Wall clock time and date at job start Tue Mar 31 2020 05:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35944 * 116.99964 * 2 1 4 4 C 1.38729 * 120.03255 * 0.25583 * 3 2 1 5 5 C 1.38123 * 119.97165 * 180.32376 * 4 3 2 6 6 C 1.38475 * 120.02910 * 359.69426 * 5 4 3 7 7 F 1.35098 * 119.97430 * 180.02562 * 6 5 4 8 8 C 1.38435 * 120.06294 * 0.02562 * 6 5 4 9 9 C 1.38177 * 120.02434 * 0.02562 * 8 6 5 10 10 C 1.50705 * 120.01057 * 179.97438 * 9 8 6 11 11 N 1.46901 * 109.46777 * 259.99369 * 10 9 8 12 12 C 1.47962 * 110.99872 * 170.00090 * 11 10 9 13 13 C 1.53936 * 86.18114 * 222.42159 * 12 11 10 14 14 O 1.42894 * 113.73136 * 269.25675 * 13 12 11 15 15 C 1.50704 * 113.73419 * 138.08099 * 13 12 11 16 16 H 1.07997 * 119.99971 * 17.15828 * 15 13 12 17 17 C 1.37875 * 119.99930 * 197.16645 * 15 13 12 18 18 N 1.31517 * 119.99957 * 194.36598 * 17 15 13 19 19 Si 1.86800 * 120.00135 * 14.35819 * 17 15 13 20 20 H 1.48499 * 109.47279 * 180.02562 * 19 17 15 21 21 H 1.48500 * 109.47539 * 300.00757 * 19 17 15 22 22 H 1.48501 * 109.47023 * 60.00547 * 19 17 15 23 23 C 1.48191 * 111.06779 * 70.56901 * 11 10 9 24 24 H 1.08995 * 109.46658 * 59.99851 * 1 2 3 25 25 H 1.09004 * 109.46620 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47186 * 299.99638 * 1 2 3 27 27 H 1.07998 * 120.01261 * 0.02562 * 4 3 2 28 28 H 1.07999 * 119.98757 * 179.72277 * 5 4 3 29 29 H 1.07994 * 119.99085 * 180.02562 * 8 6 5 30 30 H 1.08997 * 109.47014 * 140.00063 * 10 9 8 31 31 H 1.09001 * 109.47063 * 19.99733 * 10 9 8 32 32 H 1.08999 * 113.75796 * 108.09869 * 12 11 10 33 33 H 1.09006 * 113.85766 * 336.74932 * 12 11 10 34 34 H 0.96707 * 114.00278 * 174.16088 * 14 13 12 35 35 H 0.96997 * 119.99760 * 354.85817 * 18 17 15 36 36 H 1.09000 * 113.75867 * 23.24178 * 23 11 10 37 37 H 1.08995 * 113.82403 * 251.80894 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2913 2.3752 0.0054 5 6 1.9197 3.6052 -0.0014 6 6 3.3025 3.6769 -0.0071 7 9 3.9159 4.8806 -0.0132 8 6 4.0572 2.5163 -0.0066 9 6 3.4311 1.2846 -0.0009 10 6 4.2529 0.0213 -0.0010 11 7 4.3127 -0.5238 -1.3638 12 6 5.2994 -1.6229 -1.4524 13 6 5.7303 -0.9903 -2.7880 14 8 5.0259 -1.5026 -3.9207 15 6 7.2234 -0.9582 -2.9901 16 1 7.8633 -1.5872 -2.3891 17 6 7.7724 -0.1255 -3.9421 18 7 9.0212 -0.2917 -4.3196 19 14 6.7425 1.2384 -4.6958 20 1 7.5588 1.9855 -5.6861 21 1 5.5599 0.6490 -5.3737 22 1 6.2896 2.1649 -3.6273 23 6 5.1505 0.3269 -2.2415 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2128 2.3195 0.0100 28 1 1.3322 4.5114 -0.0018 29 1 5.1356 2.5737 -0.0107 30 1 3.7938 -0.7108 0.6633 31 1 5.2619 0.2443 0.3458 32 1 4.8490 -2.6098 -1.5589 33 1 6.0690 -1.5877 -0.6812 34 1 5.2287 -1.0468 -4.7492 35 1 9.5783 -0.9504 -3.8762 36 1 5.8758 0.9351 -1.7012 37 1 4.5815 0.8949 -2.9774 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361142821.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:01 Heat of formation + Delta-G solvation = -84.848961 kcal Electronic energy + Delta-G solvation = -22450.223043 eV Core-core repulsion = 18915.009018 eV Total energy + Delta-G solvation = -3535.214025 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.83560 -41.53173 -40.61533 -38.20619 -36.47445 -34.64747 -33.42792 -30.90069 -29.81136 -28.08864 -27.25280 -27.14914 -24.22038 -23.31192 -22.17510 -20.88507 -19.89739 -18.97886 -18.13502 -17.96896 -17.44873 -16.93990 -16.68465 -16.39764 -16.28008 -15.81623 -15.57862 -15.26296 -15.12928 -14.86489 -14.37035 -14.03332 -13.81412 -13.70085 -13.32572 -13.24522 -12.85908 -12.63918 -12.58929 -12.29009 -12.14180 -11.81483 -11.64869 -11.62954 -11.20913 -10.91556 -10.31718 -10.07705 -9.70672 -9.04346 -8.82187 -6.58841 0.09167 0.19899 1.35220 1.44935 1.62275 2.34920 2.37546 2.48783 2.89568 3.03870 3.25736 3.54277 3.67102 3.76783 3.93521 4.05857 4.10723 4.13985 4.30184 4.42074 4.44734 4.47282 4.53489 4.67466 4.70486 4.77708 4.83515 4.85799 5.04430 5.09743 5.21051 5.24750 5.40748 5.69465 5.70722 5.87985 6.13634 6.39486 6.44949 7.01515 7.24930 8.49824 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017725 B = 0.006178 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.314677 B = 4530.997428 C = 5460.453736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.321 6.321 3 C 0.135 3.865 4 C -0.178 4.178 5 C -0.105 4.105 6 C 0.040 3.960 7 F -0.149 7.149 8 C -0.119 4.119 9 C -0.099 4.099 10 C 0.068 3.932 11 N -0.459 5.459 12 C 0.029 3.971 13 C 0.189 3.811 14 O -0.570 6.570 15 C -0.622 4.622 16 H 0.028 0.972 17 C -0.008 4.008 18 N -0.924 5.924 19 Si 1.075 2.925 20 H -0.286 1.286 21 H -0.248 1.248 22 H -0.254 1.254 23 C -0.020 4.020 24 H 0.065 0.935 25 H 0.112 0.888 26 H 0.074 0.926 27 H 0.172 0.828 28 H 0.166 0.834 29 H 0.133 0.867 30 H 0.094 0.906 31 H 0.047 0.953 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.367 0.633 35 H 0.257 0.743 36 H 0.067 0.933 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.259 7.085 10.370 22.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.234 6.234 3 C 0.088 3.912 4 C -0.196 4.196 5 C -0.124 4.124 6 C 0.020 3.980 7 F -0.128 7.128 8 C -0.139 4.139 9 C -0.101 4.101 10 C -0.060 4.060 11 N -0.181 5.181 12 C -0.099 4.099 13 C 0.149 3.851 14 O -0.378 6.378 15 C -0.660 4.660 16 H 0.047 0.953 17 C -0.208 4.208 18 N -0.558 5.558 19 Si 0.896 3.104 20 H -0.212 1.212 21 H -0.173 1.173 22 H -0.178 1.178 23 C -0.150 4.150 24 H 0.083 0.917 25 H 0.130 0.870 26 H 0.093 0.907 27 H 0.189 0.811 28 H 0.183 0.817 29 H 0.151 0.849 30 H 0.112 0.888 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.216 0.784 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.072 7.565 9.564 23.486 hybrid contribution 1.930 -0.658 1.067 2.301 sum -18.142 6.907 10.631 22.133 Atomic orbital electron populations 1.23390 0.76452 1.05521 1.02477 1.86190 1.23332 1.26034 1.87848 1.18935 0.91297 0.85545 0.95421 1.21388 1.01808 0.90183 1.06209 1.21206 0.91715 0.99996 0.99441 1.17682 0.91824 0.79947 1.08519 1.91461 1.83682 1.43114 1.94580 1.20979 1.00814 0.90769 1.01314 1.18920 0.91734 0.94218 1.05194 1.21419 0.97754 0.94182 0.92622 1.68657 1.36916 1.05082 1.07445 1.23865 0.93371 0.96842 0.95838 1.20407 0.88970 0.90706 0.85062 1.86341 1.69580 1.63199 1.18668 1.22485 0.92460 1.26545 1.24524 0.95334 1.27156 0.98162 1.00786 0.94725 1.70950 1.09544 1.36564 1.38778 0.83733 0.74704 0.74772 0.77153 1.21219 1.17313 1.17804 1.24802 0.95005 0.97536 0.97624 0.91684 0.86966 0.90741 0.81111 0.81651 0.84932 0.88822 0.93464 0.89882 0.90773 0.78379 0.93368 0.91492 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.32 -8.07 9.73 -92.91 -0.90 -8.97 16 3 C 0.13 3.49 6.66 22.49 0.15 3.64 16 4 C -0.18 -3.47 9.04 22.36 0.20 -3.27 16 5 C -0.10 -2.14 10.02 22.30 0.22 -1.91 16 6 C 0.04 1.04 7.30 22.37 0.16 1.21 16 7 F -0.15 -4.16 17.27 44.97 0.78 -3.38 16 8 C -0.12 -3.50 9.45 22.30 0.21 -3.29 16 9 C -0.10 -2.98 4.98 -19.77 -0.10 -3.08 16 10 C 0.07 2.23 4.61 85.56 0.39 2.62 16 11 N -0.46 -17.91 6.25 -914.72 -5.72 -23.63 16 12 C 0.03 1.24 7.36 86.41 0.64 1.88 16 13 C 0.19 9.13 1.07 -10.89 -0.01 9.11 16 14 O -0.57 -27.68 13.47 -148.98 -2.01 -29.68 16 15 C -0.62 -35.01 9.04 25.60 0.23 -34.78 16 16 H 0.03 1.76 8.06 -2.91 -0.02 1.73 16 17 C -0.01 -0.43 5.44 84.65 0.46 0.03 16 18 N -0.92 -56.46 13.70 21.45 0.29 -56.17 16 19 Si 1.08 48.20 24.55 68.60 1.68 49.88 16 20 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 21 H -0.25 -9.81 5.81 99.48 0.58 -9.23 16 22 H -0.25 -10.48 6.48 99.48 0.64 -9.84 16 23 C -0.02 -0.87 4.10 86.37 0.35 -0.52 16 24 H 0.06 0.81 7.67 -2.39 -0.02 0.79 16 25 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.07 0.73 7.65 -2.39 -0.02 0.71 16 27 H 0.17 2.06 6.30 -2.91 -0.02 2.04 16 28 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 29 H 0.13 3.93 8.04 -2.91 -0.02 3.91 16 30 H 0.09 2.86 7.86 -2.39 -0.02 2.84 16 31 H 0.05 1.54 7.56 -2.39 -0.02 1.52 16 32 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 33 H 0.07 3.03 7.75 -2.38 -0.02 3.02 16 34 H 0.37 16.59 6.07 -74.05 -0.45 16.14 16 35 H 0.26 15.94 8.73 -92.71 -0.81 15.14 16 36 H 0.07 2.90 7.62 -2.39 -0.02 2.88 16 37 H 0.07 3.02 6.86 -2.39 -0.02 3.00 16 Total: -1.00 -68.23 307.73 -1.43 -69.66 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: 0.42 Total: 29.32 kcal Atomic # 6 Polarization: -31.05 SS G_CDS: 4.03 Total: -27.02 kcal Atomic # 7 Polarization: -74.38 SS G_CDS: -5.42 Total: -79.80 kcal Atomic # 8 Polarization: -35.74 SS G_CDS: -2.91 Total: -38.65 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.78 Total: -3.38 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 1.68 Total: 49.88 kcal Total: -68.23 -1.43 -69.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361142821.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.193 kcal (2) G-P(sol) polarization free energy of solvation -68.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds