0.588 33 H 0.041 0.959 34 H 0.043 0.957 35 H 0.010 0.990 36 H 0.009 0.991 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.174 15.046 13.395 24.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.077 3.923 4 C -0.199 4.199 5 C -0.129 4.129 6 C 0.020 3.980 7 F -0.128 7.128 8 C -0.129 4.129 9 C -0.089 4.089 10 C -0.125 4.125 11 C 0.298 3.702 12 O -0.467 6.467 13 N -0.370 5.370 14 C 0.018 3.982 15 C -0.014 4.014 16 C -0.587 4.587 17 H 0.075 0.925 18 C -0.191 4.191 19 N -0.565 5.565 20 Si 0.789 3.211 21 H -0.198 1.198 22 H -0.204 1.204 23 H -0.191 1.191 24 H 0.078 0.922 25 H 0.131 0.869 26 H 0.097 0.903 27 H 0.183 0.817 28 H 0.179 0.821 29 H 0.168 0.832 30 H 0.143 0.857 31 H 0.152 0.848 32 H 0.248 0.752 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.028 0.972 36 H 0.028 0.972 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.326 15.160 12.779 23.890 hybrid contribution 0.444 -0.423 -0.701 0.932 sum -12.882 14.737 12.078 23.000 Atomic orbital electron populations 1.23377 0.76319 1.05572 1.02491 1.86081 1.23571 1.26443 1.88211 1.19048 0.91896 0.85379 0.96022 1.21341 1.01696 0.90514 1.06366 1.21196 0.92241 0.99748 0.99762 1.17693 0.91672 0.80281 1.08343 1.91462 1.83561 1.43158 1.94575 1.20999 1.01396 0.90123 1.00412 1.18627 0.90981 0.94485 1.04787 1.20535 1.03117 0.95976 0.92898 1.21143 0.77079 0.79895 0.92104 1.90657 1.50042 1.57842 1.48157 1.46125 1.54201 1.26752 1.09918 1.21168 0.98761 0.96117 0.82134 1.19128 0.94347 0.91334 0.96609 1.21476 1.33732 1.09783 0.93665 0.92507 1.25862 0.94929 0.96613 1.01706 1.70052 1.35490 1.17940 1.33046 0.85456 0.78834 0.77442 0.79386 1.19761 1.20413 1.19143 0.92181 0.86877 0.90338 0.81695 0.82075 0.83197 0.85702 0.84819 0.75218 0.94012 0.93854 0.97189 0.97232 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -7.67 9.63 -92.92 -0.89 -8.57 16 3 C 0.12 2.92 6.66 22.49 0.15 3.07 16 4 C -0.18 -3.41 9.04 22.36 0.20 -3.21 16 5 C -0.11 -2.12 10.02 22.30 0.22 -1.89 16 6 C 0.04 0.91 7.30 22.37 0.16 1.08 16 7 F -0.15 -3.60 17.27 44.97 0.78 -2.82 16 8 C -0.11 -2.63 9.65 22.30 0.22 -2.42 16 9 C -0.09 -2.19 4.39 -19.77 -0.09 -2.28 16 10 C -0.09 -2.00 5.55 29.10 0.16 -1.84 16 11 C 0.51 17.18 7.82 87.66 0.69 17.87 16 12 O -0.59 -24.94 16.03 -3.03 -0.05 -24.99 16 13 N -0.72 -24.95 5.56 -463.06 -2.57 -27.53 16 14 C 0.14 6.23 5.61 86.38 0.48 6.72 16 15 C 0.02 1.18 5.09 29.85 0.15 1.33 16 16 C -0.55 -30.93 9.11 25.60 0.23 -30.69 16 17 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 18 C 0.01 0.44 5.46 84.65 0.46 0.90 16 19 N -0.93 -54.32 13.29 21.45 0.28 -54.04 16 20 Si 0.96 43.80 29.54 68.60 2.03 45.82 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 23 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 24 H 0.06 0.79 7.66 -2.39 -0.02 0.78 16 25 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.08 0.71 7.66 -2.39 -0.02 0.69 16 27 H 0.17 2.02 6.30 -2.91 -0.02 2.00 16 28 H 0.16 2.14 8.06 -2.91 -0.02 2.11 16 29 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 30 H 0.12 2.48 7.69 -2.39 -0.02 2.47 16 31 H 0.13 2.24 8.05 -2.39 -0.02 2.22 16 32 H 0.41 11.91 8.47 -92.71 -0.79 11.12 16 33 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -72.51 326.85 4.04 -68.47 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 0.31 Total: 13.66 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: 4.16 Total: -10.01 kcal Atomic # 7 Polarization: -79.28 SS G_CDS: -2.29 Total: -81.56 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -0.94 Total: -33.55 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.78 Total: -2.82 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -72.51 4.04 -68.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274745837.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.187 kcal (2) G-P(sol) polarization free energy of solvation -72.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds