Wall clock time and date at job start Tue Mar 31 2020 05:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35958 * 117.00092 * 2 1 4 4 C 1.38659 * 120.06389 * 0.02562 * 3 2 1 5 5 C 1.38180 * 119.97116 * 179.70300 * 4 3 2 6 6 C 1.38264 * 120.09320 * 0.55569 * 5 4 3 7 7 C 1.50700 * 119.93461 * 179.72610 * 6 5 4 8 8 N 1.46498 * 109.46769 * 269.71993 * 7 6 5 9 9 C 1.34777 * 119.99828 * 179.72341 * 8 7 6 10 10 O 1.21283 * 120.00222 * 0.28168 * 9 8 7 11 11 C 1.50703 * 120.00290 * 180.27728 * 9 8 7 12 12 C 1.52990 * 109.47398 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.47398 * 180.02562 * 12 11 9 14 14 H 1.08001 * 119.99463 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00445 * 180.02562 * 13 12 11 16 16 N 1.31524 * 120.00004 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00395 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46636 * 59.99870 * 17 15 13 19 19 H 1.48498 * 109.47594 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47239 * 300.00311 * 17 15 13 21 21 C 1.38254 * 120.12413 * 359.44221 * 6 5 4 22 22 C 1.38329 * 120.03175 * 0.28101 * 21 6 5 23 23 F 1.35103 * 120.04786 * 179.97438 * 22 21 6 24 24 H 1.09006 * 109.46749 * 299.99662 * 1 2 3 25 25 H 1.08999 * 109.47351 * 59.99837 * 1 2 3 26 26 H 1.09005 * 109.47467 * 180.02562 * 1 2 3 27 27 H 1.08004 * 120.01598 * 359.97438 * 4 3 2 28 28 H 1.08001 * 119.95181 * 180.29622 * 5 4 3 29 29 H 1.09004 * 109.47210 * 149.72350 * 7 6 5 30 30 H 1.08994 * 109.47121 * 29.72320 * 7 6 5 31 31 H 0.97001 * 120.00384 * 0.02562 * 8 7 6 32 32 H 1.08998 * 109.46954 * 300.00581 * 11 9 8 33 33 H 1.09002 * 109.46946 * 59.99717 * 11 9 8 34 34 H 1.08998 * 109.47508 * 300.00200 * 12 11 9 35 35 H 1.09011 * 109.47182 * 60.00188 * 12 11 9 36 36 H 0.96991 * 119.99897 * 179.97438 * 16 15 13 37 37 H 1.08004 * 119.98396 * 180.25156 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3751 0.0005 5 6 1.9216 3.6053 0.0067 6 6 3.3024 3.6777 0.0008 7 6 3.9850 5.0212 0.0014 8 7 4.2060 5.4571 -1.3797 9 6 4.8012 6.6411 -1.6255 10 8 5.1583 7.3434 -0.7034 11 6 5.0230 7.0925 -3.0462 12 6 5.7115 8.4587 -3.0456 13 6 5.9327 8.9103 -4.4663 14 1 5.6144 8.2851 -5.2874 15 6 6.5424 10.1211 -4.7178 16 7 6.9305 10.8822 -3.7179 17 14 6.8172 10.6805 -6.4787 18 1 5.5095 10.7860 -7.1743 19 1 7.4855 12.0067 -6.4783 20 1 7.6746 9.6940 -7.1834 21 6 4.0579 2.5199 0.0003 22 6 3.4333 1.2856 -0.0001 23 9 4.1713 0.1540 -0.0012 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 0.2137 2.3201 0.0005 28 1 1.3341 4.5115 0.0120 29 1 4.9431 4.9418 0.5151 30 1 3.3562 5.7480 0.5156 31 1 3.9201 4.8957 -2.1172 32 1 5.6529 6.3687 -3.5632 33 1 4.0631 7.1691 -3.5571 34 1 5.0819 9.1827 -2.5285 35 1 6.6714 8.3816 -2.5348 36 1 7.3597 11.7338 -3.8948 37 1 5.1363 2.5791 -0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292656430.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:33 Heat of formation + Delta-G solvation = -107.246722 kcal Electronic energy + Delta-G solvation = -20588.449474 eV Core-core repulsion = 17052.264209 eV Total energy + Delta-G solvation = -3536.185265 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.03777 -40.49137 -39.21833 -38.00616 -34.48964 -33.43399 -31.38353 -31.11960 -30.54845 -28.13987 -26.39072 -24.91004 -23.15867 -22.00575 -21.31252 -19.69192 -18.71950 -17.36145 -17.25392 -16.72527 -16.53043 -15.72000 -15.61485 -15.36038 -15.17772 -15.04391 -14.62699 -14.41135 -14.19516 -13.57120 -13.08184 -12.81044 -12.71684 -12.54580 -12.17976 -11.90049 -11.83858 -11.56113 -11.46369 -11.15169 -10.90157 -10.61251 -9.94227 -9.66429 -9.36937 -9.20177 -9.05920 -8.81768 -8.49854 -8.30733 -5.95054 -3.99519 0.74919 0.76553 2.69631 3.04549 3.25042 3.35180 3.39821 3.41477 3.74873 3.86662 4.27067 4.33360 4.48622 4.54894 4.68471 4.76056 4.85403 5.01112 5.11661 5.31235 5.39716 5.41577 5.53471 5.69360 5.74381 5.83326 6.15500 6.22624 6.24261 6.25690 6.66874 6.83498 6.90446 7.75047 7.87345 7.87438 8.08281 8.39647 8.76998 9.08940 9.63923 11.15863 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.033251 B = 0.002594 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.878289 B =10792.112405 C =10900.389588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.311 6.311 3 C 0.098 3.902 4 C -0.183 4.183 5 C -0.069 4.069 6 C -0.109 4.109 7 C 0.163 3.837 8 N -0.742 5.742 9 C 0.510 3.490 10 O -0.534 6.534 11 C -0.130 4.130 12 C 0.037 3.963 13 C -0.528 4.528 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.097 4.097 22 C 0.067 3.933 23 F -0.132 7.132 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.103 0.897 27 H 0.140 0.860 28 H 0.137 0.863 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.398 0.602 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.261 0.739 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.322 -21.928 8.271 27.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.224 6.224 3 C 0.052 3.948 4 C -0.202 4.202 5 C -0.088 4.088 6 C -0.110 4.110 7 C 0.039 3.961 8 N -0.396 5.396 9 C 0.299 3.701 10 O -0.409 6.409 11 C -0.170 4.170 12 C -0.001 4.001 13 C -0.566 4.566 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.529 5.529 17 Si 0.721 3.279 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.116 4.116 22 C 0.048 3.952 23 F -0.111 7.111 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.121 0.879 27 H 0.157 0.843 28 H 0.154 0.846 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.232 0.768 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.071 0.929 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.849 -21.453 9.004 27.075 hybrid contribution -0.154 -0.095 -1.269 1.282 sum -14.003 -21.547 7.735 26.836 Atomic orbital electron populations 1.23139 0.77761 1.04377 1.01642 1.86142 1.21866 1.25806 1.88577 1.19062 0.90847 0.85699 0.99239 1.21149 1.00414 0.91314 1.07327 1.21016 0.93842 0.97546 0.96402 1.19732 0.93487 0.94631 1.03154 1.20057 1.00099 0.90651 0.85256 1.46295 1.63930 1.22121 1.07293 1.21600 0.75666 0.79510 0.93373 1.90676 1.49490 1.53853 1.46891 1.21869 1.02537 1.02533 0.90020 1.18897 0.96038 0.88376 0.96747 1.21189 1.39378 1.03811 0.92222 0.92663 1.25026 0.95661 0.96717 0.96991 1.69988 1.40338 1.11891 1.30643 0.86648 0.78350 0.77851 0.85050 1.20268 1.21294 1.20250 1.21010 1.01382 0.89568 0.99647 1.16931 0.85909 0.83027 1.09380 1.91512 1.76363 1.48893 1.94286 0.92335 0.92259 0.87891 0.84270 0.84554 0.90682 0.90579 0.76783 0.90207 0.90226 0.95820 0.95810 0.92894 0.83601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -2.94 10.36 -19.61 -0.20 -3.14 16 3 C 0.10 0.96 6.69 -39.18 -0.26 0.69 16 4 C -0.18 -1.42 9.04 -39.45 -0.36 -1.78 16 5 C -0.07 -0.57 9.69 -39.59 -0.38 -0.95 16 6 C -0.11 -1.04 5.25 -104.61 -0.55 -1.59 16 7 C 0.16 1.90 5.80 -5.19 -0.03 1.87 16 8 N -0.74 -10.00 5.55 -61.47 -0.34 -10.34 16 9 C 0.51 9.58 7.83 -10.98 -0.09 9.49 16 10 O -0.53 -12.38 15.98 5.55 0.09 -12.29 16 11 C -0.13 -2.60 5.64 -27.89 -0.16 -2.76 16 12 C 0.04 0.99 4.26 -27.89 -0.12 0.87 16 13 C -0.53 -14.97 9.11 -34.44 -0.31 -15.29 16 14 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -27.47 13.29 55.43 0.74 -26.73 16 17 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 21 C -0.10 -0.95 9.67 -39.54 -0.38 -1.33 16 22 C 0.07 0.73 7.31 -39.30 -0.29 0.44 16 23 F -0.13 -1.61 17.11 2.25 0.04 -1.57 16 24 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 25 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 26 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.14 0.73 6.30 -52.48 -0.33 0.40 16 28 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 29 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 30 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 31 H 0.40 4.37 8.46 -40.82 -0.35 4.03 16 32 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 33 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.02 0.70 8.10 -51.92 -0.42 0.28 16 36 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.15 1.30 8.06 -52.48 -0.42 0.88 16 LS Contribution 327.76 15.07 4.94 4.94 Total: -1.00 -35.05 327.76 -6.60 -41.65 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -4.81 Total: -1.55 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -2.03 Total: -7.62 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.40 Total: -37.07 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.11 Total: -15.43 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.05 -6.60 -41.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292656430.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.599 kcal (2) G-P(sol) polarization free energy of solvation -35.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds