Wall clock time and date at job start Tue Mar 31 2020 05:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46492 * 109.46965 * 2 1 4 4 C 1.37104 * 120.00166 * 263.32008 * 3 2 1 5 5 H 1.08004 * 120.00003 * 191.11763 * 4 3 2 6 6 C 1.38948 * 120.00120 * 11.12016 * 4 3 2 7 7 N 1.31422 * 119.99427 * 15.12548 * 6 4 3 8 8 Si 1.86796 * 120.00333 * 195.12865 * 6 4 3 9 9 H 1.48487 * 109.47319 * 89.99798 * 8 6 4 10 10 H 1.48506 * 109.46880 * 210.00044 * 8 6 4 11 11 H 1.48500 * 109.46863 * 329.99437 * 8 6 4 12 12 C 1.34777 * 120.00366 * 83.32234 * 3 2 1 13 13 O 1.21288 * 120.00453 * 176.82783 * 12 3 2 14 14 C 1.50706 * 119.99633 * 356.83551 * 12 3 2 15 15 H 1.09005 * 109.46893 * 334.16625 * 14 12 3 16 16 C 1.52999 * 109.46888 * 214.16768 * 14 12 3 17 17 O 1.42896 * 109.47295 * 62.85032 * 16 14 12 18 18 C 1.50700 * 109.47128 * 94.16368 * 14 12 3 19 19 C 1.38240 * 119.97381 * 59.73021 * 18 14 12 20 20 C 1.38196 * 120.02631 * 179.76456 * 19 18 14 21 21 C 1.38456 * 119.97366 * 0.50571 * 20 19 18 22 22 F 1.35104 * 120.02951 * 179.76983 * 21 20 19 23 23 C 1.38462 * 119.94938 * 359.74574 * 21 20 19 24 24 C 1.38204 * 119.97380 * 0.02562 * 23 21 20 25 25 H 1.09008 * 109.47196 * 180.75362 * 1 2 3 26 26 H 1.09000 * 109.47110 * 300.75068 * 1 2 3 27 27 H 1.08999 * 109.47396 * 60.75233 * 1 2 3 28 28 H 1.09000 * 109.46573 * 240.00394 * 2 1 3 29 29 H 1.09001 * 109.47210 * 120.00240 * 2 1 3 30 30 H 0.96997 * 119.99385 * 179.97438 * 7 6 4 31 31 H 1.08996 * 109.47068 * 302.84569 * 16 14 12 32 32 H 1.08999 * 109.46806 * 182.85001 * 16 14 12 33 33 H 0.96699 * 113.99873 * 175.00495 * 17 16 14 34 34 H 1.08006 * 119.98630 * 0.02562 * 19 18 14 35 35 H 1.08001 * 120.01438 * 180.24963 * 20 19 18 36 36 H 1.08003 * 120.01466 * 179.97438 * 23 21 20 37 37 H 1.07999 * 119.98604 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3770 1.9815 -1.1793 5 1 2.9018 2.9254 -1.1670 6 6 2.0654 1.3756 -2.3902 7 7 1.1843 0.4013 -2.4299 8 14 2.8988 1.9458 -3.9618 9 1 4.1427 1.1633 -4.1743 10 1 1.9816 1.7394 -5.1113 11 1 3.2342 3.3880 -3.8489 12 6 2.1150 2.0618 1.1592 13 8 2.5731 3.1848 1.1668 14 6 1.6539 1.4274 2.4462 15 1 0.8926 0.6780 2.2295 16 6 1.0654 2.5022 3.3624 17 8 -0.0851 3.0793 2.7418 18 6 2.8251 0.7704 3.1301 19 6 3.9224 1.5261 3.4989 20 6 4.9949 0.9256 4.1305 21 6 4.9746 -0.4353 4.3845 22 9 6.0245 -1.0243 4.9978 23 6 3.8773 -1.1921 4.0101 24 6 2.8038 -0.5886 3.3828 25 1 -0.3634 -1.0276 0.0135 26 1 -0.3633 0.5254 0.8832 27 1 -0.3634 0.5021 -0.8966 28 1 1.8932 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8900 30 1 0.9665 -0.0215 -3.2753 31 1 1.8109 3.2777 3.5381 32 1 0.7784 2.0521 4.3127 33 1 -0.5549 3.7152 3.2986 34 1 3.9396 2.5870 3.2971 35 1 5.8503 1.5169 4.4221 36 1 3.8605 -2.2539 4.2074 37 1 1.9477 -1.1787 3.0910 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339256166.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:14 Heat of formation + Delta-G solvation = -91.353786 kcal Electronic energy + Delta-G solvation = -22684.583128 eV Core-core repulsion = 19149.087032 eV Total energy + Delta-G solvation = -3535.496096 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.79778 -39.78153 -38.04249 -36.35234 -34.97924 -32.77732 -31.50490 -30.99662 -29.37419 -28.03255 -25.22913 -23.40951 -22.86205 -22.18298 -21.29508 -18.61074 -17.60988 -17.13238 -17.00867 -16.51797 -15.69753 -15.49506 -15.21534 -14.71668 -14.22679 -14.13063 -13.77500 -13.46048 -13.31187 -13.21189 -12.90615 -12.72137 -12.15567 -11.97545 -11.67103 -11.54137 -11.08233 -11.02731 -10.98509 -10.71726 -10.62432 -10.28647 -10.05681 -9.87548 -9.58647 -8.97485 -8.86172 -8.73251 -8.08447 -7.67195 -6.23909 -3.76768 1.23833 1.36799 3.17867 3.27325 3.32596 3.66389 3.89028 4.14240 4.36426 4.50212 4.79896 4.94612 4.97513 5.10919 5.32100 5.41431 5.46825 5.47669 5.63424 5.77852 5.97081 6.03406 6.14189 6.20423 6.24160 6.27944 6.39879 6.66609 6.71690 6.72389 6.83147 7.01420 7.40484 7.55860 7.78010 7.98347 8.14072 8.56696 9.22390 9.49899 10.03739 10.72354 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016704 B = 0.005940 C = 0.005284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.794513 B = 4712.592183 C = 5297.281093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.116 3.884 3 N -0.438 5.438 4 C -0.294 4.294 5 H 0.102 0.898 6 C 0.023 3.977 7 N -0.877 5.877 8 Si 0.926 3.074 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.271 1.271 12 C 0.465 3.535 13 O -0.589 6.589 14 C -0.070 4.070 15 H 0.101 0.899 16 C 0.102 3.898 17 O -0.560 6.560 18 C -0.071 4.071 19 C -0.073 4.073 20 C -0.153 4.153 21 C 0.088 3.912 22 F -0.146 7.146 23 C -0.154 4.154 24 C -0.083 4.083 25 H 0.035 0.965 26 H 0.027 0.973 27 H 0.088 0.912 28 H 0.114 0.886 29 H 0.026 0.974 30 H 0.265 0.735 31 H 0.056 0.944 32 H 0.042 0.958 33 H 0.373 0.627 34 H 0.141 0.859 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.703 -3.578 11.925 12.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.007 4.007 3 N -0.156 5.156 4 C -0.422 4.422 5 H 0.120 0.880 6 C -0.178 4.178 7 N -0.518 5.518 8 Si 0.753 3.247 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.195 1.195 12 C 0.253 3.747 13 O -0.475 6.475 14 C -0.092 4.092 15 H 0.119 0.881 16 C 0.024 3.976 17 O -0.364 6.364 18 C -0.072 4.072 19 C -0.091 4.091 20 C -0.172 4.172 21 C 0.069 3.931 22 F -0.124 7.124 23 C -0.173 4.173 24 C -0.101 4.101 25 H 0.054 0.946 26 H 0.046 0.954 27 H 0.106 0.894 28 H 0.132 0.868 29 H 0.044 0.956 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.218 0.782 34 H 0.159 0.841 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.081 -3.570 11.253 11.855 hybrid contribution 0.284 0.219 -0.262 0.444 sum 1.365 -3.351 10.990 11.570 Atomic orbital electron populations 1.22145 0.96820 0.99463 1.02081 1.21644 0.94389 0.83714 1.00987 1.43741 1.55159 1.11262 1.05398 1.19788 1.33516 1.06771 0.82157 0.88008 1.25229 0.96241 0.97083 0.99229 1.70051 1.29943 1.25415 1.26374 0.85919 0.78855 0.79232 0.80684 1.20528 1.21030 1.19528 1.19374 0.84902 0.86185 0.84279 1.90474 1.50889 1.19816 1.86274 1.20299 0.95490 0.98244 0.95117 0.88091 1.21901 0.87852 0.94811 0.93048 1.86596 1.42314 1.62053 1.45463 1.19602 0.95778 0.93635 0.98215 1.21100 0.91696 1.01291 0.95047 1.21114 1.00499 0.93049 1.02525 1.17718 0.85419 0.91608 0.98381 1.91469 1.55758 1.84418 1.80779 1.21044 0.93512 1.00432 1.02326 1.20964 0.98163 0.93942 0.97042 0.94571 0.95385 0.89373 0.86840 0.95570 0.92436 0.92594 0.93978 0.78169 0.84148 0.84894 0.84856 0.84804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.39 37.16 0.35 -2.79 16 2 C 0.12 2.63 4.92 -4.05 -0.02 2.61 16 3 N -0.44 -11.27 2.64 -114.81 -0.30 -11.58 16 4 C -0.29 -8.22 9.48 -14.93 -0.14 -8.37 16 5 H 0.10 3.01 7.25 -52.48 -0.38 2.63 16 6 C 0.02 0.61 5.12 -17.46 -0.09 0.52 16 7 N -0.88 -22.52 8.22 55.50 0.46 -22.06 16 8 Si 0.93 20.80 29.58 -169.99 -5.03 15.78 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 12 C 0.47 11.32 5.94 -10.98 -0.07 11.25 16 13 O -0.59 -16.07 15.30 5.55 0.08 -15.98 16 14 C -0.07 -1.31 1.79 -92.92 -0.17 -1.48 16 15 H 0.10 1.85 4.64 -51.93 -0.24 1.61 16 16 C 0.10 1.68 5.93 37.16 0.22 1.90 16 17 O -0.56 -9.81 13.36 -35.23 -0.47 -10.28 16 18 C -0.07 -1.18 4.58 -104.62 -0.48 -1.65 16 19 C -0.07 -1.18 8.83 -39.60 -0.35 -1.53 16 20 C -0.15 -2.18 10.03 -39.52 -0.40 -2.58 16 21 C 0.09 1.24 7.30 -39.42 -0.29 0.95 16 22 F -0.15 -2.04 17.27 2.25 0.04 -2.00 16 23 C -0.15 -2.04 10.03 -39.51 -0.40 -2.43 16 24 C -0.08 -1.18 8.80 -39.59 -0.35 -1.53 16 25 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 26 H 0.03 0.57 6.52 -51.93 -0.34 0.23 16 27 H 0.09 2.16 6.47 -51.93 -0.34 1.82 16 28 H 0.11 2.80 5.65 -51.93 -0.29 2.50 16 29 H 0.03 0.52 5.74 -51.93 -0.30 0.22 16 30 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 31 H 0.06 0.94 7.12 -51.93 -0.37 0.57 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.37 4.33 9.12 45.56 0.42 4.74 16 34 H 0.14 2.37 7.15 -52.48 -0.38 2.00 16 35 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 37 H 0.13 1.65 7.75 -52.49 -0.41 1.24 16 LS Contribution 307.93 15.07 4.64 4.64 Total: -1.00 -31.56 307.93 -6.20 -37.76 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -3.45 Total: 8.83 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -2.17 Total: -5.12 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: 0.15 Total: -33.64 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.39 Total: -26.26 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.56 -6.20 -37.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339256166.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.590 kcal (2) G-P(sol) polarization free energy of solvation -31.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds