Wall clock time and date at job start Tue Mar 31 2020 05:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46742 * 2 1 4 4 C 1.36936 * 119.99728 * 263.18791 * 3 2 1 5 5 H 1.08001 * 120.00005 * 199.05723 * 4 3 2 6 6 C 1.38806 * 120.00086 * 19.05941 * 4 3 2 7 7 N 1.31622 * 120.00154 * 25.88034 * 6 4 3 8 8 Si 1.86801 * 120.00007 * 205.88156 * 6 4 3 9 9 H 1.48500 * 109.47401 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47397 * 119.99943 * 8 6 4 11 11 H 1.48503 * 109.47163 * 239.99599 * 8 6 4 12 12 C 1.46497 * 119.99917 * 83.19455 * 3 2 1 13 13 H 1.08999 * 109.47437 * 6.50495 * 12 3 2 14 14 C 1.50699 * 109.47322 * 126.50972 * 12 3 2 15 15 O 1.20826 * 119.99764 * 15.84519 * 14 12 3 16 16 O 1.34229 * 120.00045 * 195.57723 * 14 12 3 17 17 C 1.45198 * 117.00181 * 180.26980 * 16 14 12 18 18 C 1.50706 * 109.46745 * 246.50583 * 12 3 2 19 19 C 1.38247 * 119.97268 * 312.82873 * 18 12 3 20 20 C 1.38200 * 120.02079 * 179.77164 * 19 18 12 21 21 C 1.38458 * 119.97674 * 0.50499 * 20 19 18 22 22 F 1.35098 * 120.02412 * 179.77437 * 21 20 19 23 23 C 1.38459 * 119.94703 * 359.74619 * 21 20 19 24 24 C 1.38198 * 119.97690 * 0.02562 * 23 21 20 25 25 H 1.08997 * 109.47092 * 173.08390 * 1 2 3 26 26 H 1.09007 * 109.46745 * 293.07709 * 1 2 3 27 27 H 1.08990 * 109.47341 * 53.08252 * 1 2 3 28 28 H 1.09001 * 109.46962 * 239.99720 * 2 1 3 29 29 H 1.09002 * 109.47251 * 119.99546 * 2 1 3 30 30 H 0.96998 * 119.99920 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.47485 * 300.00295 * 17 16 14 32 32 H 1.09006 * 109.46784 * 60.00207 * 17 16 14 33 33 H 1.08997 * 109.47411 * 179.97438 * 17 16 14 34 34 H 1.08001 * 119.98620 * 0.02562 * 19 18 12 35 35 H 1.08002 * 120.00742 * 180.25711 * 20 19 18 36 36 H 1.07998 * 120.01225 * 179.97438 * 23 21 20 37 37 H 1.07998 * 119.98803 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3791 1.9799 -1.1776 5 1 3.0130 2.8542 -1.1668 6 6 1.9301 1.4630 -2.3850 7 7 0.8111 0.7712 -2.4293 8 14 2.9138 1.7491 -3.9470 9 1 4.1228 2.5512 -3.6308 10 1 3.3226 0.4419 -4.5210 11 1 2.0776 2.4820 -4.9314 12 6 2.1207 2.1220 1.2598 13 1 1.9033 1.4536 2.0930 14 6 3.5160 2.6716 1.4074 15 8 4.2503 2.7211 0.4492 16 8 3.9413 3.1111 2.6023 17 6 5.2947 3.6328 2.6693 18 6 1.1309 3.2585 1.2560 19 6 1.0333 4.0857 0.1527 20 6 0.1227 5.1253 0.1463 21 6 -0.6845 5.3446 1.2496 22 9 -1.5718 6.3634 1.2462 23 6 -0.5822 4.5186 2.3561 24 6 0.3258 3.4768 2.3584 25 1 -0.3633 -1.0202 -0.1237 26 1 -0.3633 0.4028 0.9455 27 1 -0.3633 0.6172 -0.8215 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 0.4976 0.4097 -3.2730 31 1 5.9991 2.8545 2.3759 32 1 5.3902 4.4828 1.9936 33 1 5.5105 3.9533 3.6885 34 1 1.6660 3.9169 -0.7062 35 1 0.0438 5.7688 -0.7174 36 1 -1.2110 4.6890 3.2174 37 1 0.4055 2.8321 3.2212 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297700901.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:09 Heat of formation + Delta-G solvation = -64.651392 kcal Electronic energy + Delta-G solvation = -23001.892534 eV Core-core repulsion = 19467.554341 eV Total energy + Delta-G solvation = -3534.338193 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.47328 -40.02075 -38.43340 -36.39261 -35.26275 -32.21333 -30.73287 -30.57209 -28.67233 -27.80534 -25.97177 -23.50714 -22.46532 -21.67975 -21.08637 -19.71219 -17.48342 -17.24124 -16.63816 -16.11817 -15.73823 -15.45486 -15.22878 -15.14647 -14.35636 -13.65969 -13.59878 -13.51452 -13.01462 -12.84827 -12.64385 -12.44651 -12.09767 -11.94595 -11.66379 -11.50451 -11.47032 -10.86843 -10.83044 -10.58254 -10.41907 -10.27101 -10.14194 -9.97182 -9.44712 -9.24123 -8.61830 -8.49301 -7.99348 -7.05270 -5.88065 -3.24710 1.62646 1.82458 2.99075 3.23012 3.36901 3.44206 3.50932 4.13411 4.44467 4.73623 5.11581 5.21345 5.33407 5.36171 5.38046 5.41917 5.47087 5.61496 5.77476 5.82574 5.91230 6.05651 6.36972 6.44963 6.54552 6.62557 6.76442 6.93466 6.93947 6.97179 6.98693 7.20214 7.43040 7.48030 7.71756 8.12880 8.19559 8.57517 9.09912 9.63067 10.08734 11.10417 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012421 B = 0.008215 C = 0.006530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.766631 B = 3407.621334 C = 4287.149941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.173 3.827 3 N -0.561 5.561 4 C -0.249 4.249 5 H 0.092 0.908 6 C 0.007 3.993 7 N -0.881 5.881 8 Si 0.896 3.104 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.291 1.291 12 C 0.225 3.775 13 H 0.096 0.904 14 C 0.438 3.562 15 O -0.479 6.479 16 O -0.372 6.372 17 C 0.036 3.964 18 C -0.092 4.092 19 C -0.057 4.057 20 C -0.160 4.160 21 C 0.081 3.919 22 F -0.152 7.152 23 C -0.167 4.167 24 C -0.083 4.083 25 H 0.022 0.978 26 H 0.011 0.989 27 H 0.112 0.888 28 H 0.072 0.928 29 H 0.012 0.988 30 H 0.254 0.746 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.161 0.839 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.031 4.049 9.825 10.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.049 3.951 3 N -0.279 5.279 4 C -0.377 4.377 5 H 0.110 0.890 6 C -0.193 4.193 7 N -0.524 5.524 8 Si 0.725 3.275 9 H -0.199 1.199 10 H -0.215 1.215 11 H -0.219 1.219 12 C 0.113 3.887 13 H 0.114 0.886 14 C 0.276 3.724 15 O -0.363 6.363 16 O -0.289 6.289 17 C -0.059 4.059 18 C -0.095 4.095 19 C -0.075 4.075 20 C -0.179 4.179 21 C 0.062 3.938 22 F -0.131 7.131 23 C -0.186 4.186 24 C -0.102 4.102 25 H 0.041 0.959 26 H 0.030 0.970 27 H 0.130 0.870 28 H 0.091 0.909 29 H 0.030 0.970 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.109 0.891 34 H 0.179 0.821 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.196 3.959 9.329 10.204 hybrid contribution 0.355 0.261 -0.949 1.046 sum 1.551 4.220 8.379 9.509 Atomic orbital electron populations 1.22514 0.98004 1.00051 1.01442 1.20664 0.93410 0.83019 0.98029 1.44258 1.73338 1.09757 1.00518 1.19505 1.22802 1.12995 0.82365 0.89012 1.24908 0.95952 1.00567 0.97835 1.70083 1.17830 1.39230 1.25240 0.86327 0.80408 0.77655 0.83133 1.19930 1.21497 1.21856 1.18518 0.85793 0.91629 0.92772 0.88594 1.25881 0.91579 0.74757 0.80182 1.90644 1.56495 1.50102 1.39023 1.86588 1.32176 1.73493 1.36653 1.23068 0.81711 0.98802 1.02322 1.20242 0.99079 0.96042 0.94110 1.21747 0.96751 0.90484 0.98524 1.21174 0.98157 1.00937 0.97611 1.17746 0.91557 0.87911 0.96597 1.91430 1.66743 1.57835 1.97057 1.20869 1.02172 0.97558 0.97999 1.20801 0.94969 0.96693 0.97696 0.95886 0.97010 0.86953 0.90936 0.97008 0.93569 0.92574 0.92579 0.89122 0.82149 0.85565 0.85651 0.85590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 9.63 37.16 0.36 -3.12 16 2 C 0.17 3.84 5.55 -4.04 -0.02 3.82 16 3 N -0.56 -12.82 2.39 -168.30 -0.40 -13.22 16 4 C -0.25 -6.26 5.86 -15.06 -0.09 -6.34 16 5 H 0.09 2.41 5.02 -52.49 -0.26 2.15 16 6 C 0.01 0.17 4.72 -17.43 -0.08 0.09 16 7 N -0.88 -23.04 8.80 55.49 0.49 -22.55 16 8 Si 0.90 21.12 29.63 -169.99 -5.04 16.09 16 9 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 12 C 0.23 4.42 2.98 -70.23 -0.21 4.21 16 13 H 0.10 1.67 7.64 -51.93 -0.40 1.27 16 14 C 0.44 8.67 7.04 36.01 0.25 8.93 16 15 O -0.48 -10.94 13.51 -18.75 -0.25 -11.20 16 16 O -0.37 -6.27 10.56 -39.25 -0.41 -6.68 16 17 C 0.04 0.47 10.56 101.05 1.07 1.54 16 18 C -0.09 -1.72 4.93 -104.61 -0.52 -2.24 16 19 C -0.06 -1.13 8.89 -39.59 -0.35 -1.49 16 20 C -0.16 -2.89 10.03 -39.51 -0.40 -3.29 16 21 C 0.08 1.39 7.30 -39.42 -0.29 1.10 16 22 F -0.15 -2.54 17.27 2.25 0.04 -2.50 16 23 C -0.17 -2.60 10.03 -39.51 -0.40 -3.00 16 24 C -0.08 -1.33 9.67 -39.59 -0.38 -1.71 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.11 2.81 5.68 -51.93 -0.30 2.51 16 28 H 0.07 1.79 6.63 -51.93 -0.34 1.44 16 29 H 0.01 0.23 8.02 -51.93 -0.42 -0.18 16 30 H 0.25 6.54 8.31 -40.82 -0.34 6.20 16 31 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 32 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.16 3.58 4.73 -52.49 -0.25 3.33 16 35 H 0.13 2.08 8.06 -52.49 -0.42 1.66 16 36 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 37 H 0.13 1.67 7.99 -52.49 -0.42 1.25 16 LS Contribution 311.48 15.07 4.69 4.69 Total: -1.00 -27.88 311.48 -6.42 -34.30 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -4.48 Total: 2.58 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -1.06 Total: -1.51 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.09 Total: -35.77 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.67 Total: -17.88 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.04 Total: -2.50 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.04 Total: 16.09 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.88 -6.42 -34.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297700901.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.353 kcal (2) G-P(sol) polarization free energy of solvation -27.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds