Wall clock time and date at job start Tue Mar 31 2020 05:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.46897 * 2 1 4 4 C 1.36935 * 119.99816 * 275.31396 * 3 2 1 5 5 H 1.08003 * 120.00262 * 38.97009 * 4 3 2 6 6 C 1.38811 * 119.99670 * 218.96946 * 4 3 2 7 7 N 1.31618 * 120.00262 * 19.31038 * 6 4 3 8 8 Si 1.86802 * 119.99820 * 199.30514 * 6 4 3 9 9 H 1.48505 * 109.46793 * 90.00674 * 8 6 4 10 10 H 1.48499 * 109.47056 * 210.00139 * 8 6 4 11 11 H 1.48494 * 109.47491 * 330.00650 * 8 6 4 12 12 C 1.46501 * 119.99996 * 95.31210 * 3 2 1 13 13 C 1.50698 * 109.47213 * 270.00163 * 12 3 2 14 14 C 1.37837 * 119.94129 * 104.72800 * 13 12 3 15 15 C 1.39687 * 119.87651 * 179.72981 * 14 13 12 16 16 C 1.47597 * 120.12534 * 180.26988 * 15 14 13 17 17 O 1.21485 * 119.99632 * 0.27369 * 16 15 14 18 18 O 1.34725 * 119.99681 * 180.27469 * 16 15 14 19 19 C 1.45208 * 116.99726 * 180.02562 * 18 16 15 20 20 C 1.39733 * 119.75352 * 0.53997 * 15 14 13 21 21 C 1.37805 * 119.86733 * 359.73245 * 20 15 14 22 22 C 1.38652 * 119.93548 * 285.00164 * 13 12 3 23 23 F 1.35098 * 119.87431 * 0.02562 * 22 13 12 24 24 H 1.09010 * 109.47092 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47631 * 299.99817 * 1 2 3 26 26 H 1.08997 * 109.47345 * 60.00382 * 1 2 3 27 27 H 1.08994 * 109.47199 * 239.99937 * 2 1 3 28 28 H 1.08998 * 109.46829 * 119.99710 * 2 1 3 29 29 H 0.96999 * 120.00098 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.46944 * 29.99822 * 12 3 2 31 31 H 1.09000 * 109.47163 * 149.99828 * 12 3 2 32 32 H 1.08003 * 120.06219 * 359.97438 * 14 13 12 33 33 H 1.08997 * 109.47317 * 59.99263 * 19 18 16 34 34 H 1.08997 * 109.46769 * 179.97438 * 19 18 16 35 35 H 1.08996 * 109.46867 * 299.99492 * 19 18 16 36 36 H 1.07993 * 120.06571 * 179.70702 * 20 15 14 37 37 H 1.08007 * 119.93065 * 179.97438 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1429 2.0634 -1.1808 5 1 1.3982 1.9450 -1.9541 6 6 3.2265 2.9069 -1.3840 7 7 4.3082 2.7783 -0.6453 8 14 3.1494 4.2244 -2.7059 9 1 2.6007 5.4764 -2.1255 10 1 4.5148 4.4792 -3.2311 11 1 2.2713 3.7653 -3.8119 12 6 2.3732 2.0327 1.2633 13 6 1.1611 2.7276 1.8280 14 6 0.4891 2.1775 2.8984 15 6 -0.6309 2.8256 3.4244 16 6 -1.3510 2.2445 4.5743 17 8 -0.9669 1.2032 5.0682 18 8 -2.4343 2.8690 5.0761 19 6 -3.0923 2.2404 6.2076 20 6 -1.0704 4.0233 2.8543 21 6 -0.3942 4.5611 1.7808 22 6 0.7205 3.9162 1.2663 23 9 1.3793 4.4478 0.2134 24 1 -0.3634 -1.0278 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 5.0655 3.3676 -0.7875 30 1 2.7255 1.2833 1.9721 31 1 3.1616 2.7642 1.0860 32 1 0.8303 1.2491 3.3322 33 1 -2.3901 2.1597 7.0374 34 1 -3.9467 2.8446 6.5125 35 1 -3.4337 1.2454 5.9226 36 1 -1.9386 4.5262 3.2540 37 1 -0.7333 5.4866 1.3391 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358067820.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:14 Heat of formation + Delta-G solvation = -98.791171 kcal Electronic energy + Delta-G solvation = -22542.538414 eV Core-core repulsion = 19006.719809 eV Total energy + Delta-G solvation = -3535.818605 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.66190 -41.58105 -39.78888 -37.65053 -37.42185 -33.83030 -33.13637 -31.99665 -30.47077 -28.58656 -27.43177 -25.41320 -24.87027 -23.16305 -22.34660 -21.47322 -19.03345 -18.57242 -18.26612 -17.94415 -17.37011 -17.18537 -16.66801 -16.40921 -15.66843 -15.53269 -15.33336 -14.88327 -14.49902 -14.39745 -14.20654 -14.10440 -13.90915 -13.31908 -13.22252 -13.03484 -12.91410 -12.88249 -12.61160 -12.36699 -12.09680 -11.98583 -11.79517 -11.78064 -11.65581 -11.53604 -10.50389 -9.96881 -9.62129 -8.56736 -7.82954 -5.46203 -0.40910 0.28798 1.40840 1.45269 1.49411 1.52794 1.66962 2.50745 2.66416 3.29737 3.41444 3.67822 3.75786 3.83087 3.96988 4.20644 4.32277 4.35865 4.37749 4.41380 4.64927 4.74013 4.75400 4.83260 4.93114 4.98449 5.05659 5.12394 5.19391 5.26032 5.29140 5.39769 5.53249 5.62708 5.72386 5.86754 6.48488 6.66632 7.17753 7.83735 8.37753 9.14321 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.025060 B = 0.005472 C = 0.004903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.047463 B = 5116.140054 C = 5709.664828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.137 3.863 3 N -0.590 5.590 4 C -0.258 4.258 5 H 0.046 0.954 6 C -0.009 4.009 7 N -0.914 5.914 8 Si 0.937 3.063 9 H -0.280 1.280 10 H -0.294 1.294 11 H -0.272 1.272 12 C 0.180 3.820 13 C -0.139 4.139 14 C -0.029 4.029 15 C -0.156 4.156 16 C 0.520 3.480 17 O -0.537 6.537 18 O -0.353 6.353 19 C 0.029 3.971 20 C -0.029 4.029 21 C -0.170 4.170 22 C 0.131 3.869 23 F -0.134 7.134 24 H 0.066 0.934 25 H 0.040 0.960 26 H 0.034 0.966 27 H 0.037 0.963 28 H 0.047 0.953 29 H 0.252 0.748 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.134 0.866 33 H 0.063 0.937 34 H 0.138 0.862 35 H 0.062 0.938 36 H 0.177 0.823 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.070 2.465 11.102 18.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.012 3.988 3 N -0.310 5.310 4 C -0.388 4.388 5 H 0.064 0.936 6 C -0.207 4.207 7 N -0.558 5.558 8 Si 0.766 3.234 9 H -0.206 1.206 10 H -0.221 1.221 11 H -0.197 1.197 12 C 0.054 3.946 13 C -0.142 4.142 14 C -0.049 4.049 15 C -0.157 4.157 16 C 0.367 3.633 17 O -0.428 6.428 18 O -0.269 6.269 19 C -0.064 4.064 20 C -0.047 4.047 21 C -0.188 4.188 22 C 0.111 3.889 23 F -0.112 7.112 24 H 0.084 0.916 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.152 0.848 33 H 0.081 0.919 34 H 0.156 0.844 35 H 0.080 0.920 36 H 0.194 0.806 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -13.781 2.211 11.195 17.893 hybrid contribution 0.558 0.522 -0.913 1.191 sum -13.223 2.733 10.282 16.972 Atomic orbital electron populations 1.22138 0.97948 1.00644 1.00283 1.20995 0.93226 0.85521 0.99062 1.43898 1.76239 1.09245 1.01633 1.18955 1.02870 1.22529 0.94405 0.93602 1.25581 0.93824 1.02021 0.99251 1.70044 1.03742 1.38772 1.43201 0.85763 0.76509 0.81144 0.79998 1.20645 1.22118 1.19738 1.19780 0.92232 0.96346 0.86219 1.21072 1.01930 0.94861 0.96386 1.20923 0.92289 0.98535 0.93111 1.19114 0.98999 0.99302 0.98281 1.21082 0.78541 0.81644 0.82068 1.90816 1.67003 1.24350 1.60647 1.86528 1.40156 1.52329 1.47863 1.23616 0.97810 0.99687 0.85317 1.21419 0.98482 0.92452 0.92391 1.21368 0.95199 1.02887 0.99356 1.18389 0.92380 0.92836 0.85309 1.91553 1.79947 1.85332 1.54345 0.91551 0.94084 0.94722 0.94474 0.93420 0.93888 0.93659 0.90658 0.84778 0.91862 0.84423 0.91963 0.80592 0.81900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.52 10.21 71.98 0.73 -4.79 16 2 C 0.14 5.79 6.44 86.38 0.56 6.35 16 3 N -0.59 -29.10 2.41 -706.34 -1.70 -30.80 16 4 C -0.26 -13.98 8.28 84.03 0.70 -13.28 16 5 H 0.05 2.56 7.90 -2.91 -0.02 2.54 16 6 C -0.01 -0.47 4.02 84.86 0.34 -0.13 16 7 N -0.91 -52.82 11.44 21.65 0.25 -52.57 16 8 Si 0.94 45.05 28.93 68.60 1.98 47.04 16 9 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 10 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 11 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 12 C 0.18 8.45 5.18 85.63 0.44 8.90 16 13 C -0.14 -5.54 5.26 -19.86 -0.10 -5.65 16 14 C -0.03 -1.01 8.54 22.53 0.19 -0.82 16 15 C -0.16 -4.57 5.87 -20.10 -0.12 -4.69 16 16 C 0.52 14.59 7.89 70.29 0.55 15.14 16 17 O -0.54 -17.79 16.13 19.88 0.32 -17.47 16 18 O -0.35 -7.62 9.81 -56.35 -0.55 -8.17 16 19 C 0.03 0.42 10.57 113.37 1.20 1.62 16 20 C -0.03 -0.73 9.61 22.53 0.22 -0.51 16 21 C -0.17 -4.91 10.01 22.27 0.22 -4.69 16 22 C 0.13 5.12 7.21 22.48 0.16 5.28 16 23 F -0.13 -6.17 13.81 44.97 0.62 -5.55 16 24 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 25 H 0.04 1.51 7.26 -2.39 -0.02 1.49 16 26 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.04 1.61 8.08 -2.39 -0.02 1.59 16 28 H 0.05 1.87 7.83 -2.39 -0.02 1.85 16 29 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 30 H 0.05 2.00 7.66 -2.39 -0.02 1.99 16 31 H 0.08 4.08 5.47 -2.39 -0.01 4.07 16 32 H 0.13 4.61 7.59 -2.91 -0.02 4.59 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.18 3.03 7.61 -2.91 -0.02 3.01 16 37 H 0.16 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -65.55 319.42 7.09 -58.46 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: 1.08 Total: 6.35 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 5.09 Total: 2.73 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: -1.45 Total: -83.37 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.23 Total: -25.65 kcal Atomic # 9 Polarization: -6.17 SS G_CDS: 0.62 Total: -5.55 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.98 Total: 47.04 kcal Total: -65.55 7.09 -58.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358067820.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.332 kcal (2) G-P(sol) polarization free energy of solvation -65.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds