Wall clock time and date at job start Tue Mar 31 2020 05:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46507 * 109.46726 * 2 1 4 4 C 1.46500 * 119.99997 * 90.03763 * 3 2 1 5 5 C 1.50698 * 109.47064 * 89.99450 * 4 3 2 6 6 H 1.07994 * 120.00261 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99649 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00569 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99798 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47069 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46721 * 120.00169 * 9 7 5 12 12 H 1.48505 * 109.46790 * 239.99597 * 9 7 5 13 13 C 1.34773 * 119.99967 * 270.02906 * 3 2 1 14 14 O 1.21691 * 120.00303 * 185.66809 * 13 3 2 15 15 C 1.46685 * 119.99888 * 5.67473 * 13 3 2 16 16 C 1.37872 * 126.23275 * 8.20596 * 15 13 3 17 17 C 1.39832 * 107.08488 * 179.97438 * 16 15 13 18 18 C 1.35453 * 107.86534 * 0.02562 * 17 16 15 19 19 N 1.48021 * 125.56622 * 179.97438 * 18 17 16 20 20 O 1.21798 * 119.99972 * 359.97038 * 19 18 17 21 21 O 1.21802 * 120.00505 * 179.97438 * 19 18 17 22 22 N 1.35533 * 108.87417 * 359.76364 * 18 17 16 23 23 C 1.46500 * 125.68211 * 180.23110 * 22 18 17 24 24 H 1.09007 * 109.47255 * 53.35526 * 1 2 3 25 25 H 1.09001 * 109.47171 * 173.35519 * 1 2 3 26 26 H 1.08999 * 109.47173 * 293.35453 * 1 2 3 27 27 H 1.08991 * 109.47182 * 240.00247 * 2 1 3 28 28 H 1.08995 * 109.46660 * 119.99303 * 2 1 3 29 29 H 1.08998 * 109.46745 * 209.99527 * 4 3 2 30 30 H 1.09005 * 109.47009 * 329.99341 * 4 3 2 31 31 H 0.96995 * 120.00537 * 180.02562 * 8 7 5 32 32 H 1.07996 * 126.45440 * 359.96881 * 16 15 13 33 33 H 1.07998 * 126.06720 * 179.97438 * 17 16 15 34 34 H 1.09005 * 109.47155 * 264.76105 * 23 22 18 35 35 H 1.08999 * 109.47160 * 24.76408 * 23 22 18 36 36 H 1.09000 * 109.47085 * 144.76436 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2632 2.0717 1.2687 5 6 3.6867 1.8347 1.7029 6 1 4.3432 1.2301 1.0949 7 6 4.1506 2.3891 2.8770 8 7 3.3511 3.1251 3.6177 9 14 5.9154 2.0961 3.4148 10 1 6.6025 1.2411 2.4138 11 1 6.6223 3.3975 3.5236 12 1 5.9241 1.4162 4.7351 13 6 2.2423 2.0168 -1.1672 14 8 2.7445 3.1253 -1.1699 15 6 1.8806 1.3725 -2.4343 16 6 1.1674 0.2014 -2.5786 17 6 1.0524 -0.0432 -3.9505 18 6 1.6840 0.9600 -4.6058 19 7 1.8009 1.0886 -6.0758 20 8 1.3045 0.2464 -6.8022 21 8 2.3936 2.0366 -6.5591 22 7 2.1873 1.8294 -3.6961 23 6 2.9359 3.0505 -4.0041 24 1 -0.3634 0.6134 -0.8246 25 1 -0.3633 -1.0208 -0.1189 26 1 -0.3633 0.4074 0.9435 27 1 1.8933 -0.5137 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 2.0961 3.1409 1.1386 30 1 1.5828 1.6874 2.0287 31 1 3.6776 3.5154 4.4435 32 1 0.7720 -0.4114 -1.7821 33 1 0.5501 -0.8834 -4.4067 34 1 4.0049 2.8408 -3.9659 35 1 2.6692 3.3981 -5.0022 36 1 2.6905 3.8212 -3.2733 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343884602.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:31 Heat of formation + Delta-G solvation = 41.701285 kcal Electronic energy + Delta-G solvation = -22348.448988 eV Core-core repulsion = 18838.642555 eV Total energy + Delta-G solvation = -3509.806433 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.67153 -41.46686 -38.88425 -36.78833 -36.04283 -33.38969 -32.82029 -31.01515 -30.33101 -27.80257 -26.85349 -25.98848 -23.35952 -23.26348 -21.74153 -21.27151 -19.18745 -18.74202 -18.53237 -17.84003 -16.78733 -16.53000 -15.91427 -15.69627 -14.89292 -14.70161 -14.33692 -14.21643 -13.69939 -13.38830 -12.80196 -12.69076 -12.42275 -12.21681 -11.99743 -11.84146 -11.63254 -11.38561 -11.34027 -11.24942 -11.04696 -10.89169 -10.66612 -10.26612 -9.80351 -9.49766 -9.26799 -8.93445 -8.56692 -7.97103 -6.17917 -4.23278 -0.06756 0.91286 1.40677 2.21338 2.36009 3.21833 3.29897 3.32763 3.47367 3.58304 4.33092 4.44878 4.53762 4.61056 5.05694 5.12464 5.16237 5.17547 5.33913 5.37861 5.49839 5.56533 5.60846 5.80370 5.88122 6.06462 6.06885 6.32249 6.35742 6.57254 6.81551 7.17802 7.27400 7.53250 7.77135 8.02822 8.05838 8.55553 8.81805 9.42383 10.90281 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.025729 B = 0.004512 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.998888 B = 6203.525195 C = 6798.358281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.079 3.921 3 N -0.569 5.569 4 C 0.248 3.752 5 C -0.530 4.530 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 C 0.567 3.433 14 O -0.531 6.531 15 C 0.055 3.945 16 C -0.186 4.186 17 C -0.094 4.094 18 C 0.049 3.951 19 N 0.065 4.935 20 O -0.145 6.145 21 O -0.181 6.181 22 N -0.382 5.382 23 C 0.047 3.953 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.046 0.954 30 H 0.040 0.960 31 H 0.264 0.736 32 H 0.198 0.802 33 H 0.169 0.831 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.282 -7.280 -11.591 15.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.044 4.044 3 N -0.300 5.300 4 C 0.130 3.870 5 C -0.569 4.569 6 H 0.078 0.922 7 C -0.139 4.139 8 N -0.532 5.532 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.208 1.208 13 C 0.352 3.648 14 O -0.409 6.409 15 C -0.067 4.067 16 C -0.210 4.210 17 C -0.122 4.122 18 C -0.147 4.147 19 N 0.580 4.420 20 O -0.360 6.360 21 O -0.389 6.389 22 N -0.057 5.057 23 C -0.093 4.093 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.105 0.895 28 H 0.108 0.892 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.214 0.786 33 H 0.187 0.813 34 H 0.107 0.893 35 H 0.124 0.876 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.833 -6.248 -10.845 13.809 hybrid contribution 1.073 -0.040 -0.071 1.076 sum -4.760 -6.288 -10.916 13.467 Atomic orbital electron populations 1.22429 0.96246 1.02098 1.03364 1.22178 0.93934 0.84032 1.04303 1.48039 1.61940 1.13283 1.06703 1.19441 0.96890 0.93563 0.77133 1.21410 0.96643 1.32346 1.06454 0.92250 1.24920 0.97986 0.94746 0.96262 1.69925 1.35694 1.33205 1.14332 0.86425 0.84378 0.78136 0.78391 1.19792 1.20804 1.20838 1.16775 0.80473 0.85596 0.81982 1.90813 1.43599 1.19912 1.86555 1.21214 1.03326 0.96997 0.85122 1.22816 1.04023 0.97661 0.96513 1.20895 1.00214 0.97837 0.93303 1.20810 1.15701 0.99608 0.78618 1.42531 0.98367 0.99781 1.01357 1.94557 1.48585 1.36485 1.56372 1.94514 1.42482 1.23910 1.78015 1.43766 1.39284 1.18987 1.03708 1.22814 0.96989 0.84211 1.05272 0.91909 0.91312 0.91392 0.89490 0.89153 0.93642 0.94173 0.92594 0.78553 0.81321 0.89347 0.87625 0.86630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 8.58 37.16 0.32 -1.71 16 2 C 0.08 1.10 5.58 -4.04 -0.02 1.08 16 3 N -0.57 -10.93 2.46 -176.60 -0.43 -11.36 16 4 C 0.25 5.96 5.12 -5.19 -0.03 5.93 16 5 C -0.53 -14.14 9.39 -34.44 -0.32 -14.47 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -25.28 13.29 55.43 0.74 -24.54 16 9 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 C 0.57 11.03 7.62 -12.85 -0.10 10.93 16 14 O -0.53 -12.17 14.41 5.20 0.07 -12.10 16 15 C 0.06 0.87 6.71 -81.97 -0.55 0.32 16 16 C -0.19 -2.26 7.53 -39.12 -0.29 -2.56 16 17 C -0.09 -1.09 10.46 -39.98 -0.42 -1.51 16 18 C 0.05 0.68 7.87 -144.06 -1.13 -0.45 16 19 N 0.06 0.94 4.45 33.00 0.15 1.08 16 20 O -0.14 -2.06 19.00 -29.46 -0.56 -2.62 16 21 O -0.18 -2.70 16.57 -29.46 -0.49 -3.19 16 22 N -0.38 -5.73 3.16 -116.61 -0.37 -6.10 16 23 C 0.05 0.64 10.09 59.85 0.60 1.25 16 24 H 0.06 0.70 6.61 -51.92 -0.34 0.36 16 25 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.09 1.04 4.78 -51.93 -0.25 0.79 16 28 H 0.09 1.30 8.07 -51.93 -0.42 0.88 16 29 H 0.05 1.24 7.51 -51.93 -0.39 0.85 16 30 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 31 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 32 H 0.20 1.93 3.17 -52.49 -0.17 1.76 16 33 H 0.17 1.45 8.06 -52.49 -0.42 1.02 16 34 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.11 1.30 5.92 -51.93 -0.31 0.99 16 36 H 0.12 1.71 6.48 -51.93 -0.34 1.38 16 LS Contribution 307.82 15.07 4.64 4.64 Total: -1.00 -31.01 307.82 -7.18 -38.20 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -3.87 Total: -0.44 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -2.04 Total: 0.44 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: 0.08 Total: -40.93 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.97 Total: -17.90 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.01 -7.18 -38.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343884602.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.898 kcal (2) G-P(sol) polarization free energy of solvation -31.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds