Wall clock time and date at job start Tue Mar 31 2020 06:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46708 * 2 1 4 4 C 1.52997 * 109.47697 * 119.99701 * 2 1 3 5 5 H 1.08995 * 109.46988 * 60.00016 * 4 2 1 6 6 N 1.46900 * 109.47488 * 180.02562 * 4 2 1 7 7 C 1.46897 * 110.99762 * 275.00351 * 6 4 2 8 8 C 1.53007 * 109.46842 * 180.02562 * 7 6 4 9 9 C 1.50692 * 109.47090 * 179.97438 * 8 7 6 10 10 H 1.08002 * 120.00040 * 359.97438 * 9 8 7 11 11 C 1.37879 * 120.00076 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99791 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00060 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47135 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47038 * 119.99819 * 13 11 9 16 16 H 1.48497 * 109.47151 * 239.99873 * 13 11 9 17 17 C 1.50706 * 109.46958 * 300.00700 * 4 2 1 18 18 C 1.38244 * 119.98773 * 99.99673 * 17 4 2 19 19 C 1.38217 * 120.01084 * 180.02562 * 18 17 4 20 20 C 1.38351 * 119.98541 * 0.25893 * 19 18 17 21 21 Cl 1.73604 * 120.00786 * 179.69323 * 20 19 18 22 22 C 1.38349 * 119.97465 * 359.42086 * 20 19 18 23 23 C 1.38212 * 119.98525 * 0.59771 * 22 20 19 24 24 H 1.08995 * 109.47870 * 60.00386 * 1 2 3 25 25 H 1.09005 * 109.46395 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47544 * 299.99816 * 1 2 3 27 27 H 1.08998 * 109.47544 * 240.00184 * 2 1 3 28 28 H 1.08991 * 109.47280 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.46913 * 300.00130 * 3 2 1 30 30 H 1.08998 * 109.46968 * 59.99830 * 3 2 1 31 31 H 1.00904 * 110.99581 * 151.04539 * 6 4 2 32 32 H 1.09002 * 109.46706 * 299.99118 * 7 6 4 33 33 H 1.08991 * 109.47453 * 59.99908 * 7 6 4 34 34 H 1.08998 * 109.46312 * 299.99707 * 8 7 6 35 35 H 1.08997 * 109.47239 * 59.99211 * 8 7 6 36 36 H 0.97002 * 119.99775 * 180.02562 * 12 11 9 37 37 H 1.07999 * 119.99331 * 0.02562 * 18 17 4 38 38 H 1.08002 * 120.00169 * 179.97438 * 19 18 17 39 39 H 1.08008 * 120.00633 * 180.29755 * 22 20 19 40 40 H 1.08001 * 119.99190 * 179.72131 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 1.2492 5 1 1.6768 -1.7488 1.2493 6 7 3.5091 -0.7206 1.2495 7 6 4.0361 -1.8437 0.4628 8 6 5.5656 -1.8100 0.4870 9 6 6.1062 -2.9624 -0.3195 10 1 5.4269 -3.6504 -0.8008 11 6 7.4681 -3.1387 -0.4429 12 7 8.2953 -2.3007 0.1428 13 14 8.1382 -4.5677 -1.4421 14 1 7.0089 -5.3577 -1.9950 15 1 8.9691 -4.0457 -2.5567 16 1 8.9694 -5.4352 -0.5693 17 6 1.5377 -0.0107 2.4797 18 6 0.4426 -0.5045 3.1639 19 6 -0.0189 0.1469 4.2922 20 6 0.6119 1.2963 4.7336 21 17 0.0278 2.1195 6.1461 22 6 1.7118 1.7863 4.0523 23 6 2.1722 1.1342 2.9240 24 1 -0.3635 0.5137 -0.8899 25 1 -0.3632 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.1298 1.4427 -0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.6765 1.9564 0.8900 31 1 3.8705 -0.7377 2.1914 32 1 3.6869 -2.7830 0.8916 33 1 3.6867 -1.7619 -0.5664 34 1 5.9150 -0.8706 0.0586 35 1 5.9145 -1.8919 1.5163 36 1 9.2534 -2.4244 0.0557 37 1 -0.0523 -1.3995 2.8167 38 1 -0.8747 -0.2388 4.8264 39 1 2.2077 2.6809 4.3993 40 1 3.0281 1.5191 2.3894 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298074448.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:16 Heat of formation + Delta-G solvation = -4.831528 kcal Electronic energy + Delta-G solvation = -19613.123803 eV Core-core repulsion = 16645.549063 eV Total energy + Delta-G solvation = -2967.574739 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.02698 -37.39158 -36.25359 -34.21915 -32.55485 -31.24904 -30.88110 -28.83911 -27.00060 -25.40536 -23.60123 -22.70811 -22.01446 -20.52752 -19.25116 -17.09805 -16.35370 -15.76545 -15.72101 -15.10464 -14.74989 -14.43267 -13.97683 -13.70747 -13.57263 -13.41730 -13.20337 -12.62862 -12.38985 -12.06627 -11.91978 -11.66231 -11.56825 -11.47818 -11.21598 -10.99243 -10.88931 -10.80464 -10.72400 -10.49851 -10.30475 -9.96876 -9.41692 -9.15437 -9.08120 -8.60758 -8.37008 -7.87392 -6.01244 -4.03684 1.04430 1.21278 2.00647 3.30152 3.37721 3.41429 3.53704 4.39293 4.54482 4.68450 4.75995 4.80503 5.11459 5.20725 5.28138 5.33552 5.35047 5.50345 5.57375 5.65417 5.77907 5.88370 5.91532 6.05044 6.09355 6.11387 6.15550 6.22673 6.32695 6.38482 6.51060 6.53382 6.66998 6.73603 6.96602 7.44425 7.70734 7.79221 7.92099 8.06047 8.41908 9.03784 9.60303 11.10139 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023758 B = 0.003405 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.270661 B = 8222.412673 C = 8800.981908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.079 4.079 3 C -0.143 4.143 4 C 0.127 3.873 5 H 0.048 0.952 6 N -0.682 5.682 7 C 0.066 3.934 8 C 0.026 3.974 9 C -0.521 4.521 10 H 0.054 0.946 11 C 0.058 3.942 12 N -0.893 5.893 13 Si 0.891 3.109 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.070 4.070 18 C -0.103 4.103 19 C -0.115 4.115 20 C -0.039 4.039 21 Cl -0.081 7.081 22 C -0.114 4.114 23 C -0.086 4.086 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.042 0.958 30 H 0.052 0.948 31 H 0.338 0.662 32 H 0.015 0.985 33 H 0.059 0.941 34 H 0.025 0.975 35 H 0.013 0.987 36 H 0.260 0.740 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.994 7.931 7.068 20.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 C -0.200 4.200 4 C 0.017 3.983 5 H 0.066 0.934 6 N -0.313 5.313 7 C -0.062 4.062 8 C -0.011 4.011 9 C -0.560 4.560 10 H 0.072 0.928 11 C -0.144 4.144 12 N -0.532 5.532 13 Si 0.719 3.281 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.070 4.070 18 C -0.122 4.122 19 C -0.133 4.133 20 C -0.066 4.066 21 Cl -0.053 7.053 22 C -0.133 4.133 23 C -0.104 4.104 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.157 0.843 32 H 0.034 0.966 33 H 0.078 0.922 34 H 0.044 0.956 35 H 0.031 0.969 36 H 0.070 0.930 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -17.802 8.477 6.693 20.822 hybrid contribution 0.201 -1.506 0.236 1.538 sum -17.601 6.971 6.928 20.159 Atomic orbital electron populations 1.21894 0.95837 1.01272 1.01624 1.21021 0.94261 0.97324 0.97251 1.21875 1.02851 0.94883 1.00420 1.20539 0.89835 0.96540 0.91377 0.93378 1.60696 1.04000 1.47891 1.18684 1.22212 0.99176 0.88490 0.96275 1.19057 0.87467 0.97495 0.97110 1.21205 0.91573 1.11556 1.31649 0.92755 1.24998 0.97167 0.96366 0.95822 1.69979 1.02677 1.36665 1.43866 0.86547 0.78994 0.82504 0.80012 1.19780 1.20982 1.21040 1.20136 0.95173 0.95628 0.96103 1.21022 0.96566 0.99976 0.94637 1.20955 1.00556 0.94492 0.97337 1.20922 0.98118 0.96134 0.91386 1.98358 1.88281 1.78557 1.40058 1.21105 0.95555 1.00919 0.95702 1.21220 0.99977 0.94356 0.94831 0.92816 0.93119 0.92682 0.90696 0.90742 0.93924 0.92932 0.84329 0.96646 0.92216 0.95623 0.96866 0.93050 0.85397 0.85301 0.85072 0.83657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.79 37.16 0.33 -1.26 16 2 C -0.08 -1.01 2.83 -90.62 -0.26 -1.27 16 3 C -0.14 -1.80 7.95 37.16 0.30 -1.50 16 4 C 0.13 1.71 2.12 -68.86 -0.15 1.57 16 5 H 0.05 0.67 7.66 -51.93 -0.40 0.27 16 6 N -0.68 -11.17 4.93 -107.95 -0.53 -11.70 16 7 C 0.07 1.33 5.42 -3.82 -0.02 1.31 16 8 C 0.03 0.66 5.23 -27.88 -0.15 0.52 16 9 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 10 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 12 N -0.89 -26.68 13.29 55.43 0.74 -25.95 16 13 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 14 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 C -0.07 -0.84 3.56 -104.62 -0.37 -1.21 16 18 C -0.10 -1.11 8.70 -39.59 -0.34 -1.46 16 19 C -0.11 -1.19 9.83 -39.55 -0.39 -1.58 16 20 C -0.04 -0.43 6.32 -39.50 -0.25 -0.68 16 21 Cl -0.08 -0.83 28.96 -51.86 -1.50 -2.33 16 22 C -0.11 -1.25 9.83 -39.55 -0.39 -1.64 16 23 C -0.09 -1.01 6.79 -39.59 -0.27 -1.28 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.58 6.64 -51.93 -0.34 0.24 16 27 H 0.07 1.06 7.45 -51.93 -0.39 0.68 16 28 H 0.07 1.07 7.60 -51.93 -0.39 0.68 16 29 H 0.04 0.50 8.14 -51.92 -0.42 0.07 16 30 H 0.05 0.62 5.60 -51.93 -0.29 0.33 16 31 H 0.34 5.56 7.99 -39.29 -0.31 5.24 16 32 H 0.02 0.31 8.06 -51.93 -0.42 -0.11 16 33 H 0.06 1.21 7.44 -51.93 -0.39 0.82 16 34 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.13 1.19 8.04 -52.49 -0.42 0.77 16 38 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 40 H 0.15 1.76 6.89 -52.49 -0.36 1.40 16 LS Contribution 336.21 15.07 5.07 5.07 Total: -1.00 -28.85 336.21 -9.84 -38.69 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -6.22 Total: 1.53 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: -2.37 Total: -21.82 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.20 Total: -37.64 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.33 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.85 -9.84 -38.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298074448.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.857 kcal (2) G-P(sol) polarization free energy of solvation -28.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds