Wall clock time and date at job start Tue Mar 31 2020 05:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46495 * 120.00187 * 2 1 4 4 C 1.50693 * 109.47569 * 270.00622 * 3 2 1 5 5 H 1.07993 * 120.00086 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00148 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99877 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00216 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47157 * 89.99767 * 8 6 4 10 10 H 1.48500 * 109.47107 * 209.99506 * 8 6 4 11 11 H 1.48500 * 109.46726 * 329.99430 * 8 6 4 12 12 C 1.34783 * 119.99893 * 180.02562 * 2 1 3 13 13 O 1.21276 * 119.99552 * 183.82163 * 12 2 1 14 14 C 1.50699 * 119.99885 * 3.81559 * 12 2 1 15 15 H 1.08997 * 109.47043 * 313.21872 * 14 12 2 16 16 C 1.53003 * 109.47036 * 73.22090 * 14 12 2 17 17 O 1.42896 * 109.46918 * 185.56129 * 16 14 12 18 18 C 1.50705 * 109.46933 * 193.21729 * 14 12 2 19 19 C 1.38241 * 119.97427 * 119.99964 * 18 14 12 20 20 C 1.38195 * 120.02669 * 179.97438 * 19 18 14 21 21 C 1.38455 * 119.97349 * 0.02562 * 20 19 18 22 22 F 1.35105 * 120.02495 * 180.02562 * 21 20 19 23 23 C 1.38463 * 119.94998 * 0.02562 * 21 20 19 24 24 C 1.38197 * 119.97207 * 359.97438 * 23 21 20 25 25 H 1.09001 * 109.46877 * 264.73014 * 1 2 3 26 26 H 1.09003 * 109.47170 * 24.73304 * 1 2 3 27 27 H 1.09002 * 109.47027 * 144.73079 * 1 2 3 28 28 H 1.09003 * 109.46749 * 30.00405 * 3 2 1 29 29 H 1.09006 * 109.47130 * 150.00111 * 3 2 1 30 30 H 0.96997 * 120.00349 * 179.97438 * 7 6 4 31 31 H 1.09007 * 109.46977 * 305.56090 * 16 14 12 32 32 H 1.08998 * 109.47207 * 65.55591 * 16 14 12 33 33 H 0.96699 * 113.99876 * 179.97438 * 17 16 14 34 34 H 1.08005 * 119.98793 * 0.28070 * 19 18 14 35 35 H 1.08004 * 120.01140 * 180.02562 * 20 19 18 36 36 H 1.08000 * 120.01025 * 179.97438 * 23 21 20 37 37 H 1.08002 * 119.98598 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4207 5 1 2.0980 1.0960 -2.2416 6 6 3.1269 2.8775 -1.6726 7 7 3.5543 3.6175 -0.6729 8 14 3.4388 3.4167 -3.4337 9 1 2.3092 4.2599 -3.9007 10 1 4.6994 4.1992 -3.4960 11 1 3.5558 2.2194 -4.3044 12 6 2.1389 -1.1673 -0.0005 13 8 3.3496 -1.1684 0.0695 14 6 1.3879 -2.4708 -0.0880 15 1 0.5549 -2.4581 0.6149 16 6 0.8531 -2.6570 -1.5093 17 8 0.0332 -3.8262 -1.5604 18 6 2.3154 -3.6088 0.2528 19 6 2.0304 -4.4351 1.3237 20 6 2.8799 -5.4792 1.6368 21 6 4.0171 -5.6971 0.8777 22 9 4.8480 -6.7179 1.1825 23 6 4.3021 -4.8682 -0.1941 24 6 3.4511 -3.8247 -0.5053 25 1 -0.3633 -0.0944 1.0233 26 1 -0.3634 0.9334 -0.4300 27 1 -0.3633 -0.8391 -0.5934 28 1 1.6084 2.0283 0.5139 29 1 3.1500 1.1383 0.5138 30 1 4.0318 4.4430 -0.8500 31 1 0.2618 -1.7859 -1.7920 32 1 1.6887 -2.7686 -2.2002 33 1 -0.3411 -4.0062 -2.4337 34 1 1.1409 -4.2677 1.9130 35 1 2.6567 -6.1249 2.4733 36 1 5.1891 -5.0371 -0.7867 37 1 3.6734 -3.1777 -1.3410 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339256505.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:23 Heat of formation + Delta-G solvation = -101.662063 kcal Electronic energy + Delta-G solvation = -22034.330329 eV Core-core repulsion = 18498.387233 eV Total energy + Delta-G solvation = -3535.943096 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.79474 -40.09650 -38.27555 -36.75532 -34.93277 -33.02724 -32.37643 -31.01265 -28.80938 -27.48585 -25.95438 -24.02005 -23.05360 -22.81768 -21.06467 -18.68758 -17.64560 -17.32795 -16.69283 -16.54530 -15.93556 -15.68557 -15.45702 -15.07608 -14.82198 -14.57663 -14.12374 -13.77573 -13.40083 -13.28058 -13.02371 -12.72504 -12.44773 -12.19027 -12.02974 -11.84443 -11.62483 -11.21454 -11.14685 -10.96474 -10.75303 -10.62036 -10.23345 -9.96969 -9.69507 -9.13999 -8.85932 -8.49795 -8.40034 -7.73428 -6.10343 -4.15964 1.26215 1.40429 3.14690 3.25129 3.32586 3.35687 3.61227 3.92807 4.28848 4.36621 4.42293 4.65773 4.84071 4.97862 5.12725 5.15049 5.22400 5.27170 5.36495 5.44222 5.53167 5.71762 5.78746 5.84925 6.03008 6.10625 6.16948 6.22796 6.38494 6.68084 6.96017 7.02943 7.38048 7.44696 7.52964 7.85263 8.15806 8.29819 8.80876 8.96952 9.49391 10.97717 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.020821 B = 0.004540 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.504166 B = 6165.699005 C = 6608.820126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.599 5.599 3 C 0.244 3.756 4 C -0.529 4.529 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.893 5.893 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.513 3.487 13 O -0.527 6.527 14 C -0.070 4.070 15 H 0.104 0.896 16 C 0.086 3.914 17 O -0.568 6.568 18 C -0.062 4.062 19 C -0.079 4.079 20 C -0.160 4.160 21 C 0.090 3.910 22 F -0.146 7.146 23 C -0.156 4.156 24 C -0.050 4.050 25 H 0.046 0.954 26 H 0.078 0.922 27 H 0.061 0.939 28 H 0.033 0.967 29 H 0.046 0.954 30 H 0.264 0.736 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.380 0.620 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.525 -15.096 0.484 16.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.331 5.331 3 C 0.125 3.875 4 C -0.568 4.568 5 H 0.075 0.925 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.297 3.703 13 O -0.404 6.404 14 C -0.092 4.092 15 H 0.122 0.878 16 C 0.008 3.992 17 O -0.373 6.373 18 C -0.063 4.063 19 C -0.097 4.097 20 C -0.179 4.179 21 C 0.071 3.929 22 F -0.125 7.125 23 C -0.175 4.175 24 C -0.068 4.068 25 H 0.064 0.936 26 H 0.096 0.904 27 H 0.079 0.921 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.227 0.773 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.578 -14.941 1.220 16.371 hybrid contribution 0.128 0.387 -1.457 1.513 sum -6.451 -14.555 -0.237 15.922 Atomic orbital electron populations 1.21844 0.81420 1.03161 1.00569 1.48147 1.06196 1.07659 1.71061 1.19340 0.92700 0.77855 0.97582 1.21398 1.36805 1.06425 0.92148 0.92493 1.24937 0.95288 0.96377 0.97426 1.69928 1.38140 1.14321 1.30763 0.86502 0.77758 0.78618 0.84563 1.20606 1.21043 1.19921 1.19830 0.87908 0.84366 0.78155 1.90695 1.13616 1.86659 1.49389 1.20325 0.97891 0.92412 0.98546 0.87784 1.22149 0.94163 0.87966 0.94897 1.86460 1.68319 1.46114 1.36455 1.19306 0.95569 0.95599 0.95819 1.20810 0.98842 0.93832 0.96252 1.20975 0.94911 1.00619 1.01364 1.17702 0.90319 0.87726 0.97167 1.91466 1.70870 1.57367 1.92787 1.21082 1.01709 0.96596 0.98114 1.20867 0.92296 0.94556 0.99112 0.93556 0.90368 0.92075 0.94894 0.93639 0.92630 0.91813 0.92688 0.77341 0.85302 0.85077 0.84980 0.84912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.10 9.78 59.85 0.59 1.69 16 2 N -0.60 -12.09 2.86 -182.95 -0.52 -12.61 16 3 C 0.24 6.19 5.16 -5.20 -0.03 6.16 16 4 C -0.53 -14.43 9.39 -34.44 -0.32 -14.76 16 5 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 8 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 C 0.51 10.16 6.84 -10.98 -0.08 10.09 16 13 O -0.53 -12.62 14.26 5.56 0.08 -12.54 16 14 C -0.07 -1.05 1.78 -92.92 -0.17 -1.22 16 15 H 0.10 1.37 7.25 -51.93 -0.38 0.99 16 16 C 0.09 1.11 5.96 37.16 0.22 1.33 16 17 O -0.57 -6.33 13.43 -35.23 -0.47 -6.81 16 18 C -0.06 -0.95 4.32 -104.62 -0.45 -1.40 16 19 C -0.08 -1.06 9.67 -39.60 -0.38 -1.45 16 20 C -0.16 -2.08 10.03 -39.52 -0.40 -2.47 16 21 C 0.09 1.28 7.30 -39.42 -0.29 0.99 16 22 F -0.15 -2.06 17.27 2.25 0.04 -2.02 16 23 C -0.16 -2.25 10.03 -39.51 -0.40 -2.65 16 24 C -0.05 -0.79 7.77 -39.59 -0.31 -1.09 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.08 1.19 8.03 -51.93 -0.42 0.77 16 27 H 0.06 0.75 4.63 -51.93 -0.24 0.51 16 28 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 29 H 0.05 1.31 7.37 -51.93 -0.38 0.93 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.06 0.79 5.87 -51.93 -0.30 0.48 16 32 H 0.05 0.73 7.21 -51.93 -0.37 0.36 16 33 H 0.38 2.50 9.12 45.56 0.42 2.92 16 34 H 0.13 1.42 7.94 -52.48 -0.42 1.00 16 35 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 36 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 37 H 0.13 2.15 7.16 -52.49 -0.38 1.78 16 LS Contribution 318.46 15.07 4.80 4.80 Total: -1.00 -33.03 318.46 -6.17 -39.20 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -3.71 Total: 2.22 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -2.10 Total: -3.15 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.21 Total: -37.90 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.39 Total: -19.34 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.03 -6.17 -39.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339256505.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.459 kcal (2) G-P(sol) polarization free energy of solvation -33.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds