Wall clock time and date at job start Tue Mar 31 2020 05:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46507 * 109.46726 * 2 1 4 4 C 1.46500 * 119.99997 * 90.03763 * 3 2 1 5 5 C 1.50698 * 109.47064 * 89.99450 * 4 3 2 6 6 H 1.07994 * 120.00261 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99649 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00569 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99798 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47069 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46721 * 120.00169 * 9 7 5 12 12 H 1.48505 * 109.46790 * 239.99597 * 9 7 5 13 13 C 1.34773 * 119.99967 * 270.02906 * 3 2 1 14 14 O 1.21691 * 120.00303 * 185.66809 * 13 3 2 15 15 C 1.46685 * 119.99888 * 5.67473 * 13 3 2 16 16 C 1.37872 * 126.23275 * 8.20596 * 15 13 3 17 17 C 1.39832 * 107.08488 * 179.97438 * 16 15 13 18 18 C 1.35453 * 107.86534 * 0.02562 * 17 16 15 19 19 N 1.48021 * 125.56622 * 179.97438 * 18 17 16 20 20 O 1.21798 * 119.99972 * 359.97038 * 19 18 17 21 21 O 1.21802 * 120.00505 * 179.97438 * 19 18 17 22 22 N 1.35533 * 108.87417 * 359.76364 * 18 17 16 23 23 C 1.46500 * 125.68211 * 180.23110 * 22 18 17 24 24 H 1.09007 * 109.47255 * 53.35526 * 1 2 3 25 25 H 1.09001 * 109.47171 * 173.35519 * 1 2 3 26 26 H 1.08999 * 109.47173 * 293.35453 * 1 2 3 27 27 H 1.08991 * 109.47182 * 240.00247 * 2 1 3 28 28 H 1.08995 * 109.46660 * 119.99303 * 2 1 3 29 29 H 1.08998 * 109.46745 * 209.99527 * 4 3 2 30 30 H 1.09005 * 109.47009 * 329.99341 * 4 3 2 31 31 H 0.96995 * 120.00537 * 180.02562 * 8 7 5 32 32 H 1.07996 * 126.45440 * 359.96881 * 16 15 13 33 33 H 1.07998 * 126.06720 * 179.97438 * 17 16 15 34 34 H 1.09005 * 109.47155 * 264.76105 * 23 22 18 35 35 H 1.08999 * 109.47160 * 24.76408 * 23 22 18 36 36 H 1.09000 * 109.47085 * 144.76436 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2632 2.0717 1.2687 5 6 3.6867 1.8347 1.7029 6 1 4.3432 1.2301 1.0949 7 6 4.1506 2.3891 2.8770 8 7 3.3511 3.1251 3.6177 9 14 5.9154 2.0961 3.4148 10 1 6.6025 1.2411 2.4138 11 1 6.6223 3.3975 3.5236 12 1 5.9241 1.4162 4.7351 13 6 2.2423 2.0168 -1.1672 14 8 2.7445 3.1253 -1.1699 15 6 1.8806 1.3725 -2.4343 16 6 1.1674 0.2014 -2.5786 17 6 1.0524 -0.0432 -3.9505 18 6 1.6840 0.9600 -4.6058 19 7 1.8009 1.0886 -6.0758 20 8 1.3045 0.2464 -6.8022 21 8 2.3936 2.0366 -6.5591 22 7 2.1873 1.8294 -3.6961 23 6 2.9359 3.0505 -4.0041 24 1 -0.3634 0.6134 -0.8246 25 1 -0.3633 -1.0208 -0.1189 26 1 -0.3633 0.4074 0.9435 27 1 1.8933 -0.5137 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 2.0961 3.1409 1.1386 30 1 1.5828 1.6874 2.0287 31 1 3.6776 3.5154 4.4435 32 1 0.7720 -0.4114 -1.7821 33 1 0.5501 -0.8834 -4.4067 34 1 4.0049 2.8408 -3.9659 35 1 2.6692 3.3981 -5.0022 36 1 2.6905 3.8212 -3.2733 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343884602.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:30 Heat of formation + Delta-G solvation = 24.146146 kcal Electronic energy + Delta-G solvation = -22349.210236 eV Core-core repulsion = 18838.642555 eV Total energy + Delta-G solvation = -3510.567681 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.77774 -42.61155 -40.35142 -37.91131 -37.47124 -35.14893 -34.16143 -32.39273 -31.49797 -29.46585 -27.97101 -27.38071 -25.06158 -24.45548 -22.91970 -22.46214 -20.47228 -19.83488 -19.71304 -18.95303 -18.67105 -18.01182 -17.42124 -16.90913 -16.54886 -15.91670 -15.78696 -15.49782 -15.01907 -14.58259 -14.36585 -13.84670 -13.69754 -13.64434 -13.35193 -13.09408 -13.02018 -12.73941 -12.71435 -12.50840 -12.45239 -12.34888 -12.22500 -11.88981 -11.73092 -11.03148 -10.66586 -10.33481 -10.09049 -9.58078 -8.25539 -6.39254 -1.18990 -0.18208 0.23416 1.19401 1.23367 1.35937 1.38456 1.49434 2.05128 2.16627 2.38529 3.05322 3.24368 3.46265 3.56336 4.03971 4.04875 4.09819 4.28173 4.34233 4.47704 4.56287 4.66301 4.76309 4.88736 4.99119 5.02280 5.07358 5.17389 5.30686 5.45042 5.47170 5.51199 5.75006 6.00664 6.40882 6.50910 6.68673 7.07328 7.32237 8.81853 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.025729 B = 0.004512 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.998888 B = 6203.525195 C = 6798.358281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.070 3.930 3 N -0.574 5.574 4 C 0.264 3.736 5 C -0.542 4.542 6 H 0.053 0.947 7 C 0.013 3.987 8 N -0.925 5.925 9 Si 0.963 3.037 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.561 3.439 14 O -0.582 6.582 15 C 0.027 3.973 16 C -0.156 4.156 17 C -0.073 4.073 18 C 0.042 3.958 19 N 0.063 4.937 20 O -0.123 6.123 21 O -0.209 6.209 22 N -0.395 5.395 23 C 0.050 3.950 24 H 0.064 0.936 25 H 0.114 0.886 26 H 0.050 0.950 27 H 0.115 0.885 28 H 0.085 0.915 29 H 0.002 0.998 30 H 0.037 0.963 31 H 0.268 0.732 32 H 0.225 0.775 33 H 0.211 0.789 34 H 0.088 0.912 35 H 0.118 0.882 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.010 -10.275 -12.616 17.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.051 4.051 3 N -0.304 5.304 4 C 0.144 3.856 5 C -0.581 4.581 6 H 0.071 0.929 7 C -0.186 4.186 8 N -0.565 5.565 9 Si 0.788 3.212 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.194 1.194 13 C 0.348 3.652 14 O -0.464 6.464 15 C -0.094 4.094 16 C -0.180 4.180 17 C -0.101 4.101 18 C -0.154 4.154 19 N 0.577 4.423 20 O -0.345 6.345 21 O -0.410 6.410 22 N -0.071 5.071 23 C -0.090 4.090 24 H 0.083 0.917 25 H 0.132 0.868 26 H 0.069 0.931 27 H 0.133 0.867 28 H 0.103 0.897 29 H 0.021 0.979 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.241 0.759 33 H 0.228 0.772 34 H 0.106 0.894 35 H 0.136 0.864 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.549 -9.230 -11.875 16.404 hybrid contribution 1.222 0.822 0.180 1.483 sum -5.327 -8.409 -11.695 15.358 Atomic orbital electron populations 1.22399 0.93572 1.04857 1.02633 1.22583 0.96102 0.81012 1.05417 1.47984 1.62080 1.15148 1.05163 1.18878 0.95737 0.91681 0.79348 1.21677 0.97781 1.32137 1.06489 0.92918 1.25755 1.02014 0.94456 0.96410 1.70028 1.37562 1.34073 1.14818 0.85429 0.79379 0.77915 0.78445 1.19375 1.20967 1.19366 1.17260 0.79486 0.85112 0.83301 1.90778 1.45896 1.22186 1.87508 1.20708 1.06167 0.98681 0.83797 1.23120 1.01573 0.95714 0.97595 1.21430 0.98496 0.97698 0.92484 1.21161 1.15969 1.00038 0.78274 1.42615 0.98305 0.99723 1.01638 1.94536 1.47486 1.35930 1.56537 1.94532 1.43698 1.24517 1.78246 1.43818 1.39972 1.19483 1.03851 1.22735 0.97050 0.83973 1.05221 0.91713 0.86758 0.93054 0.86739 0.89672 0.97949 0.94506 0.92334 0.75901 0.77237 0.89359 0.86417 0.88477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.36 8.58 71.98 0.62 -2.75 16 2 C 0.07 1.81 5.58 86.38 0.48 2.29 16 3 N -0.57 -22.35 2.46 -830.87 -2.04 -24.39 16 4 C 0.26 13.25 5.12 85.63 0.44 13.69 16 5 C -0.54 -29.72 9.39 25.60 0.24 -29.48 16 6 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 7 C 0.01 0.73 5.46 84.65 0.46 1.19 16 8 N -0.93 -53.66 13.29 21.45 0.28 -53.37 16 9 Si 0.96 43.47 29.54 68.60 2.03 45.49 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 13 C 0.56 22.37 7.62 86.45 0.66 23.03 16 14 O -0.58 -28.34 14.41 -4.32 -0.06 -28.41 16 15 C 0.03 0.81 6.71 40.35 0.27 1.08 16 16 C -0.16 -3.19 7.53 22.57 0.17 -3.02 16 17 C -0.07 -1.35 10.46 22.01 0.23 -1.12 16 18 C 0.04 1.05 7.87 127.91 1.01 2.06 16 19 N 0.06 1.67 4.45 -49.52 -0.22 1.45 16 20 O -0.12 -3.10 19.00 18.89 0.36 -2.74 16 21 O -0.21 -6.03 16.57 18.88 0.31 -5.72 16 22 N -0.40 -11.55 3.16 -522.85 -1.65 -13.21 16 23 C 0.05 1.42 10.09 127.77 1.29 2.71 16 24 H 0.06 1.23 6.61 -2.38 -0.02 1.22 16 25 H 0.11 1.19 8.13 -2.39 -0.02 1.17 16 26 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.12 2.32 4.78 -2.39 -0.01 2.31 16 28 H 0.08 2.31 8.07 -2.39 -0.02 2.29 16 29 H 0.00 0.14 7.51 -2.39 -0.02 0.12 16 30 H 0.04 1.85 8.07 -2.38 -0.02 1.83 16 31 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 32 H 0.23 3.24 3.17 -2.91 -0.01 3.23 16 33 H 0.21 2.18 8.06 -2.91 -0.02 2.16 16 34 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 35 H 0.12 2.97 5.92 -2.39 -0.01 2.95 16 36 H 0.10 3.12 6.48 -2.39 -0.02 3.10 16 Total: -1.00 -70.59 307.82 6.00 -64.60 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: 1.12 Total: 6.60 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 5.87 Total: 9.69 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -3.63 Total: -89.52 kcal Atomic # 8 Polarization: -37.48 SS G_CDS: 0.61 Total: -36.87 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -70.59 6.00 -64.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343884602.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.743 kcal (2) G-P(sol) polarization free energy of solvation -70.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds