Wall clock time and date at job start Tue Mar 31 2020 05:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47207 * 2 1 4 4 C 1.36937 * 119.99675 * 97.25940 * 3 2 1 5 5 H 1.08004 * 119.99807 * 161.21701 * 4 3 2 6 6 C 1.38817 * 120.00244 * 341.21740 * 4 3 2 7 7 N 1.31621 * 119.99639 * 353.14716 * 6 4 3 8 8 Si 1.86797 * 120.00058 * 173.15109 * 6 4 3 9 9 H 1.48495 * 109.47454 * 59.99970 * 8 6 4 10 10 H 1.48503 * 109.47222 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47154 * 299.99627 * 8 6 4 12 12 C 1.46494 * 120.00436 * 277.26463 * 3 2 1 13 13 H 1.09001 * 109.46968 * 351.84002 * 12 3 2 14 14 C 1.50702 * 109.47048 * 231.84430 * 12 3 2 15 15 O 1.20822 * 119.99879 * 359.97438 * 14 12 3 16 16 O 1.34227 * 120.00217 * 179.97438 * 14 12 3 17 17 C 1.45194 * 117.00114 * 179.97438 * 16 14 12 18 18 C 1.50696 * 109.47637 * 111.84130 * 12 3 2 19 19 C 1.38216 * 120.01049 * 22.31429 * 18 12 3 20 20 C 1.38225 * 120.02486 * 179.97438 * 19 18 12 21 21 C 1.38266 * 120.05425 * 359.97438 * 20 19 18 22 22 C 1.38180 * 120.02222 * 0.27779 * 21 20 19 23 23 C 1.38441 * 120.01387 * 202.29533 * 18 12 3 24 24 F 1.35101 * 120.02552 * 0.03905 * 23 18 12 25 25 H 1.09004 * 109.47092 * 307.43384 * 1 2 3 26 26 H 1.08997 * 109.47106 * 67.43699 * 1 2 3 27 27 H 1.09003 * 109.46956 * 187.43510 * 1 2 3 28 28 H 1.09008 * 109.46951 * 240.00239 * 2 1 3 29 29 H 1.09003 * 109.47528 * 120.00433 * 2 1 3 30 30 H 0.96999 * 119.99710 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.47149 * 60.00853 * 17 16 14 32 32 H 1.09008 * 109.47148 * 180.02562 * 17 16 14 33 33 H 1.08997 * 109.47415 * 299.99664 * 17 16 14 34 34 H 1.08000 * 119.99071 * 0.02562 * 19 18 12 35 35 H 1.08001 * 119.97512 * 179.97438 * 20 19 18 36 36 H 1.07998 * 119.98980 * 180.02562 * 21 20 19 37 37 H 1.07992 * 120.01458 * 179.72813 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3879 1.9767 1.1764 5 1 3.0181 2.8537 1.1631 6 6 1.9524 1.4533 2.3861 7 7 1.0779 0.4697 2.4009 8 14 2.6073 2.1449 3.9930 9 1 2.2704 3.5883 4.0846 10 1 1.9908 1.4189 5.1323 11 1 4.0821 1.9770 4.0396 12 6 2.1113 2.1254 -1.2584 13 1 1.9165 1.4526 -2.0936 14 6 3.4938 2.7093 -1.3958 15 8 4.3168 2.5233 -0.5310 16 8 3.8109 3.4359 -2.4789 17 6 5.1604 3.9677 -2.5439 18 6 1.0940 3.2371 -1.2611 19 6 0.5934 3.7189 -0.0663 20 6 -0.3394 4.7390 -0.0684 21 6 -0.7724 5.2789 -1.2653 22 6 -0.2773 4.7952 -2.4613 23 6 0.6606 3.7763 -2.4603 24 9 1.1489 3.3058 -3.6288 25 1 -0.3633 0.6247 0.8160 26 1 -0.3633 0.3943 -0.9490 27 1 -0.3633 -1.0191 0.1330 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 0.7739 0.1037 3.2461 31 1 5.8761 3.1459 -2.5230 32 1 5.2838 4.5338 -3.4673 33 1 5.3343 4.6230 -1.6905 34 1 0.9318 3.2989 0.8694 35 1 -0.7303 5.1146 0.8657 36 1 -1.5010 6.0761 -1.2657 37 1 -0.6189 5.2140 -3.3962 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297733668.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:17 Heat of formation + Delta-G solvation = -59.515060 kcal Electronic energy + Delta-G solvation = -23466.532193 eV Core-core repulsion = 19932.416728 eV Total energy + Delta-G solvation = -3534.115465 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.33405 -39.92018 -38.38827 -36.44199 -35.27139 -32.38618 -30.70018 -29.93004 -28.84353 -27.79964 -26.08109 -23.56176 -22.17640 -21.75621 -20.84745 -19.67085 -17.41172 -17.21735 -16.56746 -16.00785 -15.67242 -15.47709 -15.23284 -14.91719 -14.52334 -13.74211 -13.47793 -13.29083 -13.20652 -12.76097 -12.55400 -12.17664 -12.03347 -11.81405 -11.56218 -11.47604 -11.21158 -10.92273 -10.71386 -10.65427 -10.40420 -10.24946 -10.06786 -9.93997 -9.54729 -9.45811 -8.44886 -8.29504 -8.08247 -7.01914 -5.81845 -3.28896 1.65898 1.83235 3.01372 3.28555 3.39185 3.40549 3.44778 4.19408 4.40623 4.79205 5.10535 5.21535 5.33745 5.35514 5.45350 5.50948 5.57485 5.66480 5.76652 5.87485 5.92211 6.08575 6.44133 6.51017 6.60149 6.67489 6.88528 6.99906 7.02515 7.07262 7.12705 7.23113 7.57153 7.66988 7.74145 8.04387 8.27270 8.58513 9.13207 9.64541 10.10149 11.16470 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014818 B = 0.008453 C = 0.007233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.114010 B = 3311.673252 C = 3870.215264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.166 3.834 3 N -0.566 5.566 4 C -0.237 4.237 5 H 0.081 0.919 6 C -0.001 4.001 7 N -0.899 5.899 8 Si 0.909 3.091 9 H -0.282 1.282 10 H -0.290 1.290 11 H -0.283 1.283 12 C 0.228 3.772 13 H 0.100 0.900 14 C 0.439 3.561 15 O -0.479 6.479 16 O -0.366 6.366 17 C 0.036 3.964 18 C -0.124 4.124 19 C -0.060 4.060 20 C -0.147 4.147 21 C -0.101 4.101 22 C -0.175 4.175 23 C 0.104 3.896 24 F -0.140 7.140 25 H 0.087 0.913 26 H 0.006 0.994 27 H 0.025 0.975 28 H 0.001 0.999 29 H 0.103 0.897 30 H 0.255 0.745 31 H 0.055 0.945 32 H 0.090 0.910 33 H 0.055 0.945 34 H 0.181 0.819 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.203 6.387 -8.192 10.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.043 3.957 3 N -0.285 5.285 4 C -0.366 4.366 5 H 0.098 0.902 6 C -0.198 4.198 7 N -0.544 5.544 8 Si 0.738 3.262 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.209 1.209 12 C 0.115 3.885 13 H 0.118 0.882 14 C 0.278 3.722 15 O -0.362 6.362 16 O -0.283 6.283 17 C -0.059 4.059 18 C -0.127 4.127 19 C -0.077 4.077 20 C -0.165 4.165 21 C -0.119 4.119 22 C -0.194 4.194 23 C 0.084 3.916 24 F -0.118 7.118 25 H 0.106 0.894 26 H 0.025 0.975 27 H 0.044 0.956 28 H 0.019 0.981 29 H 0.121 0.879 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.198 0.802 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.953 6.169 -7.767 9.965 hybrid contribution 0.558 0.361 0.568 0.874 sum -0.395 6.530 -7.199 9.727 Atomic orbital electron populations 1.22229 0.98492 0.99593 0.99442 1.20970 0.92832 0.83029 0.98915 1.44074 1.73674 1.10472 1.00317 1.19293 1.23196 1.11185 0.82904 0.90177 1.24961 0.97862 0.99028 0.97940 1.70114 1.31974 1.27445 1.24875 0.86253 0.78776 0.78367 0.82756 1.20836 1.21537 1.20923 1.18445 0.85703 0.91357 0.92969 0.88239 1.25536 0.92185 0.75600 0.78866 1.90645 1.50487 1.55205 1.39897 1.86631 1.32844 1.63900 1.44894 1.23067 0.82012 0.98537 1.02253 1.20550 1.01067 0.99034 0.92068 1.22365 0.92325 0.92072 1.00970 1.21299 0.99131 0.98371 0.97685 1.20914 0.99437 0.99544 0.92024 1.20891 1.00188 0.99055 0.99238 1.17653 0.96762 0.96166 0.80998 1.91453 1.86741 1.87492 1.46143 0.89444 0.97517 0.95554 0.98072 0.87939 0.93467 0.92611 0.89109 0.92617 0.80226 0.86127 0.86190 0.85777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.50 37.16 0.35 -2.70 16 2 C 0.17 3.87 5.54 -4.04 -0.02 3.85 16 3 N -0.57 -13.47 2.12 -168.31 -0.36 -13.83 16 4 C -0.24 -6.06 5.11 -15.06 -0.08 -6.14 16 5 H 0.08 2.15 6.30 -52.48 -0.33 1.82 16 6 C 0.00 -0.01 5.12 -17.43 -0.09 -0.10 16 7 N -0.90 -23.27 8.06 55.49 0.45 -22.83 16 8 Si 0.91 21.07 29.56 -169.99 -5.02 16.05 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 C 0.23 4.86 2.67 -70.24 -0.19 4.68 16 13 H 0.10 2.02 7.59 -51.93 -0.39 1.62 16 14 C 0.44 9.43 7.02 36.01 0.25 9.68 16 15 O -0.48 -11.57 13.91 -18.75 -0.26 -11.83 16 16 O -0.37 -6.81 9.90 -39.25 -0.39 -7.20 16 17 C 0.04 0.52 10.56 101.05 1.07 1.59 16 18 C -0.12 -2.47 5.02 -104.56 -0.52 -3.00 16 19 C -0.06 -1.21 9.06 -39.59 -0.36 -1.57 16 20 C -0.15 -2.47 10.04 -39.58 -0.40 -2.87 16 21 C -0.10 -1.49 10.04 -39.59 -0.40 -1.89 16 22 C -0.17 -2.71 10.03 -39.51 -0.40 -3.10 16 23 C 0.10 1.88 7.05 -39.42 -0.28 1.60 16 24 F -0.14 -2.49 16.21 2.25 0.04 -2.45 16 25 H 0.09 2.15 6.46 -51.93 -0.34 1.81 16 26 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.00 0.02 8.02 -51.92 -0.42 -0.39 16 29 H 0.10 2.65 5.93 -51.93 -0.31 2.34 16 30 H 0.25 6.53 8.31 -40.82 -0.34 6.19 16 31 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 32 H 0.09 1.01 8.14 -51.92 -0.42 0.58 16 33 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 34 H 0.18 4.15 4.54 -52.49 -0.24 3.91 16 35 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 37 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 309.83 15.07 4.67 4.67 Total: -1.00 -27.72 309.83 -6.47 -34.19 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -4.54 Total: 3.21 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -1.06 Total: 0.02 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.09 Total: -36.66 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.65 Total: -19.03 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.04 Total: -2.45 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.72 -6.47 -34.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297733668.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.325 kcal (2) G-P(sol) polarization free energy of solvation -27.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds