Wall clock time and date at job start Tue Mar 31 2020 06:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47025 * 2 1 4 4 C 1.53001 * 109.46716 * 120.00280 * 2 1 3 5 5 H 1.09006 * 109.46355 * 179.08362 * 4 2 1 6 6 N 1.46894 * 109.47155 * 59.08960 * 4 2 1 7 7 C 1.46898 * 111.00370 * 82.99175 * 6 4 2 8 8 C 1.53005 * 109.47172 * 176.05421 * 7 6 4 9 9 C 1.50697 * 109.46717 * 179.97438 * 8 7 6 10 10 H 1.08002 * 120.00740 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99767 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99788 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00153 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47221 * 60.00772 * 13 11 9 15 15 H 1.48504 * 109.47338 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47406 * 300.00206 * 13 11 9 17 17 C 1.50694 * 109.47120 * 299.08402 * 4 2 1 18 18 C 1.38241 * 119.98610 * 79.73183 * 17 4 2 19 19 C 1.38217 * 120.00931 * 179.72619 * 18 17 4 20 20 C 1.38347 * 119.99208 * 0.54251 * 19 18 17 21 21 Cl 1.73596 * 120.01988 * 179.70520 * 20 19 18 22 22 C 1.38361 * 119.96996 * 359.73146 * 20 19 18 23 23 C 1.38210 * 119.98814 * 359.97438 * 22 20 19 24 24 H 1.08998 * 109.47164 * 306.98732 * 1 2 3 25 25 H 1.08996 * 109.46905 * 186.98587 * 1 2 3 26 26 H 1.09002 * 109.46943 * 66.98859 * 1 2 3 27 27 H 1.08999 * 109.46993 * 239.99936 * 2 1 3 28 28 H 1.09006 * 109.47127 * 60.00467 * 3 2 1 29 29 H 1.08997 * 109.47493 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47760 * 300.00359 * 3 2 1 31 31 H 1.00905 * 110.99750 * 206.94762 * 6 4 2 32 32 H 1.08994 * 109.47291 * 296.06148 * 7 6 4 33 33 H 1.08999 * 109.47129 * 56.05808 * 7 6 4 34 34 H 1.08992 * 109.47096 * 300.00475 * 8 7 6 35 35 H 1.08999 * 109.46778 * 60.00172 * 8 7 6 36 36 H 0.97001 * 120.00232 * 179.97438 * 12 11 9 37 37 H 1.07989 * 119.99366 * 0.02562 * 18 17 4 38 38 H 1.08009 * 120.00570 * 180.27594 * 19 18 17 39 39 H 1.08001 * 120.00733 * 179.97438 * 22 20 19 40 40 H 1.07996 * 119.99616 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1299 -0.7356 1.2410 6 7 1.5324 -2.0997 1.2602 7 6 2.3719 -2.9766 0.4330 8 6 1.8716 -4.4180 0.5474 9 6 2.7325 -5.3173 -0.3017 10 1 3.5546 -4.9025 -0.8662 11 6 2.4714 -6.6700 -0.3572 12 7 1.4707 -7.1753 0.3305 13 14 3.5389 -7.7849 -1.4092 14 1 4.9458 -7.7103 -0.9397 15 1 3.0533 -9.1840 -1.2983 16 1 3.4661 -7.3471 -2.8263 17 6 1.5562 0.0020 2.4796 18 6 0.2640 -0.1910 2.9312 19 6 -0.1784 0.4679 4.0628 20 6 0.6686 1.3292 4.7372 21 17 0.1113 2.1629 6.1542 22 6 1.9600 1.5262 4.2814 23 6 2.4033 0.8622 3.1532 24 1 -0.3633 0.6183 0.8208 25 1 -0.3633 -1.0200 0.1250 26 1 -0.3633 0.4017 -0.9459 27 1 1.8934 -0.5138 -0.8900 28 1 1.6767 1.9563 0.8901 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.4615 -2.4515 2.2033 32 1 2.3188 -2.6549 -0.6071 33 1 3.4045 -2.9220 0.7779 34 1 1.9248 -4.7395 1.5874 35 1 0.8391 -4.4726 0.2025 36 1 1.2868 -8.1269 0.2912 37 1 -0.3983 -0.8603 2.4025 38 1 -1.1866 0.3136 4.4182 39 1 2.6216 2.1988 4.8071 40 1 3.4114 1.0156 2.7976 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298074444.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:13 Heat of formation + Delta-G solvation = -5.171631 kcal Electronic energy + Delta-G solvation = -19614.359144 eV Core-core repulsion = 16646.769656 eV Total energy + Delta-G solvation = -2967.589487 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.01033 -37.39653 -36.25572 -34.21698 -32.54890 -31.23453 -30.88043 -28.83718 -26.99672 -25.40026 -23.59192 -22.70226 -22.02256 -20.54248 -19.23601 -17.08635 -16.35551 -15.76021 -15.70717 -15.10013 -14.74495 -14.43301 -13.97271 -13.71557 -13.58825 -13.41377 -13.18205 -12.63526 -12.38671 -12.06150 -11.92623 -11.66071 -11.56753 -11.48135 -11.20094 -10.98402 -10.89003 -10.79608 -10.72031 -10.52153 -10.30791 -9.96546 -9.40946 -9.18837 -9.08163 -8.60201 -8.36690 -7.88152 -6.01182 -4.03872 1.05184 1.22225 2.01247 3.32404 3.37004 3.39102 3.54582 4.39323 4.54588 4.68923 4.76619 4.81258 5.12026 5.20472 5.28724 5.33941 5.34862 5.49933 5.57895 5.65703 5.77993 5.89017 5.90532 6.04883 6.09897 6.11490 6.16458 6.23518 6.34081 6.38006 6.50266 6.54117 6.67937 6.74537 6.95845 7.43900 7.69859 7.79531 7.91179 8.05351 8.41447 9.03053 9.60001 11.10131 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023611 B = 0.003414 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.625616 B = 8199.927802 C = 8801.827931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.080 4.080 3 C -0.148 4.148 4 C 0.127 3.873 5 H 0.048 0.952 6 N -0.682 5.682 7 C 0.066 3.934 8 C 0.026 3.974 9 C -0.523 4.523 10 H 0.053 0.947 11 C 0.058 3.942 12 N -0.893 5.893 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.069 4.069 18 C -0.085 4.085 19 C -0.114 4.114 20 C -0.039 4.039 21 Cl -0.081 7.081 22 C -0.115 4.115 23 C -0.103 4.103 24 H 0.049 0.951 25 H 0.076 0.924 26 H 0.042 0.958 27 H 0.074 0.926 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.339 0.661 32 H 0.060 0.940 33 H 0.016 0.984 34 H 0.013 0.987 35 H 0.025 0.975 36 H 0.261 0.739 37 H 0.145 0.855 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.416 19.652 6.657 20.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.099 4.099 3 C -0.206 4.206 4 C 0.017 3.983 5 H 0.065 0.935 6 N -0.313 5.313 7 C -0.062 4.062 8 C -0.012 4.012 9 C -0.561 4.561 10 H 0.072 0.928 11 C -0.143 4.143 12 N -0.532 5.532 13 Si 0.720 3.280 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.069 4.069 18 C -0.103 4.103 19 C -0.133 4.133 20 C -0.066 4.066 21 Cl -0.053 7.053 22 C -0.133 4.133 23 C -0.122 4.122 24 H 0.068 0.932 25 H 0.095 0.905 26 H 0.061 0.939 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.157 0.843 32 H 0.078 0.922 33 H 0.034 0.966 34 H 0.031 0.969 35 H 0.044 0.956 36 H 0.071 0.929 37 H 0.163 0.837 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.014 19.654 6.318 20.742 hybrid contribution 1.373 -0.690 0.173 1.546 sum -0.641 18.964 6.490 20.054 Atomic orbital electron populations 1.21862 0.94719 1.03161 1.00262 1.21023 0.96938 0.94710 0.97208 1.21895 1.00556 0.96529 1.01630 1.20537 0.96633 0.89704 0.91440 0.93450 1.60694 1.53411 1.00299 1.16884 1.22211 0.92788 0.95055 0.96108 1.19064 0.97208 0.87891 0.97004 1.21127 1.14516 0.92491 1.28008 0.92838 1.24995 0.95325 0.98233 0.95746 1.69957 1.28989 1.12937 1.41328 0.86656 0.80705 0.79675 0.80940 1.20301 1.21270 1.20218 1.20116 0.94064 0.96657 0.96110 1.21223 0.95824 0.98484 0.94787 1.21107 0.99859 0.96587 0.95729 1.20923 0.95281 0.99078 0.91296 1.98357 1.89703 1.77512 1.39695 1.20952 0.94196 1.00941 0.97258 1.21020 0.99886 0.96579 0.94735 0.93198 0.90472 0.93884 0.90734 0.92659 0.93124 0.92824 0.84279 0.92185 0.96611 0.96879 0.95632 0.92924 0.83690 0.85091 0.85312 0.85410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 7.83 37.16 0.29 -1.50 16 2 C -0.08 -1.01 2.81 -90.62 -0.25 -1.27 16 3 C -0.15 -1.58 8.76 37.15 0.33 -1.26 16 4 C 0.13 1.71 2.12 -68.87 -0.15 1.56 16 5 H 0.05 0.66 7.63 -51.93 -0.40 0.27 16 6 N -0.68 -11.16 4.78 -107.96 -0.52 -11.67 16 7 C 0.07 1.33 5.45 -3.82 -0.02 1.31 16 8 C 0.03 0.65 5.19 -27.88 -0.14 0.51 16 9 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 10 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 13 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 C -0.07 -0.83 3.55 -104.62 -0.37 -1.20 16 18 C -0.08 -1.00 6.96 -39.59 -0.28 -1.28 16 19 C -0.11 -1.26 9.83 -39.55 -0.39 -1.65 16 20 C -0.04 -0.43 6.32 -39.50 -0.25 -0.68 16 21 Cl -0.08 -0.83 28.96 -51.86 -1.50 -2.34 16 22 C -0.11 -1.19 9.83 -39.55 -0.39 -1.58 16 23 C -0.10 -1.12 8.70 -39.59 -0.34 -1.46 16 24 H 0.05 0.59 6.16 -51.93 -0.32 0.27 16 25 H 0.08 1.10 7.19 -51.93 -0.37 0.73 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 1.05 7.43 -51.93 -0.39 0.66 16 28 H 0.05 0.59 6.62 -51.93 -0.34 0.24 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.34 5.59 8.02 -39.29 -0.32 5.28 16 32 H 0.06 1.21 7.43 -51.93 -0.39 0.83 16 33 H 0.02 0.32 7.96 -51.93 -0.41 -0.10 16 34 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.15 1.76 6.79 -52.49 -0.36 1.41 16 38 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 39 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.13 1.20 8.04 -52.49 -0.42 0.77 16 LS Contribution 335.96 15.07 5.06 5.06 Total: -1.00 -28.75 335.96 -9.83 -38.58 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -6.21 Total: 1.67 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: -2.38 Total: -21.87 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.22 Total: -37.62 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.34 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.75 -9.83 -38.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298074444.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.411 kcal (2) G-P(sol) polarization free energy of solvation -28.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds