Wall clock time and date at job start Tue Mar 31 2020 05:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46502 * 109.46661 * 2 1 4 4 C 1.37101 * 119.99522 * 262.84277 * 3 2 1 5 5 H 1.07998 * 119.99801 * 194.25475 * 4 3 2 6 6 C 1.38946 * 120.00150 * 14.26136 * 4 3 2 7 7 N 1.31415 * 120.00229 * 19.55237 * 6 4 3 8 8 Si 1.86802 * 119.99931 * 199.55006 * 6 4 3 9 9 H 1.48494 * 109.47254 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46795 * 120.00146 * 8 6 4 11 11 H 1.48498 * 109.47202 * 239.99933 * 8 6 4 12 12 C 1.34772 * 120.00338 * 82.84315 * 3 2 1 13 13 O 1.21293 * 119.99880 * 6.01574 * 12 3 2 14 14 C 1.50705 * 120.00015 * 186.00799 * 12 3 2 15 15 H 1.09000 * 109.46670 * 48.04000 * 14 12 3 16 16 C 1.52996 * 109.47204 * 288.03895 * 14 12 3 17 17 O 1.42904 * 109.46844 * 168.03979 * 14 12 3 18 18 C 1.35958 * 116.99833 * 205.71359 * 17 14 12 19 19 C 1.38660 * 120.05945 * 354.79612 * 18 17 14 20 20 C 1.38182 * 119.96886 * 179.97438 * 19 18 17 21 21 C 1.38263 * 120.09267 * 0.02562 * 20 19 18 22 22 C 1.38261 * 120.12662 * 359.97412 * 21 20 19 23 23 C 1.38333 * 120.02751 * 0.25920 * 22 21 20 24 24 F 1.35102 * 120.04366 * 179.72305 * 23 22 21 25 25 H 1.09001 * 109.47554 * 298.94545 * 1 2 3 26 26 H 1.08999 * 109.46777 * 58.95437 * 1 2 3 27 27 H 1.08998 * 109.46587 * 178.95026 * 1 2 3 28 28 H 1.08996 * 109.47457 * 239.99868 * 2 1 3 29 29 H 1.08995 * 109.46733 * 119.99124 * 2 1 3 30 30 H 0.97003 * 120.00493 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.47377 * 293.98719 * 16 14 12 32 32 H 1.08999 * 109.47103 * 53.98625 * 16 14 12 33 33 H 1.08998 * 109.47344 * 173.98380 * 16 14 12 34 34 H 1.08004 * 120.02009 * 359.95864 * 19 18 17 35 35 H 1.08000 * 119.95522 * 180.02562 * 20 19 18 36 36 H 1.08006 * 119.93986 * 180.02562 * 21 20 19 37 37 H 1.07995 * 119.98361 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3862 1.9782 -1.1781 5 1 2.9549 2.8962 -1.1638 6 6 2.0272 1.4022 -2.3906 7 7 1.0414 0.5346 -2.4396 8 14 2.9459 1.8612 -3.9510 9 1 4.0048 2.8511 -3.6289 10 1 3.5667 0.6454 -4.5356 11 1 1.9967 2.4514 -4.9287 12 6 2.1058 2.0651 1.1580 13 8 1.8853 1.5052 2.2111 14 6 2.4777 3.5255 1.1445 15 1 1.8750 4.0470 0.4009 16 6 3.9597 3.6711 0.7931 17 8 2.2364 4.0904 2.4347 18 6 1.9933 5.4271 2.4876 19 6 2.0934 6.1972 1.3388 20 6 1.8454 7.5554 1.3946 21 6 1.4981 8.1480 2.5945 22 6 1.3971 7.3839 3.7423 23 6 1.6490 6.0245 3.6933 24 9 1.5559 5.2785 4.8158 25 1 -0.3634 0.4974 0.8993 26 1 -0.3633 0.5300 -0.8805 27 1 -0.3632 -1.0275 -0.0188 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 0.7910 0.1322 -3.2859 31 1 4.5661 3.2426 1.5910 32 1 4.1649 3.1473 -0.1405 33 1 4.2039 4.7272 0.6784 34 1 2.3653 5.7357 0.4009 35 1 1.9230 8.1550 0.4996 36 1 1.3044 9.2098 2.6352 37 1 1.1261 7.8492 4.6784 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346493594.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:20 Heat of formation + Delta-G solvation = -72.960283 kcal Electronic energy + Delta-G solvation = -22483.528491 eV Core-core repulsion = 18948.829998 eV Total energy + Delta-G solvation = -3534.698494 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.52376 -40.08750 -38.60302 -37.04988 -35.01719 -32.05274 -31.56899 -30.58400 -29.68162 -28.98067 -25.18230 -24.10555 -23.00831 -22.35080 -21.25925 -19.19475 -18.27813 -17.60481 -16.72985 -16.16948 -15.84698 -15.67060 -14.94765 -14.77588 -14.45400 -14.34190 -14.14084 -13.62866 -13.42168 -12.78228 -12.74598 -12.50073 -12.22108 -12.14619 -11.77842 -11.66656 -11.41691 -11.23954 -11.16604 -10.96255 -10.74765 -10.47322 -10.43963 -10.22437 -9.73634 -9.04900 -8.88125 -8.43569 -7.97462 -7.85711 -6.48636 -4.04984 1.18900 1.36436 2.98608 3.11383 3.13791 3.23450 3.66376 3.74908 3.96696 4.37692 4.70278 4.82257 4.89189 4.96142 5.18683 5.25552 5.46060 5.52957 5.60083 5.78488 6.01650 6.08257 6.12853 6.20233 6.26986 6.42881 6.51366 6.53404 6.70524 6.77632 6.80421 6.98747 7.20575 7.32036 7.61526 7.64446 7.74728 8.31571 8.93313 9.38735 9.79697 10.47958 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.020214 B = 0.005448 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.837014 B = 5138.493310 C = 6000.093861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.139 3.861 3 N -0.433 5.433 4 C -0.350 4.350 5 H 0.106 0.894 6 C 0.039 3.961 7 N -0.852 5.852 8 Si 0.918 3.082 9 H -0.268 1.268 10 H -0.278 1.278 11 H -0.281 1.281 12 C 0.459 3.541 13 O -0.587 6.587 14 C 0.081 3.919 15 H 0.094 0.906 16 C -0.180 4.180 17 O -0.279 6.279 18 C 0.112 3.888 19 C -0.188 4.188 20 C -0.089 4.089 21 C -0.142 4.142 22 C -0.119 4.119 23 C 0.061 3.939 24 F -0.133 7.133 25 H 0.025 0.975 26 H 0.091 0.909 27 H 0.035 0.965 28 H 0.093 0.907 29 H 0.038 0.962 30 H 0.269 0.731 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.058 0.942 34 H 0.143 0.857 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.068 11.530 1.961 11.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.017 3.983 3 N -0.152 5.152 4 C -0.477 4.477 5 H 0.123 0.877 6 C -0.166 4.166 7 N -0.490 5.490 8 Si 0.744 3.256 9 H -0.192 1.192 10 H -0.204 1.204 11 H -0.207 1.207 12 C 0.245 3.755 13 O -0.472 6.472 14 C 0.022 3.978 15 H 0.111 0.889 16 C -0.237 4.237 17 O -0.191 6.191 18 C 0.064 3.936 19 C -0.207 4.207 20 C -0.107 4.107 21 C -0.160 4.160 22 C -0.138 4.138 23 C 0.041 3.959 24 F -0.111 7.111 25 H 0.044 0.956 26 H 0.110 0.890 27 H 0.054 0.946 28 H 0.111 0.889 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.118 0.882 33 H 0.077 0.923 34 H 0.161 0.839 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.861 10.899 2.509 11.338 hybrid contribution 0.333 0.133 -0.989 1.052 sum 2.194 11.032 1.520 11.351 Atomic orbital electron populations 1.22060 0.96664 0.99812 1.01796 1.21141 0.94489 0.82471 1.00205 1.43674 1.55254 1.11312 1.05001 1.19920 1.34107 1.10819 0.82869 0.87688 1.25269 0.95194 0.96836 0.99339 1.70121 1.23402 1.28619 1.26822 0.86019 0.79584 0.78704 0.81296 1.19196 1.20376 1.20650 1.19425 0.84392 0.86909 0.84732 1.90577 1.56005 1.69745 1.30912 1.22192 0.97773 0.95042 0.82759 0.88887 1.22449 0.94504 1.02379 1.04390 1.86286 1.83861 1.17139 1.31783 1.19226 0.96222 0.84855 0.93296 1.21367 1.06471 0.94876 0.97966 1.21000 0.97624 0.93972 0.98114 1.20839 1.03210 0.99950 0.92002 1.20955 1.01557 0.90975 1.00300 1.17039 1.08162 0.89386 0.81270 1.91505 1.94105 1.76476 1.49030 0.95583 0.89038 0.94643 0.88875 0.94357 0.91972 0.91583 0.88210 0.92258 0.83930 0.85249 0.85238 0.84461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 9.65 37.16 0.36 -3.03 16 2 C 0.14 3.39 5.27 -4.04 -0.02 3.37 16 3 N -0.43 -10.71 2.64 -114.81 -0.30 -11.01 16 4 C -0.35 -8.24 8.44 -14.93 -0.13 -8.36 16 5 H 0.11 2.26 4.65 -52.49 -0.24 2.01 16 6 C 0.04 0.92 4.96 -17.47 -0.09 0.83 16 7 N -0.85 -20.52 8.40 55.50 0.47 -20.05 16 8 Si 0.92 17.97 29.60 -169.99 -5.03 12.94 16 9 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 10 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 11 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 12 C 0.46 11.45 6.94 -10.99 -0.08 11.37 16 13 O -0.59 -16.61 16.21 -14.07 -0.23 -16.84 16 14 C 0.08 1.68 1.81 -27.88 -0.05 1.63 16 15 H 0.09 1.82 5.84 -51.93 -0.30 1.52 16 16 C -0.18 -3.15 8.83 37.16 0.33 -2.82 16 17 O -0.28 -5.97 9.22 -39.23 -0.36 -6.33 16 18 C 0.11 1.98 6.61 -39.18 -0.26 1.72 16 19 C -0.19 -2.75 8.34 -39.45 -0.33 -3.07 16 20 C -0.09 -1.04 10.04 -39.59 -0.40 -1.43 16 21 C -0.14 -1.54 10.04 -39.56 -0.40 -1.94 16 22 C -0.12 -1.50 10.02 -39.54 -0.40 -1.89 16 23 C 0.06 1.01 7.31 -39.30 -0.29 0.73 16 24 F -0.13 -2.44 17.11 2.25 0.04 -2.40 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.09 2.26 6.13 -51.93 -0.32 1.94 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.09 2.29 6.03 -51.93 -0.31 1.98 16 29 H 0.04 0.94 7.57 -51.93 -0.39 0.54 16 30 H 0.27 6.14 8.31 -40.82 -0.34 5.80 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.10 1.77 5.45 -51.93 -0.28 1.49 16 33 H 0.06 0.86 6.95 -51.93 -0.36 0.50 16 34 H 0.14 1.99 5.39 -52.48 -0.28 1.70 16 35 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 37 H 0.14 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 307.69 15.07 4.64 4.64 Total: -1.00 -29.22 307.69 -6.69 -35.91 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -4.17 Total: 6.04 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -1.74 Total: -2.89 kcal Atomic # 7 Polarization: -31.23 SS G_CDS: 0.16 Total: -31.07 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.59 Total: -23.17 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.04 Total: -2.40 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.22 -6.69 -35.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346493594.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.050 kcal (2) G-P(sol) polarization free energy of solvation -29.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds