Wall clock time and date at job start Tue Mar 31 2020 05:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36030 * 116.99949 * 2 1 4 4 C 1.38649 * 119.98932 * 359.97438 * 3 2 1 5 5 C 1.38127 * 120.04081 * 179.97438 * 4 3 2 6 6 C 1.38855 * 120.01758 * 0.02800 * 5 4 3 7 7 N 1.40098 * 120.00322 * 179.97438 * 6 5 4 8 8 C 1.46503 * 119.99794 * 247.17254 * 7 6 5 9 9 C 1.34776 * 120.00275 * 67.17122 * 7 6 5 10 10 O 1.21286 * 120.00011 * 354.72424 * 9 7 6 11 11 C 1.50702 * 120.00075 * 174.72407 * 9 7 6 12 12 C 1.52997 * 109.47355 * 180.02562 * 11 9 7 13 13 C 1.50698 * 109.47543 * 179.97438 * 12 11 9 14 14 H 1.08006 * 119.99769 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00159 * 179.97438 * 13 12 11 16 16 N 1.31521 * 120.00336 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00092 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47415 * 89.99611 * 17 15 13 19 19 H 1.48504 * 109.47163 * 209.99966 * 17 15 13 20 20 H 1.48502 * 109.46795 * 329.99922 * 17 15 13 21 21 C 1.38827 * 119.98672 * 0.25223 * 6 5 4 22 22 C 1.38267 * 119.96158 * 359.44485 * 21 6 5 23 23 F 1.35104 * 120.01561 * 180.29838 * 22 21 6 24 24 H 1.09001 * 109.46809 * 60.01080 * 1 2 3 25 25 H 1.09000 * 109.46863 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47404 * 300.00874 * 1 2 3 27 27 H 1.07997 * 119.98512 * 0.02562 * 4 3 2 28 28 H 1.08001 * 119.99193 * 180.02562 * 5 4 3 29 29 H 1.09002 * 109.47325 * 269.99927 * 8 7 6 30 30 H 1.09001 * 109.46996 * 30.00120 * 8 7 6 31 31 H 1.09008 * 109.46996 * 149.99928 * 8 7 6 32 32 H 1.08998 * 109.47529 * 59.99676 * 11 9 7 33 33 H 1.09003 * 109.46961 * 299.99974 * 11 9 7 34 34 H 1.09003 * 109.46765 * 299.99727 * 12 11 9 35 35 H 1.08998 * 109.47366 * 59.99209 * 12 11 9 36 36 H 0.96989 * 120.00311 * 180.02562 * 16 15 13 37 37 H 1.07999 * 120.01585 * 179.75220 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2120 0.0000 4 6 1.2912 2.3747 -0.0005 5 6 1.9172 3.6060 0.0000 6 6 3.3037 3.6804 0.0005 7 7 3.9383 4.9294 0.0005 8 6 4.7094 5.3592 -1.1687 9 6 3.8395 5.7355 1.0760 10 8 3.1243 5.4231 2.0044 11 6 4.6176 7.0252 1.1251 12 6 4.3293 7.7449 2.4441 13 6 5.1078 9.0343 2.4935 14 1 5.7443 9.3128 1.6666 15 6 5.0068 9.8589 3.5938 16 7 4.2313 9.5201 4.6006 17 14 5.9713 11.4574 3.6548 18 1 5.1544 12.5511 3.0702 19 1 6.2991 11.7843 5.0658 20 1 7.2272 11.3076 2.8767 21 6 4.0610 2.5168 -0.0049 22 6 3.4337 1.2846 0.0009 23 9 4.1696 0.1516 0.0018 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8898 27 1 0.2127 2.3177 -0.0005 28 1 1.3280 4.5112 0.0000 29 1 5.7449 5.0369 -1.0596 30 1 4.2833 4.9149 -2.0683 31 1 4.6735 6.4458 -1.2482 32 1 4.3201 7.6610 0.2913 33 1 5.6837 6.8092 1.0550 34 1 3.2632 7.9609 2.5146 35 1 4.6270 7.1089 3.2777 36 1 4.1599 10.1003 5.3745 37 1 5.1394 2.5741 -0.0085 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291405733.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:36 Heat of formation + Delta-G solvation = -89.760105 kcal Electronic energy + Delta-G solvation = -21325.211464 eV Core-core repulsion = 17789.784475 eV Total energy + Delta-G solvation = -3535.426988 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.87520 -40.54268 -39.49954 -37.42904 -34.98327 -33.52592 -31.19710 -30.92015 -29.64941 -27.69385 -26.54027 -25.61708 -23.09217 -22.82571 -21.20788 -19.08040 -18.46824 -17.37898 -17.22538 -16.73422 -16.30553 -15.83022 -15.58243 -15.19497 -15.15639 -14.97006 -14.45454 -14.44000 -13.52256 -13.41895 -12.94615 -12.76900 -12.51625 -12.40170 -12.23690 -12.19467 -12.01368 -11.42661 -11.30997 -11.15017 -10.95100 -10.61805 -9.99812 -9.69320 -9.32490 -9.16620 -9.07723 -8.92406 -8.34936 -8.07676 -5.98545 -4.03322 0.96705 1.02596 2.86976 3.03302 3.08646 3.31748 3.37721 3.38228 3.40621 4.09879 4.44943 4.53167 4.71652 4.86968 4.93862 5.00537 5.05413 5.18059 5.28430 5.32814 5.36478 5.41205 5.47012 5.67824 5.79702 5.96850 6.12360 6.14106 6.24790 6.31447 6.75646 6.86401 7.10216 7.51996 7.71053 7.81357 8.03445 8.34020 8.60520 9.04762 9.60482 11.12383 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.034071 B = 0.003217 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.612272 B = 8702.662357 C = 9016.154642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.311 6.311 3 C 0.088 3.912 4 C -0.170 4.170 5 C -0.074 4.074 6 C 0.145 3.855 7 N -0.590 5.590 8 C 0.082 3.918 9 C 0.513 3.487 10 O -0.517 6.517 11 C -0.125 4.125 12 C 0.036 3.964 13 C -0.528 4.528 14 H 0.056 0.944 15 C 0.058 3.942 16 N -0.889 5.889 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.121 4.121 22 C 0.078 3.922 23 F -0.132 7.132 24 H 0.057 0.943 25 H 0.101 0.899 26 H 0.059 0.941 27 H 0.141 0.859 28 H 0.135 0.865 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.024 0.976 35 H 0.024 0.976 36 H 0.261 0.739 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.922 -16.034 -14.581 22.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.225 6.225 3 C 0.042 3.958 4 C -0.190 4.190 5 C -0.094 4.094 6 C 0.054 3.946 7 N -0.323 5.323 8 C -0.060 4.060 9 C 0.304 3.696 10 O -0.389 6.389 11 C -0.165 4.165 12 C -0.001 4.001 13 C -0.566 4.566 14 H 0.075 0.925 15 C -0.144 4.144 16 N -0.528 5.528 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.142 4.142 22 C 0.057 3.943 23 F -0.111 7.111 24 H 0.076 0.924 25 H 0.120 0.880 26 H 0.077 0.923 27 H 0.159 0.841 28 H 0.153 0.847 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.071 0.929 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.246 -16.325 -13.869 22.054 hybrid contribution 0.436 0.822 0.065 0.933 sum -4.809 -15.503 -13.804 21.308 Atomic orbital electron populations 1.23117 0.77959 1.04172 1.01656 1.86135 1.21704 1.25752 1.88899 1.18958 0.90706 0.85600 1.00504 1.20996 1.00324 0.90922 1.06717 1.21177 0.93661 0.97781 0.96745 1.17229 0.90717 0.85084 1.01607 1.45784 1.53210 1.15408 1.17874 1.21861 0.95577 1.01737 0.86821 1.21851 0.81738 0.85803 0.80215 1.90699 1.38495 1.73867 1.35887 1.21920 0.99067 0.91235 1.04271 1.18928 0.97774 0.94108 0.89339 1.21194 1.27228 1.04936 1.03234 0.92549 1.25026 0.95483 0.98195 0.95661 1.69994 1.38146 1.37517 1.07117 0.86585 0.80299 0.83780 0.77248 1.20663 1.21212 1.19861 1.21045 1.01236 0.89612 1.02279 1.16625 0.85821 0.82557 1.09258 1.91498 1.76547 1.48679 1.94347 0.92433 0.88024 0.92263 0.84131 0.84714 0.92347 0.91257 0.89756 0.89928 0.89886 0.95793 0.95770 0.92910 0.83768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.64 10.36 -19.84 -0.21 -3.85 16 3 C 0.09 1.12 6.69 -39.18 -0.26 0.86 16 4 C -0.17 -1.96 9.03 -39.47 -0.36 -2.32 16 5 C -0.07 -0.99 9.30 -39.39 -0.37 -1.36 16 6 C 0.14 2.07 4.83 -83.63 -0.40 1.67 16 7 N -0.59 -8.69 2.93 -120.78 -0.35 -9.05 16 8 C 0.08 0.85 10.10 59.85 0.60 1.45 16 9 C 0.51 9.84 7.55 -10.98 -0.08 9.76 16 10 O -0.52 -12.10 15.54 5.55 0.09 -12.01 16 11 C -0.13 -2.47 4.32 -27.88 -0.12 -2.59 16 12 C 0.04 0.95 4.26 -27.89 -0.12 0.83 16 13 C -0.53 -14.72 9.11 -34.44 -0.31 -15.04 16 14 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -27.20 13.29 55.43 0.74 -26.46 16 17 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 C -0.12 -1.60 9.82 -39.35 -0.39 -1.99 16 22 C 0.08 1.06 7.31 -39.32 -0.29 0.77 16 23 F -0.13 -1.86 17.11 2.25 0.04 -1.82 16 24 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 25 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 27 H 0.14 1.21 6.29 -52.49 -0.33 0.88 16 28 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.58 8.05 -51.93 -0.42 0.16 16 31 H 0.08 0.82 6.48 -51.92 -0.34 0.49 16 32 H 0.08 1.45 7.24 -51.93 -0.38 1.07 16 33 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 323.85 15.07 4.88 4.88 Total: -1.00 -34.73 323.85 -5.79 -40.52 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -4.75 Total: -3.42 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -1.20 Total: -5.20 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.38 Total: -35.51 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.12 Total: -15.86 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.73 -5.79 -40.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291405733.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.236 kcal (2) G-P(sol) polarization free energy of solvation -34.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds