Wall clock time and date at job start Tue Mar 31 2020 05:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37099 * 120.00188 * 2 1 4 4 H 1.07995 * 120.00063 * 202.39802 * 3 2 1 5 5 C 1.38949 * 119.99629 * 22.40274 * 3 2 1 6 6 N 1.31404 * 120.00553 * 11.60880 * 5 3 2 7 7 Si 1.86805 * 119.99505 * 191.60903 * 5 3 2 8 8 H 1.48498 * 109.47187 * 359.97438 * 7 5 3 9 9 H 1.48495 * 109.47123 * 120.00165 * 7 5 3 10 10 H 1.48508 * 109.46784 * 240.00067 * 7 5 3 11 11 C 1.34783 * 119.99951 * 179.97438 * 2 1 3 12 12 O 1.21290 * 119.99826 * 180.02562 * 11 2 1 13 13 C 1.50698 * 119.99742 * 0.02562 * 11 2 1 14 14 C 1.53002 * 109.47176 * 180.02562 * 13 11 2 15 15 C 1.52995 * 109.47398 * 180.02562 * 14 13 11 16 16 O 1.42902 * 109.47224 * 179.97438 * 15 14 13 17 17 C 1.35956 * 116.99997 * 179.97438 * 16 15 14 18 18 C 1.38657 * 120.06497 * 359.97438 * 17 16 15 19 19 C 1.38183 * 119.97229 * 180.02562 * 18 17 16 20 20 C 1.38257 * 120.09309 * 0.02562 * 19 18 17 21 21 C 1.38262 * 120.12645 * 359.97438 * 20 19 18 22 22 C 1.38333 * 120.02917 * 0.02562 * 21 20 19 23 23 F 1.35096 * 120.04481 * 180.02562 * 22 21 20 24 24 H 1.08995 * 109.47598 * 272.15653 * 1 2 3 25 25 H 1.09004 * 109.47273 * 32.15723 * 1 2 3 26 26 H 1.09000 * 109.47417 * 152.15538 * 1 2 3 27 27 H 0.97001 * 120.00541 * 180.02562 * 6 5 3 28 28 H 1.08995 * 109.47338 * 60.00133 * 13 11 2 29 29 H 1.09001 * 109.47687 * 299.99597 * 13 11 2 30 30 H 1.09002 * 109.47475 * 59.99368 * 14 13 11 31 31 H 1.09003 * 109.46888 * 300.00196 * 14 13 11 32 32 H 1.08995 * 109.47370 * 59.99863 * 15 14 13 33 33 H 1.09003 * 109.47118 * 299.99880 * 15 14 13 34 34 H 1.08009 * 120.01370 * 0.04327 * 18 17 16 35 35 H 1.07991 * 119.95225 * 180.27059 * 19 18 17 36 36 H 1.07999 * 119.94084 * 179.97438 * 20 19 18 37 37 H 1.08005 * 119.97963 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1693 1.2225 -0.3564 5 6 1.5344 2.3452 0.4586 6 7 0.3897 2.2708 1.0996 7 14 2.3334 4.0078 0.1639 8 1 3.6080 3.8205 -0.5747 9 1 1.4186 4.8620 -0.6351 10 1 2.6092 4.6625 1.4680 11 6 2.1389 -1.1673 0.0005 12 8 3.3517 -1.1672 0.0010 13 6 1.3853 -2.4723 0.0005 14 6 2.3795 -3.6353 0.0018 15 6 1.6145 -4.9603 0.0012 16 8 2.5431 -6.0465 0.0018 17 6 2.0234 -7.3028 0.0018 18 6 0.6490 -7.4860 0.0019 19 6 0.1228 -8.7637 0.0025 20 6 0.9650 -9.8602 0.0036 21 6 2.3361 -9.6821 0.0036 22 6 2.8683 -8.4053 0.0030 23 9 4.2080 -8.2309 0.0024 24 1 -0.3634 0.0387 1.0269 25 1 -0.3634 0.8700 -0.5470 26 1 -0.3634 -0.9087 -0.4800 27 1 -0.0406 3.0791 1.4194 28 1 0.7590 -2.5303 -0.8896 29 1 0.7583 -2.5299 0.8903 30 1 3.0056 -3.5772 0.8922 31 1 3.0068 -3.5779 -0.8877 32 1 0.9888 -5.0182 -0.8894 33 1 0.9868 -5.0179 0.8905 34 1 -0.0101 -6.6303 0.0012 35 1 -0.9477 -8.9060 -0.0019 36 1 0.5511 -10.8577 0.0045 37 1 2.9918 -10.5403 0.0040 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299525022.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:25 Heat of formation + Delta-G solvation = -91.889641 kcal Electronic energy + Delta-G solvation = -20895.726767 eV Core-core repulsion = 17360.207435 eV Total energy + Delta-G solvation = -3535.519332 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.87021 -40.16193 -38.55476 -37.64720 -34.82627 -33.35121 -31.58100 -30.94204 -30.02685 -27.42066 -26.07201 -24.42511 -23.17521 -22.60710 -21.28668 -18.98934 -18.29517 -17.24795 -16.88443 -16.74789 -16.52267 -15.91169 -15.52840 -15.23381 -14.73752 -14.59517 -14.45903 -14.04971 -13.84363 -13.24460 -13.01831 -12.45799 -12.38707 -12.16870 -11.74194 -11.73101 -11.56628 -11.41101 -11.18342 -11.09476 -10.94879 -10.80606 -10.43990 -10.31555 -10.20956 -9.20993 -9.04030 -8.40773 -8.38948 -7.68758 -6.31584 -3.88021 0.86282 1.02288 2.92988 3.14874 3.25368 3.32731 3.33002 3.89213 4.03822 4.14588 4.45923 4.56657 4.81617 4.89094 4.95211 4.98146 5.12506 5.13775 5.23270 5.31533 5.60532 5.68850 5.71628 5.79594 5.86252 5.92888 6.04304 6.10842 6.33682 6.41550 6.43367 6.60683 6.86496 7.19705 7.20948 7.56770 8.13338 8.48591 9.19178 9.42903 9.98378 10.72247 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.044102 B = 0.002748 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.740006 B =10185.250940 C =10741.349827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.449 5.449 3 C -0.305 4.305 4 H 0.099 0.901 5 C 0.029 3.971 6 N -0.885 5.885 7 Si 0.926 3.074 8 H -0.268 1.268 9 H -0.281 1.281 10 H -0.281 1.281 11 C 0.446 3.554 12 O -0.589 6.589 13 C -0.125 4.125 14 C -0.099 4.099 15 C 0.059 3.941 16 O -0.304 6.304 17 C 0.105 3.895 18 C -0.185 4.185 19 C -0.089 4.089 20 C -0.136 4.136 21 C -0.118 4.118 22 C 0.064 3.936 23 F -0.132 7.132 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.026 0.974 27 H 0.266 0.734 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.140 0.860 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.460 -20.599 -2.103 21.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.168 5.168 3 C -0.433 4.433 4 H 0.117 0.883 5 C -0.174 4.174 6 N -0.525 5.525 7 Si 0.753 3.247 8 H -0.192 1.192 9 H -0.207 1.207 10 H -0.207 1.207 11 C 0.234 3.766 12 O -0.474 6.474 13 C -0.166 4.166 14 C -0.137 4.137 15 C -0.016 4.016 16 O -0.217 6.217 17 C 0.058 3.942 18 C -0.204 4.204 19 C -0.108 4.108 20 C -0.155 4.155 21 C -0.137 4.137 22 C 0.044 3.956 23 F -0.111 7.111 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.045 0.955 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.157 0.843 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.756 -20.336 -2.023 20.983 hybrid contribution 0.010 1.007 0.003 1.007 sum -4.746 -19.330 -2.020 20.006 Atomic orbital electron populations 1.21505 0.81170 0.98767 1.01694 1.43617 1.05535 1.04841 1.62799 1.19718 0.99481 0.83843 1.40221 0.88337 1.25343 0.96537 1.00096 0.95431 1.69999 1.17441 1.29138 1.35891 0.85859 0.79272 0.81408 0.78156 1.19224 1.20683 1.20744 1.19940 0.88046 0.84775 0.83861 1.90527 1.14006 1.87154 1.55748 1.21402 0.98518 0.93756 1.02900 1.21208 0.98213 0.89029 1.05201 1.23061 0.91946 0.85236 1.01343 1.86185 1.36327 1.11408 1.87793 1.19119 0.92070 0.84981 0.98015 1.21263 0.92966 0.99287 1.06890 1.21031 1.00296 0.91605 0.97832 1.20906 0.92235 0.99421 1.02903 1.21023 0.96500 0.94801 1.01334 1.17058 0.77149 0.92110 1.09301 1.91513 1.29178 1.96156 1.94227 0.92409 0.91314 0.95535 0.92349 0.90320 0.90113 0.90150 0.90235 0.91794 0.91725 0.84263 0.85086 0.84989 0.84215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.46 8.52 59.84 0.51 2.97 16 2 N -0.45 -11.51 3.02 -122.20 -0.37 -11.88 16 3 C -0.30 -8.57 9.29 -14.93 -0.14 -8.71 16 4 H 0.10 2.92 7.41 -52.49 -0.39 2.53 16 5 C 0.03 0.76 5.11 -17.47 -0.09 0.67 16 6 N -0.88 -23.57 10.62 55.50 0.59 -22.98 16 7 Si 0.93 20.88 29.57 -169.99 -5.03 15.86 16 8 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 9 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 11 C 0.45 10.77 7.63 -10.98 -0.08 10.69 16 12 O -0.59 -16.45 15.67 5.55 0.09 -16.36 16 13 C -0.13 -2.16 4.22 -27.88 -0.12 -2.28 16 14 C -0.10 -1.60 4.87 -26.73 -0.13 -1.73 16 15 C 0.06 0.75 4.74 37.15 0.18 0.93 16 16 O -0.30 -4.49 10.00 -19.60 -0.20 -4.69 16 17 C 0.11 1.34 6.69 -39.18 -0.26 1.08 16 18 C -0.19 -1.84 9.04 -39.45 -0.36 -2.20 16 19 C -0.09 -0.71 10.04 -39.59 -0.40 -1.11 16 20 C -0.14 -1.04 10.04 -39.57 -0.40 -1.44 16 21 C -0.12 -1.09 10.02 -39.54 -0.40 -1.48 16 22 C 0.06 0.79 7.31 -39.30 -0.29 0.51 16 23 F -0.13 -1.89 17.11 2.25 0.04 -1.85 16 24 H 0.06 1.31 7.54 -51.93 -0.39 0.92 16 25 H 0.07 1.59 7.06 -51.93 -0.37 1.22 16 26 H 0.03 0.46 6.36 -51.93 -0.33 0.13 16 27 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 28 H 0.08 1.17 7.41 -51.93 -0.38 0.79 16 29 H 0.08 1.26 8.11 -51.93 -0.42 0.84 16 30 H 0.08 1.44 8.10 -51.93 -0.42 1.02 16 31 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 32 H 0.06 0.69 7.66 -51.93 -0.40 0.29 16 33 H 0.06 0.71 7.66 -51.93 -0.40 0.31 16 34 H 0.14 1.16 6.30 -52.48 -0.33 0.83 16 35 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 37 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 LS Contribution 319.03 15.07 4.81 4.81 Total: -1.00 -32.59 319.03 -6.69 -39.28 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -4.65 Total: -0.08 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -1.97 Total: -2.10 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.22 Total: -34.86 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.11 Total: -21.05 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.59 -6.69 -39.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299525022.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.609 kcal (2) G-P(sol) polarization free energy of solvation -32.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds