Wall clock time and date at job start Tue Mar 31 2020 05:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47161 * 2 1 4 4 C 1.53009 * 109.46633 * 120.00089 * 2 1 3 5 5 C 1.52992 * 109.47179 * 65.93365 * 4 2 1 6 6 H 1.09000 * 109.47624 * 305.45596 * 5 4 2 7 7 N 1.46901 * 109.47111 * 185.45030 * 5 4 2 8 8 C 1.46900 * 110.99631 * 85.75071 * 7 5 4 9 9 C 1.50700 * 109.46920 * 174.74329 * 8 7 5 10 10 H 1.07999 * 120.00038 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99961 * 179.97438 * 9 8 7 12 12 N 1.31510 * 120.00174 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 120.00127 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47342 * 89.99862 * 13 11 9 15 15 H 1.48500 * 109.47050 * 210.00098 * 13 11 9 16 16 H 1.48503 * 109.47053 * 329.99993 * 13 11 9 17 17 C 1.50708 * 109.47229 * 65.45272 * 5 4 2 18 18 C 1.38245 * 119.98408 * 79.72474 * 17 5 4 19 19 C 1.38216 * 120.01095 * 179.72719 * 18 17 5 20 20 C 1.38355 * 119.98505 * 0.54716 * 19 18 17 21 21 Cl 1.73597 * 120.01266 * 179.74793 * 20 19 18 22 22 C 1.38356 * 119.97296 * 359.72525 * 20 19 18 23 23 C 1.38217 * 119.98426 * 0.02562 * 22 20 19 24 24 H 1.09001 * 109.46807 * 302.49408 * 1 2 3 25 25 H 1.09000 * 109.46889 * 62.48660 * 1 2 3 26 26 H 1.08994 * 109.47615 * 182.49140 * 1 2 3 27 27 H 1.08997 * 109.46765 * 239.99777 * 2 1 3 28 28 H 1.09000 * 109.46486 * 180.02562 * 3 2 1 29 29 H 1.08993 * 109.47096 * 299.99606 * 3 2 1 30 30 H 1.08993 * 109.46999 * 60.00233 * 3 2 1 31 31 H 1.08996 * 109.46840 * 305.93052 * 4 2 1 32 32 H 1.09005 * 109.46137 * 185.93519 * 4 2 1 33 33 H 1.00902 * 111.00073 * 321.80159 * 7 5 4 34 34 H 1.09004 * 109.47228 * 294.74355 * 8 7 5 35 35 H 1.08995 * 109.47125 * 54.74294 * 8 7 5 36 36 H 0.96997 * 120.00588 * 179.97438 * 12 11 9 37 37 H 1.07999 * 119.99407 * 359.97438 * 18 17 5 38 38 H 1.08000 * 120.00839 * 180.27143 * 19 18 17 39 39 H 1.07996 * 120.00373 * 179.97438 * 22 20 19 40 40 H 1.08001 * 119.98586 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6553 -2.2003 1.1770 6 1 0.5796 -2.2891 1.0248 7 7 2.0289 -2.8654 2.4324 8 6 0.9694 -2.7216 3.4398 9 6 1.3291 -3.5219 4.6649 10 1 2.2527 -4.0812 4.6926 11 6 0.4798 -3.5394 5.7509 12 7 -0.6441 -2.8573 5.7178 13 14 0.9260 -4.5310 7.2699 14 1 1.7035 -3.6798 8.2059 15 1 -0.3151 -4.9969 7.9391 16 1 1.7444 -5.7046 6.8721 17 6 2.3805 -2.8524 0.0280 18 6 3.7018 -3.2330 0.1717 19 6 4.3658 -3.8361 -0.8798 20 6 3.7112 -4.0487 -2.0800 21 17 4.5465 -4.8003 -3.4033 22 6 2.3906 -3.6625 -2.2250 23 6 1.7262 -3.0641 -1.1711 24 1 -0.3633 0.5521 0.8668 25 1 -0.3633 0.4747 -0.9115 26 1 -0.3634 -1.0266 0.0447 27 1 1.8933 -0.5139 -0.8900 28 1 3.1301 1.4424 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.5925 -0.2724 2.1361 32 1 3.1248 -0.6302 1.3040 33 1 2.9085 -2.5139 2.7801 34 1 0.8651 -1.6707 3.7099 35 1 0.0273 -3.0868 3.0309 36 1 -1.2418 -2.8698 6.4816 37 1 4.2140 -3.0626 1.1071 38 1 5.3966 -4.1374 -0.7660 39 1 1.8793 -3.8279 -3.1618 40 1 0.6952 -2.7630 -1.2841 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411479225.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:47 Heat of formation + Delta-G solvation = -23.025273 kcal Electronic energy + Delta-G solvation = -19759.719747 eV Core-core repulsion = 16791.356067 eV Total energy + Delta-G solvation = -2968.363679 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.76250 -38.46443 -37.17999 -36.13753 -34.52419 -32.11919 -31.91439 -29.37886 -28.06089 -27.64428 -24.79026 -24.05672 -23.12557 -21.82802 -20.61613 -18.72974 -17.93464 -16.98580 -16.41464 -16.37525 -16.10305 -15.52600 -15.29136 -15.01729 -14.43553 -14.32808 -14.27545 -14.17865 -13.72026 -13.57188 -13.17786 -12.99202 -12.78242 -12.76874 -12.54731 -12.35506 -12.25301 -12.12348 -12.04518 -11.72699 -11.70060 -11.46550 -11.38794 -11.22468 -10.63999 -9.89657 -9.45239 -9.03762 -8.20326 -6.30832 0.25933 0.42898 1.21255 1.41616 1.42877 1.54469 2.40776 2.73242 3.12895 3.51777 3.81906 3.88948 3.98927 4.04470 4.06163 4.22389 4.36300 4.46147 4.54973 4.66015 4.78330 4.78572 4.81809 4.90928 5.00074 5.05272 5.07883 5.10423 5.14568 5.26755 5.30031 5.32113 5.39048 5.45583 5.54710 5.62462 5.73854 5.91904 6.06047 6.48778 6.74098 6.90783 7.39892 8.90443 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014754 B = 0.004483 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.396291 B = 6244.561666 C = 7634.909966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.089 4.089 3 C -0.143 4.143 4 C -0.129 4.129 5 C 0.122 3.878 6 H 0.069 0.931 7 N -0.680 5.680 8 C 0.215 3.785 9 C -0.532 4.532 10 H 0.063 0.937 11 C 0.003 3.997 12 N -0.933 5.933 13 Si 0.968 3.032 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.266 1.266 17 C -0.055 4.055 18 C -0.096 4.096 19 C -0.113 4.113 20 C -0.050 4.050 21 Cl -0.075 7.075 22 C -0.110 4.110 23 C -0.110 4.110 24 H 0.041 0.959 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.069 0.931 33 H 0.335 0.665 34 H -0.034 1.034 35 H -0.003 1.003 36 H 0.264 0.736 37 H 0.130 0.870 38 H 0.144 0.856 39 H 0.149 0.851 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.833 3.508 -17.140 19.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.108 4.108 3 C -0.200 4.200 4 C -0.168 4.168 5 C 0.012 3.988 6 H 0.088 0.912 7 N -0.309 5.309 8 C 0.087 3.913 9 C -0.570 4.570 10 H 0.081 0.919 11 C -0.195 4.195 12 N -0.573 5.573 13 Si 0.793 3.207 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.191 1.191 17 C -0.056 4.056 18 C -0.115 4.115 19 C -0.132 4.132 20 C -0.076 4.076 21 Cl -0.046 7.046 22 C -0.128 4.128 23 C -0.128 4.128 24 H 0.061 0.939 25 H 0.090 0.910 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.153 0.847 34 H -0.017 1.017 35 H 0.015 0.985 36 H 0.073 0.927 37 H 0.148 0.852 38 H 0.162 0.838 39 H 0.167 0.833 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.534 2.847 -17.345 19.123 hybrid contribution -0.077 0.428 1.298 1.369 sum 7.457 3.275 -16.047 17.995 Atomic orbital electron populations 1.21902 0.95410 1.01470 1.01837 1.21060 0.95754 0.96517 0.97433 1.21807 1.01028 0.95308 1.01894 1.22257 1.01138 0.94921 0.98530 1.20566 0.98349 0.91186 0.88716 0.91247 1.60635 1.05953 1.59951 1.04352 1.19156 0.89748 0.93024 0.89345 1.21543 1.06278 1.29491 0.99720 0.91912 1.25882 0.94774 0.96773 1.02051 1.70077 1.12063 1.43114 1.32095 0.85400 0.77666 0.78949 0.78690 1.19709 1.20868 1.19063 1.19954 0.94283 0.97101 0.94245 1.20990 0.94246 0.97758 0.98456 1.21177 1.01093 0.99526 0.91368 1.20991 0.94027 1.02453 0.90148 1.98349 1.78281 1.80871 1.47085 1.21158 0.92646 0.98768 1.00265 1.21116 1.00555 0.99083 0.92056 0.93935 0.91012 0.93317 0.90318 0.92444 0.91447 0.93472 0.93728 0.91275 0.84734 1.01683 0.98508 0.92718 0.85208 0.83830 0.83324 0.84389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.03 71.98 0.65 -2.94 16 2 C -0.09 -2.10 2.77 -10.79 -0.03 -2.13 16 3 C -0.14 -2.95 9.19 71.98 0.66 -2.28 16 4 C -0.13 -3.79 4.11 30.59 0.13 -3.66 16 5 C 0.12 4.06 2.15 44.17 0.09 4.15 16 6 H 0.07 2.53 5.74 -2.39 -0.01 2.51 16 7 N -0.68 -27.99 5.66 -499.46 -2.83 -30.82 16 8 C 0.21 11.23 5.26 85.56 0.45 11.68 16 9 C -0.53 -30.03 9.36 25.60 0.24 -29.79 16 10 H 0.06 3.46 7.81 -2.91 -0.02 3.44 16 11 C 0.00 0.19 5.46 84.66 0.46 0.65 16 12 N -0.93 -55.97 13.29 21.45 0.28 -55.68 16 13 Si 0.97 44.18 29.54 68.60 2.03 46.21 16 14 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 15 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 16 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 17 C -0.05 -1.57 4.25 -19.86 -0.08 -1.65 16 18 C -0.10 -2.59 9.31 22.27 0.21 -2.38 16 19 C -0.11 -2.70 9.83 22.29 0.22 -2.48 16 20 C -0.05 -1.15 6.32 22.33 0.14 -1.01 16 21 Cl -0.07 -1.54 28.96 -2.72 -0.08 -1.62 16 22 C -0.11 -2.44 9.83 22.29 0.22 -2.22 16 23 C -0.11 -2.71 8.59 22.26 0.19 -2.52 16 24 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.05 1.26 6.38 -2.39 -0.02 1.24 16 27 H 0.08 1.78 6.42 -2.39 -0.02 1.76 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.04 1.53 7.48 -2.39 -0.02 1.51 16 32 H 0.07 1.89 8.13 -2.38 -0.02 1.87 16 33 H 0.33 12.98 7.91 -89.69 -0.71 12.27 16 34 H -0.03 -1.93 7.52 -2.38 -0.02 -1.95 16 35 H 0.00 -0.18 7.92 -2.39 -0.02 -0.20 16 36 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 37 H 0.13 3.46 7.28 -2.91 -0.02 3.44 16 38 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 39 H 0.15 2.62 8.06 -2.91 -0.02 2.59 16 40 H 0.14 3.05 8.04 -2.91 -0.02 3.02 16 Total: -1.00 -61.75 340.00 3.27 -58.49 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.31 Total: 20.00 kcal Atomic # 6 Polarization: -40.13 SS G_CDS: 3.55 Total: -36.58 kcal Atomic # 7 Polarization: -83.96 SS G_CDS: -2.54 Total: -86.50 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.08 Total: -1.62 kcal Total: -61.75 3.27 -58.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411479225.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.461 kcal (2) G-P(sol) polarization free energy of solvation -61.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds