Wall clock time and date at job start Tue Mar 31 2020 05:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37099 * 120.00188 * 2 1 4 4 H 1.07995 * 120.00063 * 202.39802 * 3 2 1 5 5 C 1.38949 * 119.99629 * 22.40274 * 3 2 1 6 6 N 1.31404 * 120.00553 * 11.60880 * 5 3 2 7 7 Si 1.86805 * 119.99505 * 191.60903 * 5 3 2 8 8 H 1.48498 * 109.47187 * 359.97438 * 7 5 3 9 9 H 1.48495 * 109.47123 * 120.00165 * 7 5 3 10 10 H 1.48508 * 109.46784 * 240.00067 * 7 5 3 11 11 C 1.34783 * 119.99951 * 179.97438 * 2 1 3 12 12 O 1.21290 * 119.99826 * 180.02562 * 11 2 1 13 13 C 1.50698 * 119.99742 * 0.02562 * 11 2 1 14 14 C 1.53002 * 109.47176 * 180.02562 * 13 11 2 15 15 C 1.52995 * 109.47398 * 180.02562 * 14 13 11 16 16 O 1.42902 * 109.47224 * 179.97438 * 15 14 13 17 17 C 1.35956 * 116.99997 * 179.97438 * 16 15 14 18 18 C 1.38657 * 120.06497 * 359.97438 * 17 16 15 19 19 C 1.38183 * 119.97229 * 180.02562 * 18 17 16 20 20 C 1.38257 * 120.09309 * 0.02562 * 19 18 17 21 21 C 1.38262 * 120.12645 * 359.97438 * 20 19 18 22 22 C 1.38333 * 120.02917 * 0.02562 * 21 20 19 23 23 F 1.35096 * 120.04481 * 180.02562 * 22 21 20 24 24 H 1.08995 * 109.47598 * 272.15653 * 1 2 3 25 25 H 1.09004 * 109.47273 * 32.15723 * 1 2 3 26 26 H 1.09000 * 109.47417 * 152.15538 * 1 2 3 27 27 H 0.97001 * 120.00541 * 180.02562 * 6 5 3 28 28 H 1.08995 * 109.47338 * 60.00133 * 13 11 2 29 29 H 1.09001 * 109.47687 * 299.99597 * 13 11 2 30 30 H 1.09002 * 109.47475 * 59.99368 * 14 13 11 31 31 H 1.09003 * 109.46888 * 300.00196 * 14 13 11 32 32 H 1.08995 * 109.47370 * 59.99863 * 15 14 13 33 33 H 1.09003 * 109.47118 * 299.99880 * 15 14 13 34 34 H 1.08009 * 120.01370 * 0.04327 * 18 17 16 35 35 H 1.07991 * 119.95225 * 180.27059 * 19 18 17 36 36 H 1.07999 * 119.94084 * 179.97438 * 20 19 18 37 37 H 1.08005 * 119.97963 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1693 1.2225 -0.3564 5 6 1.5344 2.3452 0.4586 6 7 0.3897 2.2708 1.0996 7 14 2.3334 4.0078 0.1639 8 1 3.6080 3.8205 -0.5747 9 1 1.4186 4.8620 -0.6351 10 1 2.6092 4.6625 1.4680 11 6 2.1389 -1.1673 0.0005 12 8 3.3517 -1.1672 0.0010 13 6 1.3853 -2.4723 0.0005 14 6 2.3795 -3.6353 0.0018 15 6 1.6145 -4.9603 0.0012 16 8 2.5431 -6.0465 0.0018 17 6 2.0234 -7.3028 0.0018 18 6 0.6490 -7.4860 0.0019 19 6 0.1228 -8.7637 0.0025 20 6 0.9650 -9.8602 0.0036 21 6 2.3361 -9.6821 0.0036 22 6 2.8683 -8.4053 0.0030 23 9 4.2080 -8.2309 0.0024 24 1 -0.3634 0.0387 1.0269 25 1 -0.3634 0.8700 -0.5470 26 1 -0.3634 -0.9087 -0.4800 27 1 -0.0406 3.0791 1.4194 28 1 0.7590 -2.5303 -0.8896 29 1 0.7583 -2.5299 0.8903 30 1 3.0056 -3.5772 0.8922 31 1 3.0068 -3.5779 -0.8877 32 1 0.9888 -5.0182 -0.8894 33 1 0.9868 -5.0179 0.8905 34 1 -0.0101 -6.6303 0.0012 35 1 -0.9477 -8.9060 -0.0019 36 1 0.5511 -10.8577 0.0045 37 1 2.9918 -10.5403 0.0040 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299525022.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:24 Heat of formation + Delta-G solvation = -112.039269 kcal Electronic energy + Delta-G solvation = -20896.600520 eV Core-core repulsion = 17360.207435 eV Total energy + Delta-G solvation = -3536.393086 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.82395 -41.03703 -40.37607 -38.49899 -36.75992 -34.76527 -33.57269 -31.63857 -30.87158 -28.89086 -27.75546 -26.15096 -24.22939 -23.39346 -22.41672 -20.57438 -19.33633 -18.89686 -18.18903 -17.80451 -17.55423 -17.44626 -16.70355 -16.48899 -16.07185 -15.94569 -15.75592 -15.35089 -14.90017 -14.70086 -14.25934 -13.78395 -13.64469 -13.36456 -13.25340 -13.08478 -12.97943 -12.77005 -12.64036 -12.39306 -12.36099 -12.17597 -12.11946 -11.88883 -11.58972 -11.03349 -10.37911 -9.91840 -9.69408 -9.20245 -8.34012 -5.99398 0.15272 0.29689 1.34525 1.39614 1.53337 1.99681 2.03744 2.28810 2.63878 3.08169 3.12010 3.28688 3.73157 3.86250 3.91619 3.98209 4.10890 4.22225 4.34950 4.37706 4.42301 4.44862 4.57932 4.62287 4.83177 5.02331 5.03577 5.12046 5.13039 5.25270 5.29202 5.42427 5.43856 5.45614 5.75733 6.09207 6.33876 6.48362 7.16856 7.48099 8.03761 8.67524 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.044102 B = 0.002748 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.740006 B =10185.250940 C =10741.349827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.466 5.466 3 C -0.346 4.346 4 H 0.067 0.933 5 C -0.003 4.003 6 N -0.895 5.895 7 Si 0.988 3.012 8 H -0.277 1.277 9 H -0.263 1.263 10 H -0.275 1.275 11 C 0.431 3.569 12 O -0.640 6.640 13 C -0.109 4.109 14 C -0.093 4.093 15 C 0.067 3.933 16 O -0.338 6.338 17 C 0.075 3.925 18 C -0.187 4.187 19 C -0.083 4.083 20 C -0.127 4.127 21 C -0.117 4.117 22 C 0.024 3.976 23 F -0.155 7.155 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.076 0.924 27 H 0.273 0.727 28 H 0.115 0.885 29 H 0.107 0.893 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.157 0.843 35 H 0.166 0.834 36 H 0.168 0.832 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.558 -22.219 -2.260 23.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.185 5.185 3 C -0.474 4.474 4 H 0.085 0.915 5 C -0.204 4.204 6 N -0.534 5.534 7 Si 0.812 3.188 8 H -0.202 1.202 9 H -0.188 1.188 10 H -0.201 1.201 11 C 0.222 3.778 12 O -0.529 6.529 13 C -0.149 4.149 14 C -0.131 4.131 15 C -0.007 4.007 16 O -0.253 6.253 17 C 0.029 3.971 18 C -0.206 4.206 19 C -0.101 4.101 20 C -0.145 4.145 21 C -0.136 4.136 22 C 0.004 3.996 23 F -0.134 7.134 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.133 0.867 29 H 0.126 0.874 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.175 0.825 35 H 0.184 0.816 36 H 0.186 0.814 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.902 -21.972 -2.175 23.450 hybrid contribution 0.940 1.412 0.072 1.697 sum -6.962 -20.560 -2.103 21.808 Atomic orbital electron populations 1.21500 0.78942 1.00495 1.01344 1.43920 1.07040 1.04652 1.62893 1.19626 0.99114 0.86076 1.42565 0.91518 1.26058 0.97050 1.02755 0.94575 1.70059 1.17781 1.30325 1.35263 0.84960 0.78269 0.77366 0.78228 1.20151 1.18785 1.20089 1.21173 0.87971 0.86666 0.82029 1.90489 1.16631 1.88213 1.57539 1.21332 0.98266 0.89583 1.05744 1.21059 0.97977 0.91349 1.02750 1.22956 0.91155 0.82935 1.03669 1.86106 1.37783 1.12671 1.88716 1.19433 0.93532 0.83997 1.00157 1.21552 0.91711 1.01044 1.06291 1.21508 1.02146 0.90685 0.95716 1.21390 0.91304 1.01200 1.00581 1.21350 0.97861 0.93985 1.00392 1.17626 0.76432 0.93703 1.11812 1.91440 1.30889 1.96398 1.94710 0.93414 0.93076 0.90519 0.91680 0.86724 0.87431 0.92972 0.92577 0.89168 0.89466 0.82510 0.81616 0.81443 0.82396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.09 8.52 127.77 1.09 6.18 16 2 N -0.47 -24.17 3.02 -658.91 -1.99 -26.16 16 3 C -0.35 -20.06 9.29 84.04 0.78 -19.28 16 4 H 0.07 4.19 7.41 -2.91 -0.02 4.17 16 5 C 0.00 -0.15 5.11 84.93 0.43 0.29 16 6 N -0.90 -47.35 10.62 21.66 0.23 -47.12 16 7 Si 0.99 43.07 29.57 68.60 2.03 45.10 16 8 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 9 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 10 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 11 C 0.43 21.19 7.63 87.66 0.67 21.86 16 12 O -0.64 -37.56 15.67 -3.06 -0.05 -37.61 16 13 C -0.11 -3.60 4.22 29.85 0.13 -3.47 16 14 C -0.09 -3.04 4.87 30.59 0.15 -2.89 16 15 C 0.07 1.60 4.74 71.98 0.34 1.94 16 16 O -0.34 -10.11 10.00 -93.05 -0.93 -11.04 16 17 C 0.07 1.87 6.69 22.53 0.15 2.02 16 18 C -0.19 -3.19 9.04 22.36 0.20 -2.99 16 19 C -0.08 -0.97 10.04 22.26 0.22 -0.75 16 20 C -0.13 -1.45 10.04 22.28 0.22 -1.23 16 21 C -0.12 -1.96 10.02 22.30 0.22 -1.74 16 22 C 0.02 0.60 7.31 22.45 0.16 0.76 16 23 F -0.16 -4.73 17.11 44.97 0.77 -3.96 16 24 H 0.05 2.10 7.54 -2.39 -0.02 2.08 16 25 H 0.05 2.32 7.06 -2.38 -0.02 2.30 16 26 H 0.08 2.43 6.36 -2.39 -0.02 2.41 16 27 H 0.27 13.47 8.31 -92.71 -0.77 12.70 16 28 H 0.11 2.98 7.41 -2.39 -0.02 2.97 16 29 H 0.11 3.02 8.11 -2.39 -0.02 3.00 16 30 H 0.05 1.96 8.10 -2.39 -0.02 1.94 16 31 H 0.06 2.06 8.10 -2.39 -0.02 2.04 16 32 H 0.09 1.66 7.66 -2.39 -0.02 1.64 16 33 H 0.09 1.67 7.66 -2.39 -0.02 1.65 16 34 H 0.16 2.00 6.30 -2.91 -0.02 1.98 16 35 H 0.17 0.81 8.06 -2.92 -0.02 0.79 16 36 H 0.17 0.74 8.06 -2.91 -0.02 0.71 16 37 H 0.16 1.91 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -76.34 319.03 5.91 -70.43 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 1.08 Total: 9.67 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 4.78 Total: 0.71 kcal Atomic # 7 Polarization: -71.53 SS G_CDS: -1.76 Total: -73.28 kcal Atomic # 8 Polarization: -47.68 SS G_CDS: -0.98 Total: -48.65 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 0.77 Total: -3.96 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -76.34 5.91 -70.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299525022.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.613 kcal (2) G-P(sol) polarization free energy of solvation -76.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds