Wall clock time and date at job start Tue Mar 31 2020 05:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47177 * 2 1 4 4 C 1.36938 * 120.00077 * 272.19564 * 3 2 1 5 5 H 1.07996 * 120.00050 * 182.30466 * 4 3 2 6 6 C 1.38813 * 120.00035 * 2.29855 * 4 3 2 7 7 N 1.31620 * 119.99996 * 20.22960 * 6 4 3 8 8 Si 1.86794 * 120.00174 * 200.22535 * 6 4 3 9 9 H 1.48501 * 109.46732 * 90.00334 * 8 6 4 10 10 H 1.48499 * 109.47630 * 209.99966 * 8 6 4 11 11 H 1.48497 * 109.47366 * 330.00645 * 8 6 4 12 12 C 1.46498 * 119.99785 * 92.18743 * 3 2 1 13 13 H 1.08996 * 109.47391 * 7.89639 * 12 3 2 14 14 C 1.50706 * 109.46695 * 127.89034 * 12 3 2 15 15 O 1.20825 * 120.00153 * 16.93064 * 14 12 3 16 16 O 1.34230 * 120.00159 * 196.92683 * 14 12 3 17 17 C 1.45197 * 117.00396 * 179.97438 * 16 14 12 18 18 C 1.50699 * 109.47427 * 247.88966 * 12 3 2 19 19 C 1.38217 * 120.01107 * 342.38323 * 18 12 3 20 20 C 1.38233 * 120.02363 * 180.02562 * 19 18 12 21 21 C 1.38267 * 120.05212 * 359.97438 * 20 19 18 22 22 C 1.38180 * 120.02203 * 0.02562 * 21 20 19 23 23 C 1.38440 * 120.01055 * 162.40637 * 18 12 3 24 24 F 1.35088 * 120.02909 * 359.97438 * 23 18 12 25 25 H 1.09001 * 109.47006 * 172.13979 * 1 2 3 26 26 H 1.09002 * 109.47089 * 292.13905 * 1 2 3 27 27 H 1.08994 * 109.47626 * 52.14242 * 1 2 3 28 28 H 1.09000 * 109.47148 * 239.99813 * 2 1 3 29 29 H 1.09000 * 109.46927 * 119.99959 * 2 1 3 30 30 H 0.96995 * 120.00563 * 179.97438 * 7 6 4 31 31 H 1.08993 * 109.47042 * 180.02562 * 17 16 14 32 32 H 1.08993 * 109.47178 * 300.00873 * 17 16 14 33 33 H 1.09000 * 109.46481 * 60.00181 * 17 16 14 34 34 H 1.08004 * 119.99069 * 0.04415 * 19 18 12 35 35 H 1.08000 * 119.97016 * 180.02562 * 20 19 18 36 36 H 1.07996 * 119.98411 * 179.71763 * 21 20 19 37 37 H 1.07997 * 120.00971 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2038 2.0419 -1.1850 5 1 2.5990 3.0469 -1.1868 6 6 1.8839 1.4197 -2.3840 7 7 1.0565 0.3961 -2.3940 8 14 2.6274 2.0352 -3.9832 9 1 3.9049 1.3234 -4.2412 10 1 1.6830 1.7776 -5.0998 11 1 2.8858 3.4939 -3.8799 12 6 2.3082 2.0556 1.2678 13 1 2.2375 1.3383 2.0854 14 6 3.7002 2.6314 1.2237 15 8 4.2638 2.7688 0.1638 16 8 4.3139 2.9916 2.3618 17 6 5.6539 3.5382 2.2438 18 6 1.3122 3.1654 1.4857 19 6 0.5687 3.6453 0.4240 20 6 -0.3446 4.6636 0.6234 21 6 -0.5158 5.2029 1.8850 22 6 0.2265 4.7247 2.9479 23 6 1.1421 3.7049 2.7492 24 9 1.8682 3.2366 3.7876 25 1 -0.3633 -1.0180 -0.1405 26 1 -0.3633 0.3873 0.9519 27 1 -0.3634 0.6306 -0.8113 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.8326 -0.0384 -3.2318 31 1 6.0334 3.7869 3.2348 32 1 6.3077 2.8002 1.7793 33 1 5.6264 4.4376 1.6286 34 1 0.7010 3.2243 -0.5618 35 1 -0.9254 5.0376 -0.2067 36 1 -1.2263 6.0016 2.0387 37 1 0.0929 5.1464 3.9331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297733666.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:15 Heat of formation + Delta-G solvation = -55.262841 kcal Electronic energy + Delta-G solvation = -23418.498337 eV Core-core repulsion = 19884.567262 eV Total energy + Delta-G solvation = -3533.931075 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.37442 -39.91603 -38.44018 -36.45843 -35.26782 -32.44006 -30.62083 -30.00626 -28.86288 -27.82091 -26.07498 -23.57611 -22.24804 -21.80805 -20.82691 -19.67371 -17.42080 -17.24203 -16.55861 -15.99827 -15.72150 -15.52735 -15.17792 -14.96123 -14.53189 -13.76003 -13.45786 -13.32955 -13.22640 -12.77603 -12.58236 -12.19975 -12.01265 -11.84560 -11.62851 -11.46730 -11.21905 -10.90361 -10.75839 -10.62423 -10.38343 -10.22018 -10.02764 -9.96606 -9.56453 -9.30203 -8.42544 -8.31259 -8.13348 -7.14970 -5.81983 -3.15956 1.58955 1.76452 3.03318 3.28790 3.43048 3.47407 3.50939 4.14711 4.43664 4.74007 5.07780 5.17140 5.28066 5.36193 5.46331 5.52244 5.56382 5.63791 5.72835 5.84267 5.90895 6.03604 6.38870 6.46393 6.54328 6.61806 6.90718 6.99076 7.03239 7.07013 7.10895 7.16464 7.50503 7.67057 7.76588 8.07915 8.22637 8.60746 9.14614 9.68120 10.09138 11.17150 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015016 B = 0.008339 C = 0.006979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.195721 B = 3357.050390 C = 4011.354551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.163 3.837 3 N -0.571 5.571 4 C -0.234 4.234 5 H 0.088 0.912 6 C -0.001 4.001 7 N -0.896 5.896 8 Si 0.904 3.096 9 H -0.289 1.289 10 H -0.294 1.294 11 H -0.280 1.280 12 C 0.230 3.770 13 H 0.098 0.902 14 C 0.438 3.562 15 O -0.475 6.475 16 O -0.367 6.367 17 C 0.036 3.964 18 C -0.128 4.128 19 C -0.058 4.058 20 C -0.146 4.146 21 C -0.100 4.100 22 C -0.174 4.174 23 C 0.101 3.899 24 F -0.137 7.137 25 H 0.025 0.975 26 H 0.005 0.995 27 H 0.088 0.912 28 H 0.101 0.899 29 H 0.005 0.995 30 H 0.253 0.747 31 H 0.090 0.910 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.181 0.819 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.373 5.727 9.224 10.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.039 3.961 3 N -0.291 5.291 4 C -0.362 4.362 5 H 0.105 0.895 6 C -0.198 4.198 7 N -0.542 5.542 8 Si 0.734 3.266 9 H -0.216 1.216 10 H -0.221 1.221 11 H -0.205 1.205 12 C 0.117 3.883 13 H 0.116 0.884 14 C 0.276 3.724 15 O -0.358 6.358 16 O -0.284 6.284 17 C -0.059 4.059 18 C -0.132 4.132 19 C -0.075 4.075 20 C -0.164 4.164 21 C -0.118 4.118 22 C -0.193 4.193 23 C 0.081 3.919 24 F -0.116 7.116 25 H 0.044 0.956 26 H 0.024 0.976 27 H 0.106 0.894 28 H 0.119 0.881 29 H 0.024 0.976 30 H 0.064 0.936 31 H 0.109 0.891 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.197 0.803 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.188 5.617 8.730 10.383 hybrid contribution 0.724 0.332 -0.622 1.011 sum 0.537 5.950 8.108 10.071 Atomic orbital electron populations 1.22181 0.98256 0.99670 0.99261 1.21153 0.93164 0.82823 0.98929 1.44243 1.73867 1.11614 0.99363 1.19353 1.34844 0.99384 0.82576 0.89471 1.24773 0.98811 0.98428 0.97771 1.70237 1.33519 1.25100 1.25343 0.86245 0.78949 0.78445 0.82936 1.21576 1.22056 1.20547 1.18415 0.85508 0.92077 0.92288 0.88393 1.25594 0.89842 0.75209 0.81750 1.90663 1.65804 1.48559 1.30791 1.86647 1.30143 1.74282 1.37342 1.23059 0.81935 0.98475 1.02413 1.20609 1.01214 0.99384 0.91944 1.22287 0.90851 0.92313 1.02079 1.21314 0.99893 0.98331 0.96874 1.20935 0.98746 0.99486 0.92623 1.20919 0.99178 0.98983 1.00245 1.17683 0.93723 0.96236 0.84235 1.91472 1.75965 1.87524 1.56590 0.95569 0.97594 0.89356 0.88099 0.97643 0.93634 0.89132 0.92590 0.92703 0.80265 0.85953 0.86073 0.85673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 9.42 37.16 0.35 -2.61 16 2 C 0.16 3.76 5.67 -4.04 -0.02 3.73 16 3 N -0.57 -13.49 2.14 -168.31 -0.36 -13.85 16 4 C -0.23 -5.98 5.03 -15.06 -0.08 -6.06 16 5 H 0.09 2.34 6.23 -52.49 -0.33 2.01 16 6 C 0.00 -0.03 5.13 -17.43 -0.09 -0.12 16 7 N -0.90 -23.37 7.95 55.49 0.44 -22.93 16 8 Si 0.90 21.61 29.60 -169.99 -5.03 16.58 16 9 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 C 0.23 4.87 2.62 -70.23 -0.18 4.68 16 13 H 0.10 1.95 7.60 -51.93 -0.39 1.56 16 14 C 0.44 9.39 7.10 36.01 0.26 9.65 16 15 O -0.47 -11.54 13.67 -18.75 -0.26 -11.80 16 16 O -0.37 -6.83 9.87 -39.26 -0.39 -7.22 16 17 C 0.04 0.52 10.56 101.05 1.07 1.59 16 18 C -0.13 -2.52 5.10 -104.56 -0.53 -3.05 16 19 C -0.06 -1.14 8.84 -39.59 -0.35 -1.49 16 20 C -0.15 -2.38 10.04 -39.57 -0.40 -2.78 16 21 C -0.10 -1.43 10.04 -39.59 -0.40 -1.83 16 22 C -0.17 -2.64 10.03 -39.51 -0.40 -3.03 16 23 C 0.10 1.79 7.21 -39.42 -0.28 1.51 16 24 F -0.14 -2.41 16.01 2.25 0.04 -2.37 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 27 H 0.09 2.17 6.48 -51.93 -0.34 1.83 16 28 H 0.10 2.59 5.82 -51.93 -0.30 2.29 16 29 H 0.01 0.11 7.82 -51.93 -0.41 -0.29 16 30 H 0.25 6.53 8.31 -40.82 -0.34 6.19 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 33 H 0.05 0.80 8.13 -51.93 -0.42 0.38 16 34 H 0.18 4.06 4.64 -52.48 -0.24 3.81 16 35 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 309.11 15.07 4.66 4.66 Total: -1.00 -27.96 309.11 -6.48 -34.45 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -4.53 Total: 2.28 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -1.06 Total: 0.19 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.08 Total: -36.78 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.64 Total: -19.02 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.96 -6.48 -34.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297733666.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.814 kcal (2) G-P(sol) polarization free energy of solvation -27.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds