Wall clock time and date at job start Tue Mar 31 2020 05:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.46897 * 2 1 4 4 C 1.36935 * 119.99816 * 275.31396 * 3 2 1 5 5 H 1.08003 * 120.00262 * 38.97009 * 4 3 2 6 6 C 1.38811 * 119.99670 * 218.96946 * 4 3 2 7 7 N 1.31618 * 120.00262 * 19.31038 * 6 4 3 8 8 Si 1.86802 * 119.99820 * 199.30514 * 6 4 3 9 9 H 1.48505 * 109.46793 * 90.00674 * 8 6 4 10 10 H 1.48499 * 109.47056 * 210.00139 * 8 6 4 11 11 H 1.48494 * 109.47491 * 330.00650 * 8 6 4 12 12 C 1.46501 * 119.99996 * 95.31210 * 3 2 1 13 13 C 1.50698 * 109.47213 * 270.00163 * 12 3 2 14 14 C 1.37837 * 119.94129 * 104.72800 * 13 12 3 15 15 C 1.39687 * 119.87651 * 179.72981 * 14 13 12 16 16 C 1.47597 * 120.12534 * 180.26988 * 15 14 13 17 17 O 1.21485 * 119.99632 * 0.27369 * 16 15 14 18 18 O 1.34725 * 119.99681 * 180.27469 * 16 15 14 19 19 C 1.45208 * 116.99726 * 180.02562 * 18 16 15 20 20 C 1.39733 * 119.75352 * 0.53997 * 15 14 13 21 21 C 1.37805 * 119.86733 * 359.73245 * 20 15 14 22 22 C 1.38652 * 119.93548 * 285.00164 * 13 12 3 23 23 F 1.35098 * 119.87431 * 0.02562 * 22 13 12 24 24 H 1.09010 * 109.47092 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47631 * 299.99817 * 1 2 3 26 26 H 1.08997 * 109.47345 * 60.00382 * 1 2 3 27 27 H 1.08994 * 109.47199 * 239.99937 * 2 1 3 28 28 H 1.08998 * 109.46829 * 119.99710 * 2 1 3 29 29 H 0.96999 * 120.00098 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.46944 * 29.99822 * 12 3 2 31 31 H 1.09000 * 109.47163 * 149.99828 * 12 3 2 32 32 H 1.08003 * 120.06219 * 359.97438 * 14 13 12 33 33 H 1.08997 * 109.47317 * 59.99263 * 19 18 16 34 34 H 1.08997 * 109.46769 * 179.97438 * 19 18 16 35 35 H 1.08996 * 109.46867 * 299.99492 * 19 18 16 36 36 H 1.07993 * 120.06571 * 179.70702 * 20 15 14 37 37 H 1.08007 * 119.93065 * 179.97438 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1429 2.0634 -1.1808 5 1 1.3982 1.9450 -1.9541 6 6 3.2265 2.9069 -1.3840 7 7 4.3082 2.7783 -0.6453 8 14 3.1494 4.2244 -2.7059 9 1 2.6007 5.4764 -2.1255 10 1 4.5148 4.4792 -3.2311 11 1 2.2713 3.7653 -3.8119 12 6 2.3732 2.0327 1.2633 13 6 1.1611 2.7276 1.8280 14 6 0.4891 2.1775 2.8984 15 6 -0.6309 2.8256 3.4244 16 6 -1.3510 2.2445 4.5743 17 8 -0.9669 1.2032 5.0682 18 8 -2.4343 2.8690 5.0761 19 6 -3.0923 2.2404 6.2076 20 6 -1.0704 4.0233 2.8543 21 6 -0.3942 4.5611 1.7808 22 6 0.7205 3.9162 1.2663 23 9 1.3793 4.4478 0.2134 24 1 -0.3634 -1.0278 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 5.0655 3.3676 -0.7875 30 1 2.7255 1.2833 1.9721 31 1 3.1616 2.7642 1.0860 32 1 0.8303 1.2491 3.3322 33 1 -2.3901 2.1597 7.0374 34 1 -3.9467 2.8446 6.5125 35 1 -3.4337 1.2454 5.9226 36 1 -1.9386 4.5262 3.2540 37 1 -0.7333 5.4866 1.3391 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358067820.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:15 Heat of formation + Delta-G solvation = -83.294147 kcal Electronic energy + Delta-G solvation = -22541.866412 eV Core-core repulsion = 19006.719809 eV Total energy + Delta-G solvation = -3535.146604 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.06728 -40.40708 -38.43101 -36.34495 -35.85525 -31.90285 -31.65399 -30.68139 -28.79693 -27.66595 -25.67152 -23.70754 -23.59342 -21.76936 -20.78295 -20.00300 -17.62552 -17.20919 -16.66015 -16.53801 -16.31398 -15.67811 -14.90904 -14.75409 -14.26981 -13.77113 -13.72152 -13.62288 -13.39211 -13.00510 -12.70643 -12.59744 -12.40632 -12.10830 -11.78223 -11.68357 -11.29103 -11.10629 -10.84601 -10.71750 -10.62998 -10.48990 -10.44539 -10.10517 -10.03112 -9.81490 -8.63804 -8.48787 -8.15796 -6.62557 -5.83403 -3.42016 0.92093 1.61656 2.68856 2.71937 3.38485 3.44726 3.46837 3.98651 4.48907 4.76990 4.83389 4.99482 5.07011 5.07461 5.23681 5.35136 5.38666 5.53698 5.59873 5.69956 6.03815 6.09798 6.23034 6.31144 6.36331 6.39498 6.40395 6.50540 6.63358 6.65306 6.89878 6.94111 7.13756 7.26954 7.49942 7.80848 7.81410 8.48735 9.13772 9.75682 10.33535 11.17523 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.025060 B = 0.005472 C = 0.004903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.047463 B = 5116.140054 C = 5709.664828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.142 3.858 3 N -0.574 5.574 4 C -0.258 4.258 5 H 0.058 0.942 6 C 0.027 3.973 7 N -0.885 5.885 8 Si 0.893 3.107 9 H -0.280 1.280 10 H -0.292 1.292 11 H -0.278 1.278 12 C 0.175 3.825 13 C -0.125 4.125 14 C -0.029 4.029 15 C -0.157 4.157 16 C 0.514 3.486 17 O -0.512 6.512 18 O -0.358 6.358 19 C 0.037 3.963 20 C -0.053 4.053 21 C -0.182 4.182 22 C 0.162 3.838 23 F -0.108 7.108 24 H 0.036 0.964 25 H 0.043 0.957 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.036 0.964 29 H 0.256 0.744 30 H 0.043 0.957 31 H 0.110 0.890 32 H 0.136 0.864 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.062 0.938 36 H 0.136 0.864 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.198 1.761 9.740 14.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.016 3.984 3 N -0.293 5.293 4 C -0.387 4.387 5 H 0.076 0.924 6 C -0.174 4.174 7 N -0.526 5.526 8 Si 0.722 3.278 9 H -0.206 1.206 10 H -0.219 1.219 11 H -0.203 1.203 12 C 0.048 3.952 13 C -0.129 4.129 14 C -0.048 4.048 15 C -0.158 4.158 16 C 0.360 3.640 17 O -0.401 6.401 18 O -0.275 6.275 19 C -0.057 4.057 20 C -0.072 4.072 21 C -0.201 4.201 22 C 0.142 3.858 23 F -0.086 7.086 24 H 0.055 0.945 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.127 0.873 32 H 0.154 0.846 33 H 0.080 0.920 34 H 0.118 0.882 35 H 0.081 0.919 36 H 0.154 0.846 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.867 1.504 9.815 14.720 hybrid contribution -0.192 0.773 -0.667 1.039 sum -11.059 2.277 9.148 14.531 Atomic orbital electron populations 1.22337 1.00030 0.99068 1.01212 1.20885 0.91657 0.86832 0.99026 1.43734 1.75733 1.08055 1.01785 1.18941 1.03561 1.22469 0.93739 0.92393 1.25127 0.94030 1.00574 0.97658 1.69937 1.03223 1.37915 1.41540 0.86464 0.76802 0.82907 0.81580 1.20643 1.21875 1.20321 1.20051 0.91597 0.97002 0.86505 1.21465 1.02542 0.94004 0.94896 1.21014 0.91669 0.98477 0.93683 1.18974 0.99698 0.98987 0.98138 1.21271 0.78095 0.82114 0.82485 1.90817 1.66148 1.23213 1.59916 1.86554 1.41416 1.52605 1.46915 1.23230 0.96957 0.98836 0.86656 1.21009 0.98441 0.93722 0.94058 1.21081 0.97010 1.02390 0.99601 1.17961 0.90739 0.92009 0.85122 1.91627 1.79059 1.84963 1.52920 0.94455 0.93802 0.93311 0.93421 0.94589 0.93386 0.93898 0.87315 0.84595 0.91958 0.88224 0.91945 0.84614 0.84789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 10.21 37.16 0.38 -2.76 16 2 C 0.14 2.98 6.44 -4.04 -0.03 2.96 16 3 N -0.57 -13.84 2.41 -174.61 -0.42 -14.26 16 4 C -0.26 -6.82 8.28 -15.06 -0.12 -6.95 16 5 H 0.06 1.57 7.90 -52.48 -0.41 1.16 16 6 C 0.03 0.73 4.02 -17.43 -0.07 0.66 16 7 N -0.88 -24.67 11.44 55.49 0.63 -24.03 16 8 Si 0.89 21.53 28.93 -169.99 -4.92 16.61 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 12 C 0.17 3.97 5.18 -5.19 -0.03 3.94 16 13 C -0.12 -2.48 5.26 -104.62 -0.55 -3.03 16 14 C -0.03 -0.52 8.54 -39.19 -0.33 -0.85 16 15 C -0.16 -2.51 5.87 -104.98 -0.62 -3.12 16 16 C 0.51 7.95 7.89 34.55 0.27 8.22 16 17 O -0.51 -8.97 16.13 -19.25 -0.31 -9.28 16 18 O -0.36 -4.59 9.81 -40.56 -0.40 -4.99 16 19 C 0.04 0.34 10.57 101.05 1.07 1.41 16 20 C -0.05 -0.77 9.61 -39.18 -0.38 -1.15 16 21 C -0.18 -2.89 10.01 -39.58 -0.40 -3.29 16 22 C 0.16 3.20 7.21 -39.26 -0.28 2.92 16 23 F -0.11 -2.45 13.81 2.25 0.03 -2.42 16 24 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 25 H 0.04 0.83 7.26 -51.93 -0.38 0.46 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 28 H 0.04 0.71 7.83 -51.93 -0.41 0.30 16 29 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.04 0.91 7.66 -51.93 -0.40 0.52 16 31 H 0.11 2.80 5.47 -51.93 -0.28 2.52 16 32 H 0.14 2.36 7.59 -52.48 -0.40 1.96 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.14 1.58 7.61 -52.49 -0.40 1.18 16 37 H 0.13 1.80 8.06 -52.48 -0.42 1.38 16 LS Contribution 319.42 15.07 4.81 4.81 Total: -1.00 -29.56 319.42 -6.42 -35.98 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -4.77 Total: -1.39 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -1.09 Total: -1.04 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.21 Total: -38.29 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.71 Total: -14.26 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.03 Total: -2.42 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.92 Total: 16.61 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.56 -6.42 -35.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358067820.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.315 kcal (2) G-P(sol) polarization free energy of solvation -29.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds