Wall clock time and date at job start Tue Mar 31 2020 05:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47447 * 2 1 4 4 O 1.42900 * 109.47334 * 120.00560 * 2 1 3 5 5 C 1.42901 * 113.99717 * 270.00012 * 4 2 1 6 6 C 1.50693 * 109.47334 * 180.02562 * 5 4 2 7 7 C 1.38244 * 119.97163 * 269.72261 * 6 5 4 8 8 C 1.38208 * 120.02458 * 179.72654 * 7 6 5 9 9 C 1.38458 * 119.97457 * 0.56268 * 8 7 6 10 10 F 1.35092 * 120.02551 * 179.68358 * 9 8 7 11 11 C 1.38458 * 119.94587 * 359.71208 * 9 8 7 12 12 C 1.38197 * 119.97896 * 359.97438 * 11 9 8 13 13 C 1.50700 * 109.46791 * 239.99928 * 2 1 3 14 14 O 1.21294 * 120.00310 * 247.99071 * 13 2 1 15 15 N 1.34777 * 120.00330 * 67.98950 * 13 2 1 16 16 C 1.46509 * 119.99623 * 4.92000 * 15 13 2 17 17 C 1.37097 * 120.00615 * 184.92289 * 15 13 2 18 18 H 1.07997 * 119.99559 * 341.95611 * 17 15 13 19 19 C 1.38947 * 120.00054 * 161.95662 * 17 15 13 20 20 N 1.31407 * 120.00210 * 343.82563 * 19 17 15 21 21 Si 1.86803 * 119.99774 * 163.82676 * 19 17 15 22 22 H 1.48502 * 109.47134 * 89.99707 * 21 19 17 23 23 H 1.48497 * 109.47271 * 210.00096 * 21 19 17 24 24 H 1.48506 * 109.46863 * 329.99846 * 21 19 17 25 25 H 1.08999 * 109.46881 * 305.12697 * 1 2 3 26 26 H 1.09002 * 109.47362 * 65.12455 * 1 2 3 27 27 H 1.09001 * 109.47699 * 185.12757 * 1 2 3 28 28 H 1.09006 * 109.46468 * 299.99412 * 5 4 2 29 29 H 1.08990 * 109.47491 * 59.99337 * 5 4 2 30 30 H 1.07998 * 119.98870 * 359.97438 * 7 6 5 31 31 H 1.07995 * 120.01153 * 180.25643 * 8 7 6 32 32 H 1.08002 * 120.01418 * 179.97438 * 11 9 8 33 33 H 1.07997 * 119.98993 * 179.97438 * 12 11 9 34 34 H 1.08999 * 109.46955 * 30.83611 * 16 15 13 35 35 H 1.08999 * 109.46816 * 150.83864 * 16 15 13 36 36 H 1.09001 * 109.46820 * 270.84198 * 16 15 13 37 37 H 0.97004 * 120.00134 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2001 0.1828 2.2940 6 6 2.7015 -0.6283 3.4609 7 6 1.8026 -1.1953 4.3450 8 6 2.2610 -1.9441 5.4123 9 6 3.6216 -2.1166 5.6026 10 9 4.0710 -2.8430 6.6492 11 6 4.5211 -1.5435 4.7198 12 6 4.0602 -0.8005 3.6495 13 6 2.0322 -0.7104 -1.2305 14 8 2.6055 -1.7742 -1.1252 15 7 1.8444 -0.1639 -2.4481 16 6 1.2493 1.1694 -2.5686 17 6 2.2102 -0.8556 -3.5738 18 1 2.8983 -1.6846 -3.4985 19 6 1.6957 -0.4900 -4.8117 20 7 0.6384 0.2873 -4.8802 21 14 2.5071 -1.1036 -6.3785 22 1 1.8923 -2.3938 -6.7817 23 1 2.3146 -0.1041 -7.4598 24 1 3.9595 -1.3006 -6.1393 25 1 -0.3633 0.5913 0.8405 26 1 -0.3634 0.4323 -0.9323 27 1 -0.3634 -1.0235 0.0918 28 1 2.9321 0.9511 2.0449 29 1 1.2540 0.6545 2.5588 30 1 0.7415 -1.0564 4.1992 31 1 1.5585 -2.3904 6.1004 32 1 5.5826 -1.6770 4.8674 33 1 4.7617 -0.3531 2.9610 34 1 1.5165 1.7667 -1.6969 35 1 1.6238 1.6543 -3.4701 36 1 0.1647 1.0790 -2.6284 37 1 0.2795 0.5428 -5.7444 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294635716.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:34 Heat of formation + Delta-G solvation = -87.652498 kcal Electronic energy + Delta-G solvation = -21412.902156 eV Core-core repulsion = 17877.566560 eV Total energy + Delta-G solvation = -3535.335596 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.01578 -39.47772 -38.77229 -36.91302 -34.61805 -32.32962 -31.53044 -31.26405 -30.07221 -26.30250 -25.92150 -24.88590 -23.18687 -22.83358 -21.54314 -19.13668 -17.81244 -16.97506 -16.73399 -16.55818 -15.97486 -15.68057 -15.45366 -14.86326 -14.67130 -14.19288 -14.12927 -13.83547 -13.65464 -13.31918 -12.96706 -12.71273 -12.31380 -12.21798 -11.84431 -11.56276 -11.51252 -11.32675 -11.16284 -11.02162 -10.82155 -10.71441 -10.38117 -10.22947 -9.44158 -9.21709 -9.01626 -8.76878 -8.21781 -7.72659 -6.34733 -3.85038 0.95534 1.12606 3.15947 3.24537 3.28399 3.34234 3.84057 3.96040 4.12900 4.24022 4.56966 4.70950 4.78331 5.03787 5.08485 5.11599 5.14054 5.31912 5.45127 5.45932 5.62279 5.68542 5.79820 5.87006 5.98076 6.03523 6.09679 6.13936 6.27825 6.42534 6.55783 6.75306 6.81622 7.18016 7.41890 7.56573 8.11480 8.48861 9.18579 9.40705 9.97298 10.69683 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.035465 B = 0.003284 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.319629 B = 8524.677475 C = 8979.281718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.079 3.921 3 H 0.070 0.930 4 O -0.349 6.349 5 C 0.098 3.902 6 C -0.091 4.091 7 C -0.069 4.069 8 C -0.158 4.158 9 C 0.097 3.903 10 F -0.143 7.143 11 C -0.157 4.157 12 C -0.066 4.066 13 C 0.448 3.552 14 O -0.570 6.570 15 N -0.446 5.446 16 C 0.109 3.891 17 C -0.305 4.305 18 H 0.101 0.899 19 C 0.029 3.971 20 N -0.882 5.882 21 Si 0.925 3.075 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.269 1.269 25 H 0.054 0.946 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.024 0.976 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.851 4.352 16.056 16.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.017 3.983 3 H 0.088 0.912 4 O -0.268 6.268 5 C 0.021 3.979 6 C -0.091 4.091 7 C -0.088 4.088 8 C -0.177 4.177 9 C 0.078 3.922 10 F -0.121 7.121 11 C -0.175 4.175 12 C -0.084 4.084 13 C 0.235 3.765 14 O -0.453 6.453 15 N -0.166 5.166 16 C -0.034 4.034 17 C -0.433 4.433 18 H 0.119 0.881 19 C -0.173 4.173 20 N -0.522 5.522 21 Si 0.752 3.248 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.194 1.194 25 H 0.073 0.927 26 H 0.099 0.901 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.152 0.848 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.042 0.958 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.079 3.691 15.981 16.437 hybrid contribution 0.164 0.000 -0.679 0.699 sum 1.243 3.691 15.302 15.790 Atomic orbital electron populations 1.22242 0.94522 1.03195 1.02722 1.21941 0.94557 0.95691 0.86074 0.91202 1.88143 1.86680 1.33422 1.18527 1.21342 0.99468 0.91796 0.85311 1.19716 0.93485 0.99996 0.95928 1.20946 1.00122 0.94811 0.92877 1.21109 0.93773 1.02290 1.00515 1.17752 0.92832 0.95008 0.86594 1.91486 1.89918 1.75378 1.55347 1.21131 1.00058 1.00485 0.95871 1.20992 0.95293 0.96324 0.95840 1.19740 0.85941 0.86954 0.83883 1.90536 1.45462 1.23505 1.85813 1.43536 1.54097 1.14690 1.04319 1.21619 0.98658 0.83757 0.99399 1.19685 1.25007 1.15154 0.83463 0.88109 1.25269 0.95224 0.97367 0.99461 1.70029 1.19791 1.36589 1.25803 0.85948 0.79866 0.78379 0.80629 1.20322 1.20831 1.19412 0.92678 0.90138 0.91526 0.92431 0.92429 0.84795 0.84702 0.84642 0.84675 0.95797 0.90406 0.92572 0.92253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 9.40 37.16 0.35 -2.44 16 2 C 0.08 1.49 2.36 -27.88 -0.07 1.42 16 3 H 0.07 1.14 6.47 -51.93 -0.34 0.81 16 4 O -0.35 -6.56 9.52 -55.01 -0.52 -7.08 16 5 C 0.10 1.31 5.87 36.00 0.21 1.52 16 6 C -0.09 -1.16 5.51 -104.62 -0.58 -1.74 16 7 C -0.07 -0.79 9.70 -39.59 -0.38 -1.18 16 8 C -0.16 -1.73 10.03 -39.51 -0.40 -2.13 16 9 C 0.10 1.16 7.30 -39.42 -0.29 0.87 16 10 F -0.14 -1.73 17.27 2.25 0.04 -1.69 16 11 C -0.16 -1.79 10.03 -39.52 -0.40 -2.19 16 12 C -0.07 -0.81 9.70 -39.59 -0.38 -1.19 16 13 C 0.45 11.22 6.99 -10.99 -0.08 11.14 16 14 O -0.57 -16.70 16.16 -14.24 -0.23 -16.93 16 15 N -0.45 -11.40 3.02 -122.19 -0.37 -11.77 16 16 C 0.11 2.36 7.44 59.85 0.45 2.81 16 17 C -0.31 -8.55 9.37 -14.93 -0.14 -8.69 16 18 H 0.10 2.98 7.33 -52.49 -0.38 2.60 16 19 C 0.03 0.77 5.02 -17.47 -0.09 0.69 16 20 N -0.88 -23.04 10.64 55.50 0.59 -22.45 16 21 Si 0.93 20.63 29.58 -169.99 -5.03 15.60 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 25 H 0.05 0.71 7.99 -51.93 -0.42 0.29 16 26 H 0.08 1.37 5.65 -51.93 -0.29 1.08 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.06 0.69 8.03 -51.93 -0.42 0.27 16 29 H 0.06 0.64 7.93 -51.93 -0.41 0.22 16 30 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.02 0.42 6.30 -51.93 -0.33 0.09 16 35 H 0.08 1.79 6.67 -51.93 -0.35 1.44 16 36 H 0.06 1.22 6.56 -51.93 -0.34 0.88 16 37 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 LS Contribution 317.82 15.07 4.79 4.79 Total: -1.00 -32.51 317.82 -7.04 -39.55 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -4.52 Total: 1.10 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -1.79 Total: -1.11 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: 0.22 Total: -34.22 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.75 Total: -24.02 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.51 -7.04 -39.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294635716.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.098 kcal (2) G-P(sol) polarization free energy of solvation -32.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds