Wall clock time and date at job start Tue Mar 31 2020 05:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47161 * 2 1 4 4 C 1.53009 * 109.46633 * 120.00089 * 2 1 3 5 5 C 1.52992 * 109.47179 * 65.93365 * 4 2 1 6 6 H 1.09000 * 109.47624 * 305.45596 * 5 4 2 7 7 N 1.46901 * 109.47111 * 185.45030 * 5 4 2 8 8 C 1.46900 * 110.99631 * 85.75071 * 7 5 4 9 9 C 1.50700 * 109.46920 * 174.74329 * 8 7 5 10 10 H 1.07999 * 120.00038 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99961 * 179.97438 * 9 8 7 12 12 N 1.31510 * 120.00174 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 120.00127 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47342 * 89.99862 * 13 11 9 15 15 H 1.48500 * 109.47050 * 210.00098 * 13 11 9 16 16 H 1.48503 * 109.47053 * 329.99993 * 13 11 9 17 17 C 1.50708 * 109.47229 * 65.45272 * 5 4 2 18 18 C 1.38245 * 119.98408 * 79.72474 * 17 5 4 19 19 C 1.38216 * 120.01095 * 179.72719 * 18 17 5 20 20 C 1.38355 * 119.98505 * 0.54716 * 19 18 17 21 21 Cl 1.73597 * 120.01266 * 179.74793 * 20 19 18 22 22 C 1.38356 * 119.97296 * 359.72525 * 20 19 18 23 23 C 1.38217 * 119.98426 * 0.02562 * 22 20 19 24 24 H 1.09001 * 109.46807 * 302.49408 * 1 2 3 25 25 H 1.09000 * 109.46889 * 62.48660 * 1 2 3 26 26 H 1.08994 * 109.47615 * 182.49140 * 1 2 3 27 27 H 1.08997 * 109.46765 * 239.99777 * 2 1 3 28 28 H 1.09000 * 109.46486 * 180.02562 * 3 2 1 29 29 H 1.08993 * 109.47096 * 299.99606 * 3 2 1 30 30 H 1.08993 * 109.46999 * 60.00233 * 3 2 1 31 31 H 1.08996 * 109.46840 * 305.93052 * 4 2 1 32 32 H 1.09005 * 109.46137 * 185.93519 * 4 2 1 33 33 H 1.00902 * 111.00073 * 321.80159 * 7 5 4 34 34 H 1.09004 * 109.47228 * 294.74355 * 8 7 5 35 35 H 1.08995 * 109.47125 * 54.74294 * 8 7 5 36 36 H 0.96997 * 120.00588 * 179.97438 * 12 11 9 37 37 H 1.07999 * 119.99407 * 359.97438 * 18 17 5 38 38 H 1.08000 * 120.00839 * 180.27143 * 19 18 17 39 39 H 1.07996 * 120.00373 * 179.97438 * 22 20 19 40 40 H 1.08001 * 119.98586 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6553 -2.2003 1.1770 6 1 0.5796 -2.2891 1.0248 7 7 2.0289 -2.8654 2.4324 8 6 0.9694 -2.7216 3.4398 9 6 1.3291 -3.5219 4.6649 10 1 2.2527 -4.0812 4.6926 11 6 0.4798 -3.5394 5.7509 12 7 -0.6441 -2.8573 5.7178 13 14 0.9260 -4.5310 7.2699 14 1 1.7035 -3.6798 8.2059 15 1 -0.3151 -4.9969 7.9391 16 1 1.7444 -5.7046 6.8721 17 6 2.3805 -2.8524 0.0280 18 6 3.7018 -3.2330 0.1717 19 6 4.3658 -3.8361 -0.8798 20 6 3.7112 -4.0487 -2.0800 21 17 4.5465 -4.8003 -3.4033 22 6 2.3906 -3.6625 -2.2250 23 6 1.7262 -3.0641 -1.1711 24 1 -0.3633 0.5521 0.8668 25 1 -0.3633 0.4747 -0.9115 26 1 -0.3634 -1.0266 0.0447 27 1 1.8933 -0.5139 -0.8900 28 1 3.1301 1.4424 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.5925 -0.2724 2.1361 32 1 3.1248 -0.6302 1.3040 33 1 2.9085 -2.5139 2.7801 34 1 0.8651 -1.6707 3.7099 35 1 0.0273 -3.0868 3.0309 36 1 -1.2418 -2.8698 6.4816 37 1 4.2140 -3.0626 1.1071 38 1 5.3966 -4.1374 -0.7660 39 1 1.8793 -3.8279 -3.1618 40 1 0.6952 -2.7630 -1.2841 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411479225.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:47 Heat of formation + Delta-G solvation = -8.460657 kcal Electronic energy + Delta-G solvation = -19759.088178 eV Core-core repulsion = 16791.356067 eV Total energy + Delta-G solvation = -2967.732110 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.64475 -37.31213 -36.18695 -34.62962 -32.64004 -30.97069 -30.63806 -27.99455 -27.08911 -25.90214 -23.47014 -22.79792 -21.53589 -20.62845 -19.50268 -17.19774 -16.37750 -15.60274 -15.18411 -15.03192 -14.59637 -14.20447 -14.10373 -13.80582 -13.36494 -13.33531 -12.82121 -12.50753 -12.39607 -12.27902 -12.05479 -11.62379 -11.45075 -11.34924 -11.19765 -11.01857 -10.92170 -10.73808 -10.67623 -10.61295 -10.38603 -10.24585 -9.88436 -9.24362 -8.88476 -8.51746 -8.35520 -7.35394 -6.05163 -4.06948 1.31393 1.44438 2.18640 3.30522 3.37004 3.41596 3.78819 4.41156 4.80330 4.94384 4.97292 4.98711 5.06934 5.12321 5.30901 5.40325 5.48766 5.59066 5.63828 5.70818 5.75885 5.82484 5.86817 5.92373 6.03834 6.06935 6.14291 6.20961 6.29653 6.33697 6.43211 6.47965 6.60248 6.83208 6.96904 7.19199 7.35622 7.76199 8.09086 8.33322 8.54101 9.01779 9.58079 11.05617 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014754 B = 0.004483 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.396291 B = 6244.561666 C = 7634.909966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.145 4.145 4 C -0.138 4.138 5 C 0.117 3.883 6 H 0.086 0.914 7 N -0.680 5.680 8 C 0.196 3.804 9 C -0.512 4.512 10 H 0.062 0.938 11 C 0.056 3.944 12 N -0.898 5.898 13 Si 0.898 3.102 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.273 1.273 17 C -0.041 4.041 18 C -0.086 4.086 19 C -0.112 4.112 20 C -0.046 4.046 21 Cl -0.087 7.087 22 C -0.113 4.113 23 C -0.108 4.108 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.329 0.671 34 H -0.011 1.011 35 H 0.027 0.973 36 H 0.261 0.739 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.666 3.934 -15.947 17.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.177 4.177 5 C 0.007 3.993 6 H 0.104 0.896 7 N -0.309 5.309 8 C 0.070 3.930 9 C -0.551 4.551 10 H 0.080 0.920 11 C -0.145 4.145 12 N -0.538 5.538 13 Si 0.725 3.275 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.198 1.198 17 C -0.042 4.042 18 C -0.104 4.104 19 C -0.131 4.131 20 C -0.072 4.072 21 Cl -0.058 7.058 22 C -0.132 4.132 23 C -0.126 4.126 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.146 0.854 34 H 0.007 0.993 35 H 0.045 0.955 36 H 0.071 0.929 37 H 0.150 0.850 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.348 3.266 -16.129 17.638 hybrid contribution 0.269 0.307 1.028 1.107 sum 6.617 3.573 -15.100 16.869 Atomic orbital electron populations 1.21906 0.95323 1.02072 1.01367 1.21110 0.95879 0.95798 0.98646 1.21830 1.00663 0.96398 1.01398 1.22379 1.00859 0.96124 0.98321 1.20621 0.98913 0.89963 0.89846 0.89624 1.60778 1.07102 1.58728 1.04293 1.19579 0.89567 0.95053 0.88803 1.21167 1.06170 1.29200 0.98568 0.91964 1.24971 0.94981 0.95781 0.98765 1.69951 1.11006 1.41784 1.31020 0.86505 0.77806 0.80405 0.82739 1.20748 1.21263 1.19772 1.20130 0.93876 0.95740 0.94409 1.20947 0.94363 0.97176 0.97946 1.21016 1.00334 1.00086 0.91676 1.20833 0.93724 1.02815 0.89829 1.98342 1.78528 1.81159 1.47817 1.20925 0.92722 0.99754 0.99759 1.20989 1.00009 0.99231 0.92408 0.92575 0.93189 0.92312 0.91116 0.93017 0.93120 0.92777 0.91073 0.92079 0.85439 0.99344 0.95494 0.92926 0.85047 0.85456 0.85512 0.85473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.03 37.16 0.34 -1.48 16 2 C -0.10 -1.16 2.77 -90.61 -0.25 -1.41 16 3 C -0.15 -1.60 9.19 37.16 0.34 -1.26 16 4 C -0.14 -1.98 4.11 -26.73 -0.11 -2.08 16 5 C 0.12 1.90 2.15 -68.86 -0.15 1.76 16 6 H 0.09 1.49 5.74 -51.93 -0.30 1.19 16 7 N -0.68 -13.59 5.66 -109.22 -0.62 -14.21 16 8 C 0.20 4.91 5.26 -4.98 -0.03 4.88 16 9 C -0.51 -14.17 9.36 -34.44 -0.32 -14.50 16 10 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 11 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 12 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 13 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 17 C -0.04 -0.59 4.25 -104.62 -0.44 -1.04 16 18 C -0.09 -1.20 9.31 -39.59 -0.37 -1.57 16 19 C -0.11 -1.44 9.83 -39.55 -0.39 -1.83 16 20 C -0.05 -0.58 6.32 -39.49 -0.25 -0.83 16 21 Cl -0.09 -1.00 28.96 -51.86 -1.50 -2.51 16 22 C -0.11 -1.39 9.83 -39.55 -0.39 -1.78 16 23 C -0.11 -1.41 8.59 -39.59 -0.34 -1.75 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.74 6.38 -51.93 -0.33 0.41 16 27 H 0.07 0.86 6.42 -51.93 -0.33 0.52 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.16 7.48 -51.93 -0.39 0.77 16 32 H 0.06 0.84 8.13 -51.93 -0.42 0.41 16 33 H 0.33 6.21 7.91 -39.29 -0.31 5.90 16 34 H -0.01 -0.30 7.52 -51.93 -0.39 -0.69 16 35 H 0.03 0.73 7.92 -51.93 -0.41 0.32 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.13 1.78 7.28 -52.49 -0.38 1.40 16 38 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 39 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.13 1.48 8.04 -52.49 -0.42 1.06 16 LS Contribution 340.00 15.07 5.12 5.12 Total: -1.00 -28.72 340.00 -9.93 -38.65 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -6.19 Total: 3.50 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -2.46 Total: -21.39 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.12 Total: -39.83 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.50 Total: -2.51 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.72 -9.93 -38.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411479225.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.190 kcal (2) G-P(sol) polarization free energy of solvation -28.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds