Wall clock time and date at job start Tue Mar 31 2020 05:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 O 1.42103 * 109.47287 * 2 1 4 4 C 1.76202 * 103.00197 * 250.94447 * 2 1 3 5 5 C 1.38235 * 120.00249 * 89.99703 * 4 2 1 6 6 C 1.38234 * 120.00220 * 179.97438 * 5 4 2 7 7 C 1.38233 * 120.00037 * 0.28719 * 6 5 4 8 8 C 1.50693 * 120.00207 * 179.72405 * 7 6 5 9 9 N 1.46901 * 109.47201 * 89.99355 * 8 7 6 10 10 C 1.46900 * 110.99924 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.46977 * 179.97438 * 10 9 8 12 12 C 1.53007 * 109.46948 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46804 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00289 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99818 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99736 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00199 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47328 * 89.99283 * 17 15 13 19 19 H 1.48494 * 109.47444 * 209.99712 * 17 15 13 20 20 H 1.48505 * 109.46991 * 330.00014 * 17 15 13 21 21 C 1.38238 * 119.99742 * 359.52139 * 7 6 5 22 22 C 1.38233 * 120.00121 * 0.41161 * 21 7 6 23 23 H 1.08997 * 109.47616 * 169.05251 * 1 2 3 24 24 H 1.09000 * 109.47499 * 289.05607 * 1 2 3 25 25 H 1.09008 * 109.47248 * 49.05865 * 1 2 3 26 26 H 1.07999 * 119.99770 * 359.97438 * 5 4 2 27 27 H 1.08002 * 119.99744 * 180.02562 * 6 5 4 28 28 H 1.09000 * 109.47097 * 209.99342 * 8 7 6 29 29 H 1.09001 * 109.47081 * 329.99847 * 8 7 6 30 30 H 1.00894 * 111.00648 * 303.95689 * 9 8 7 31 31 H 1.08993 * 109.47637 * 300.00269 * 10 9 8 32 32 H 1.09001 * 109.46926 * 60.00690 * 10 9 8 33 33 H 1.08998 * 109.47157 * 300.00094 * 11 10 9 34 34 H 1.08993 * 109.46976 * 60.00569 * 11 10 9 35 35 H 1.08998 * 109.47045 * 299.99888 * 12 11 10 36 36 H 1.08993 * 109.47041 * 60.00335 * 12 11 10 37 37 H 0.97006 * 119.99650 * 180.02562 * 16 15 13 38 38 H 1.08004 * 120.00362 * 180.23482 * 21 7 6 39 39 H 1.08002 * 120.00315 * 179.82598 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2104 -0.5605 -1.6228 5 6 2.3658 0.3511 -2.6502 6 6 2.6773 -0.0886 -3.9232 7 6 2.8276 -1.4404 -4.1701 8 6 3.1611 -1.9202 -5.5591 9 7 4.6201 -1.9790 -5.7198 10 6 4.9832 -2.4444 -7.0649 11 6 6.5070 -2.4917 -7.1941 12 6 6.8853 -2.9759 -8.5954 13 6 8.3862 -3.0231 -8.7224 14 1 9.0081 -2.7361 -7.8874 15 6 8.9655 -3.4317 -9.9050 16 7 8.2081 -3.7807 -10.9220 17 14 10.8258 -3.4909 -10.0623 18 1 11.3153 -4.8304 -9.6482 19 1 11.2117 -3.2375 -11.4737 20 1 11.4297 -2.4520 -9.1898 21 6 2.6760 -2.3518 -3.1418 22 6 2.3659 -1.9120 -1.8685 23 1 -0.3634 -1.0089 -0.1952 24 1 -0.3634 0.3355 0.9713 25 1 -0.3634 0.6735 -0.7763 26 1 2.2439 1.4069 -2.4584 27 1 2.7992 0.6237 -4.7258 28 1 2.7384 -2.9133 -5.7117 29 1 2.7424 -1.2305 -6.2920 30 1 5.0422 -1.0846 -5.5200 31 1 4.5733 -3.4411 -7.2276 32 1 4.5771 -1.7587 -7.8086 33 1 6.9166 -1.4948 -7.0317 34 1 6.9135 -3.1771 -6.4505 35 1 6.4757 -3.9728 -8.7582 36 1 6.4788 -2.2901 -9.3387 37 1 8.6157 -4.0685 -11.7539 38 1 2.7971 -3.4077 -3.3337 39 1 2.2447 -2.6242 -1.0657 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344252157.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:41 Heat of formation + Delta-G solvation = -29.222062 kcal Electronic energy + Delta-G solvation = -18341.518483 eV Core-core repulsion = 15374.929797 eV Total energy + Delta-G solvation = -2966.588686 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.52984 -36.44231 -36.01972 -33.76800 -32.18089 -31.17754 -30.40874 -29.16360 -26.84010 -24.75162 -22.99457 -22.30476 -21.52479 -20.10102 -18.40852 -16.94267 -16.36556 -16.02934 -15.57675 -15.16564 -15.08062 -14.66937 -14.38266 -14.24144 -14.02110 -13.65941 -13.55960 -13.05820 -12.81513 -12.73868 -12.28544 -12.09646 -11.80834 -11.49932 -11.41300 -11.23925 -10.83514 -10.59268 -10.55035 -10.47457 -9.70955 -9.47591 -9.23459 -9.15461 -9.04344 -8.69250 -8.34170 -8.24813 -5.99271 -4.01271 0.63657 1.18350 1.57694 2.37301 3.32953 3.36176 3.38909 3.42821 3.63186 4.40879 4.50023 4.56343 4.74692 4.76907 4.79379 4.87174 5.13989 5.17144 5.36564 5.43805 5.46652 5.56776 5.65960 5.76458 5.80990 5.88424 6.02464 6.05443 6.28429 6.39465 6.68316 6.70785 6.73862 7.12066 7.24978 7.53383 7.68535 7.82972 8.00980 8.44295 9.05855 9.62676 11.12162 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.042653 B = 0.002247 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.305100 B =12459.116569 C =12736.223161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.499 4.499 2 S 1.332 4.668 3 O -0.859 6.859 4 C -0.466 4.466 5 C -0.054 4.054 6 C -0.131 4.131 7 C -0.038 4.038 8 C 0.089 3.911 9 N -0.685 5.685 10 C 0.059 3.941 11 C -0.107 4.107 12 C 0.022 3.978 13 C -0.519 4.519 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.115 4.115 22 C -0.046 4.046 23 H 0.110 0.890 24 H 0.104 0.896 25 H 0.080 0.920 26 H 0.124 0.876 27 H 0.122 0.878 28 H 0.083 0.917 29 H 0.038 0.962 30 H 0.339 0.661 31 H 0.069 0.931 32 H 0.025 0.975 33 H 0.045 0.955 34 H 0.057 0.943 35 H 0.016 0.984 36 H 0.013 0.987 37 H 0.260 0.740 38 H 0.131 0.869 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.050 3.067 22.652 29.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 1.529 4.471 3 O -0.855 6.855 4 C -0.563 4.563 5 C -0.073 4.073 6 C -0.150 4.150 7 C -0.039 4.039 8 C -0.040 4.040 9 N -0.316 5.316 10 C -0.070 4.070 11 C -0.145 4.145 12 C -0.016 4.016 13 C -0.557 4.557 14 H 0.074 0.926 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.135 4.135 22 C -0.065 4.065 23 H 0.129 0.871 24 H 0.123 0.877 25 H 0.099 0.901 26 H 0.142 0.858 27 H 0.140 0.860 28 H 0.101 0.899 29 H 0.056 0.944 30 H 0.157 0.843 31 H 0.087 0.913 32 H 0.043 0.957 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.035 0.965 36 H 0.032 0.968 37 H 0.070 0.930 38 H 0.149 0.851 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -17.387 2.658 23.464 29.324 hybrid contribution -0.088 2.013 -2.629 3.313 sum -17.475 4.672 20.834 27.591 Atomic orbital electron populations 1.27778 1.22731 1.07890 1.07150 1.69440 0.85799 0.99531 0.92333 1.93110 1.73102 1.37285 1.82006 1.27556 1.13049 0.99767 1.15921 1.21040 0.94674 0.99289 0.92302 1.21180 1.01262 0.95437 0.97165 1.20118 0.94618 0.93234 0.95924 1.20994 0.90357 1.01098 0.91548 1.60609 1.06708 1.34240 1.30014 1.22172 0.98721 0.99571 0.86496 1.21629 0.91243 1.00638 1.00990 1.19068 0.96241 0.96337 0.89913 1.21256 0.92024 1.44165 0.98256 0.92650 1.25040 0.98156 0.95466 0.95938 1.69968 1.34938 1.45354 1.03362 0.86581 0.85767 0.78410 0.77174 1.20628 1.21267 1.19883 1.21197 0.99720 1.00076 0.92496 1.20835 0.95208 0.93431 0.97041 0.87086 0.87746 0.90108 0.85805 0.85997 0.89882 0.94392 0.84302 0.91281 0.95653 0.93643 0.92460 0.96548 0.96816 0.93042 0.85063 0.84611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -2.61 10.70 101.05 1.08 -1.52 16 2 S 1.33 8.58 14.19 -107.50 -1.53 7.06 16 3 O -0.86 -11.49 16.90 -35.23 -0.60 -12.09 16 4 C -0.47 -4.23 5.61 -39.58 -0.22 -4.45 16 5 C -0.05 -0.62 9.44 -39.58 -0.37 -1.00 16 6 C -0.13 -1.50 9.70 -39.58 -0.38 -1.88 16 7 C -0.04 -0.43 5.39 -104.63 -0.56 -1.00 16 8 C 0.09 1.07 5.81 -4.98 -0.03 1.05 16 9 N -0.68 -10.02 6.49 -115.06 -0.75 -10.77 16 10 C 0.06 1.01 5.69 -3.82 -0.02 0.98 16 11 C -0.11 -2.24 5.41 -26.73 -0.14 -2.38 16 12 C 0.02 0.57 4.97 -27.88 -0.14 0.44 16 13 C -0.52 -14.92 9.11 -34.44 -0.31 -15.24 16 14 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 15 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 17 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 C -0.12 -1.12 9.70 -39.58 -0.38 -1.50 16 22 C -0.05 -0.35 9.75 -39.58 -0.39 -0.74 16 23 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.10 0.42 8.14 -51.92 -0.42 0.00 16 25 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 26 H 0.12 1.51 7.45 -52.49 -0.39 1.12 16 27 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 28 H 0.08 0.95 8.09 -51.93 -0.42 0.53 16 29 H 0.04 0.45 8.09 -51.93 -0.42 0.03 16 30 H 0.34 4.86 8.72 -39.29 -0.34 4.52 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 39 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 LS Contribution 344.33 15.07 5.19 5.19 Total: -1.00 -36.78 344.33 -10.13 -46.91 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -6.19 Total: -0.97 kcal Atomic # 6 Polarization: -23.77 SS G_CDS: -1.98 Total: -25.75 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: -0.01 Total: -37.25 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: -0.60 Total: -12.09 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 8.58 SS G_CDS: -1.53 Total: 7.06 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -36.78 -10.13 -46.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344252157.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.688 kcal (2) G-P(sol) polarization free energy of solvation -36.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds