Wall clock time and date at job start Tue Mar 31 2020 05:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46945 * 2 1 4 4 C 1.46500 * 120.00261 * 265.09230 * 3 2 1 5 5 C 1.50706 * 109.47022 * 262.22696 * 4 3 2 6 6 H 1.07999 * 119.99602 * 359.97438 * 5 4 3 7 7 C 1.37871 * 119.99889 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00151 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99862 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46982 * 89.99977 * 9 7 5 11 11 H 1.48498 * 109.47018 * 209.99600 * 9 7 5 12 12 H 1.48498 * 109.47240 * 329.99966 * 9 7 5 13 13 C 1.34776 * 120.00046 * 85.08803 * 3 2 1 14 14 O 1.21698 * 120.00180 * 1.95159 * 13 3 2 15 15 C 1.46589 * 119.99876 * 181.95224 * 13 3 2 16 16 C 1.36650 * 125.45442 * 172.14468 * 15 13 3 17 17 C 1.37472 * 113.29228 * 179.97438 * 16 15 13 18 18 C 1.33814 * 115.10282 * 0.02562 * 17 16 15 19 19 C 1.50703 * 124.52115 * 180.02562 * 18 17 16 20 20 C 1.53004 * 109.47038 * 119.99848 * 19 18 17 21 21 C 1.53001 * 109.47053 * 239.99598 * 19 18 17 22 22 S 1.70617 * 110.95514 * 359.97438 * 18 17 16 23 23 H 1.09002 * 109.47301 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47568 * 300.00322 * 1 2 3 25 25 H 1.08997 * 109.47663 * 60.00073 * 1 2 3 26 26 H 1.08996 * 109.47166 * 240.00275 * 2 1 3 27 27 H 1.08998 * 109.46972 * 119.99644 * 2 1 3 28 28 H 1.09011 * 109.46809 * 22.21932 * 4 3 2 29 29 H 1.08998 * 109.47905 * 142.21881 * 4 3 2 30 30 H 0.97000 * 119.99803 * 180.02562 * 8 7 5 31 31 H 1.07993 * 123.35336 * 359.97438 * 16 15 13 32 32 H 1.08000 * 122.44752 * 180.02562 * 17 16 15 33 33 H 1.09001 * 109.47138 * 359.97438 * 19 18 17 34 34 H 1.09001 * 109.47119 * 60.00034 * 20 19 18 35 35 H 1.09005 * 109.47064 * 180.02562 * 20 19 18 36 36 H 1.08991 * 109.47075 * 299.99892 * 20 19 18 37 37 H 1.09005 * 109.47037 * 180.02562 * 21 19 18 38 38 H 1.08993 * 109.47248 * 300.00459 * 21 19 18 39 39 H 1.09005 * 109.46856 * 60.00291 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3648 2.0357 -1.2640 5 6 3.8538 1.9523 -1.4813 6 1 4.4793 1.4612 -0.7506 7 6 4.4172 2.5028 -2.6128 8 7 3.6553 3.1003 -3.5028 9 14 6.2630 2.4000 -2.8817 10 1 6.5861 1.1569 -3.6271 11 1 6.7155 3.5781 -3.6642 12 1 6.9545 2.3831 -1.5677 13 6 2.1487 2.0499 1.1629 14 8 1.8947 1.4949 2.2158 15 6 2.5964 3.4457 1.1595 16 6 2.6227 4.2724 2.2473 17 6 3.0898 5.5331 1.9608 18 6 3.4341 5.7343 0.6835 19 6 3.9706 7.0326 0.1379 20 6 5.3652 6.8022 -0.4479 21 6 3.0364 7.5502 -0.9578 22 16 3.1859 4.3244 -0.2447 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.8494 1.5367 -2.0848 29 1 2.0610 3.0819 -1.2269 30 1 4.0518 3.4873 -4.2990 31 1 2.3079 3.9657 3.2338 32 1 3.1729 6.3048 2.7118 33 1 4.0303 7.7672 0.9410 34 1 5.3051 6.0677 -1.2510 35 1 5.7534 7.7414 -0.8421 36 1 6.0306 6.4335 0.3326 37 1 3.4247 8.4890 -1.3527 38 1 2.9763 6.8158 -1.7608 39 1 2.0429 7.7144 -0.5404 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354774384.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:39 Heat of formation + Delta-G solvation = -21.160996 kcal Electronic energy + Delta-G solvation = -20652.075214 eV Core-core repulsion = 17685.836082 eV Total energy + Delta-G solvation = -2966.239132 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.07149 -37.43111 -35.24737 -34.49955 -33.04253 -30.84993 -28.10886 -27.22639 -26.88447 -24.47575 -23.23587 -22.46399 -20.71831 -19.70904 -17.83987 -17.11549 -16.60967 -15.68066 -14.92741 -14.69562 -14.54166 -14.04416 -13.91362 -13.36715 -13.26225 -12.90617 -12.60444 -12.54697 -12.33438 -12.13682 -11.91195 -11.68656 -11.49424 -11.26470 -11.09050 -10.94964 -10.81502 -10.80187 -10.69173 -10.54578 -10.22835 -9.94551 -9.19846 -9.06539 -8.77899 -8.01509 -7.71542 -7.45346 -6.38133 -4.40395 1.40719 2.58395 3.03802 3.13719 3.15710 3.21193 3.26423 3.90717 4.05867 4.21625 4.95850 5.07210 5.23658 5.40890 5.44326 5.70938 5.77394 5.79008 5.85772 5.86029 6.03583 6.08168 6.11940 6.17362 6.20989 6.30697 6.38915 6.49263 6.52723 6.54866 6.62295 6.75686 6.91946 6.99379 7.19009 7.42356 7.58638 7.76267 8.22046 8.60835 8.98895 9.20190 10.65903 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012609 B = 0.009701 C = 0.006348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.102456 B = 2885.665764 C = 4410.064812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.119 3.881 3 N -0.598 5.598 4 C 0.227 3.773 5 C -0.537 4.537 6 H 0.069 0.931 7 C 0.077 3.923 8 N -0.876 5.876 9 Si 0.887 3.113 10 H -0.276 1.276 11 H -0.280 1.280 12 H -0.268 1.268 13 C 0.590 3.410 14 O -0.569 6.569 15 C -0.297 4.297 16 C -0.082 4.082 17 C -0.170 4.170 18 C -0.291 4.291 19 C -0.018 4.018 20 C -0.148 4.148 21 C -0.147 4.147 22 S 0.405 5.595 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.052 0.948 29 H 0.042 0.958 30 H 0.270 0.730 31 H 0.133 0.867 32 H 0.117 0.883 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.241 4.717 2.199 5.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.004 4.004 3 N -0.328 5.328 4 C 0.104 3.896 5 C -0.579 4.579 6 H 0.087 0.913 7 C -0.129 4.129 8 N -0.513 5.513 9 Si 0.713 3.287 10 H -0.201 1.201 11 H -0.205 1.205 12 H -0.192 1.192 13 C 0.380 3.620 14 O -0.452 6.452 15 C -0.419 4.419 16 C -0.116 4.116 17 C -0.201 4.201 18 C -0.410 4.410 19 C -0.038 4.038 20 C -0.206 4.206 21 C -0.205 4.205 22 S 0.683 5.317 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.097 0.903 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.151 0.849 32 H 0.135 0.865 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.153 4.231 1.006 4.499 hybrid contribution 0.864 0.439 1.345 1.657 sum -0.289 4.669 2.351 5.236 Atomic orbital electron populations 1.22131 0.96772 1.01338 1.02090 1.21245 0.93469 0.83144 1.02573 1.48070 1.63457 1.13537 1.07777 1.19676 0.96698 0.92398 0.80833 1.21522 0.92013 1.37665 1.06662 0.91318 1.24882 0.98593 0.94293 0.95128 1.69906 1.35631 1.35430 1.10297 0.86621 0.84864 0.78211 0.78976 1.20136 1.20536 1.19195 1.17040 0.76848 0.84616 0.83504 1.90683 1.53785 1.69325 1.31371 1.24711 1.16972 0.99484 1.00709 1.20339 1.00437 0.92457 0.98403 1.19574 1.07166 0.97426 0.95922 1.25777 1.07690 1.05645 1.01894 1.19532 0.94694 0.92175 0.97413 1.21943 0.95780 1.01646 1.01260 1.21933 0.99146 1.00959 0.98463 1.85909 1.50439 0.92727 1.02653 0.92283 0.92596 0.92636 0.90285 0.91036 0.92971 0.94143 0.92001 0.84936 0.86499 0.91019 0.91886 0.92606 0.92541 0.92626 0.91802 0.92601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 10.20 37.16 0.38 -2.24 16 2 C 0.12 2.19 6.06 -4.04 -0.02 2.16 16 3 N -0.60 -12.95 2.49 -176.63 -0.44 -13.39 16 4 C 0.23 5.16 4.72 -5.19 -0.02 5.14 16 5 C -0.54 -13.00 6.94 -34.44 -0.24 -13.24 16 6 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 7 C 0.08 1.85 5.02 -17.82 -0.09 1.76 16 8 N -0.88 -21.52 13.29 55.43 0.74 -20.78 16 9 Si 0.89 19.22 29.54 -169.99 -5.02 14.20 16 10 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 11 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 12 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 13 C 0.59 13.58 7.53 -12.89 -0.10 13.48 16 14 O -0.57 -13.92 16.50 5.19 0.09 -13.84 16 15 C -0.30 -6.46 6.23 -36.79 -0.23 -6.69 16 16 C -0.08 -1.61 10.02 -40.43 -0.41 -2.02 16 17 C -0.17 -3.05 9.95 -41.41 -0.41 -3.46 16 18 C -0.29 -5.25 4.95 -35.86 -0.18 -5.43 16 19 C -0.02 -0.28 3.25 -91.77 -0.30 -0.58 16 20 C -0.15 -2.20 9.08 37.16 0.34 -1.86 16 21 C -0.15 -2.07 9.08 37.16 0.34 -1.74 16 22 S 0.41 8.38 15.07 -107.50 -1.62 6.76 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.08 1.37 8.03 -51.93 -0.42 0.95 16 27 H 0.07 1.33 7.55 -51.93 -0.39 0.94 16 28 H 0.05 1.22 8.01 -51.92 -0.42 0.80 16 29 H 0.04 0.96 4.50 -22.37 -0.10 0.86 16 30 H 0.27 6.34 8.31 -40.82 -0.34 6.01 16 31 H 0.13 2.48 8.06 -52.49 -0.42 2.06 16 32 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.07 0.98 8.07 -51.93 -0.42 0.56 16 34 H 0.06 1.05 7.90 -51.93 -0.41 0.64 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 1.00 7.90 -51.93 -0.41 0.59 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 332.43 15.07 5.01 5.01 Total: -1.00 -26.56 332.43 -8.11 -34.67 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.91 Total: 2.09 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -0.94 Total: -14.72 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: 0.30 Total: -34.17 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.09 Total: -13.84 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.02 Total: 14.20 kcal Atomic # 16 Polarization: 8.38 SS G_CDS: -1.62 Total: 6.76 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -26.56 -8.11 -34.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354774384.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.509 kcal (2) G-P(sol) polarization free energy of solvation -26.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds