Wall clock time and date at job start Tue Mar 31 2020 05:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.47103 * 2 1 4 4 C 1.35971 * 116.99805 * 180.02562 * 3 2 1 5 5 C 1.38728 * 119.97377 * 180.02562 * 4 3 2 6 6 C 1.38118 * 120.05499 * 179.97438 * 5 4 3 7 7 C 1.38785 * 120.00491 * 0.03741 * 6 5 4 8 8 N 1.40236 * 120.02287 * 179.97438 * 7 6 5 9 9 C 1.34778 * 119.99779 * 24.81387 * 8 7 6 10 10 O 1.21303 * 120.00017 * 5.53563 * 9 8 7 11 11 C 1.50692 * 120.00232 * 185.52979 * 9 8 7 12 12 C 1.52999 * 109.47497 * 180.02562 * 11 9 8 13 13 C 1.50699 * 109.47031 * 180.02562 * 12 11 9 14 14 H 1.07998 * 120.00289 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99636 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99672 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 120.00133 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47133 * 89.99903 * 17 15 13 19 19 H 1.48503 * 109.47174 * 209.99993 * 17 15 13 20 20 H 1.48504 * 109.46754 * 330.00038 * 17 15 13 21 21 C 1.39027 * 119.95812 * 359.97438 * 7 6 5 22 22 F 1.35103 * 120.03280 * 179.97438 * 21 7 6 23 23 C 1.38282 * 119.94325 * 359.70344 * 21 7 6 24 24 H 1.08999 * 109.46862 * 60.00130 * 1 2 3 25 25 H 1.08995 * 109.47297 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47201 * 300.00693 * 1 2 3 27 27 H 1.09001 * 109.46991 * 240.00031 * 2 1 3 28 28 H 1.09001 * 109.47285 * 119.99562 * 2 1 3 29 29 H 1.08000 * 119.97264 * 359.97438 * 5 4 3 30 30 H 1.08003 * 119.99694 * 180.02562 * 6 5 4 31 31 H 0.96995 * 120.00150 * 204.81772 * 8 7 6 32 32 H 1.09003 * 109.47022 * 300.00389 * 11 9 8 33 33 H 1.09000 * 109.46785 * 60.00004 * 11 9 8 34 34 H 1.09003 * 109.47296 * 300.00213 * 12 11 9 35 35 H 1.09000 * 109.47107 * 60.00192 * 12 11 9 36 36 H 0.97002 * 119.99603 * 180.02562 * 16 15 13 37 37 H 1.07997 * 120.00782 * 180.29529 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3544 1.5254 -0.0005 5 6 3.8841 2.8076 0.0000 6 6 5.2531 2.9905 -0.0001 7 6 6.1001 1.8911 -0.0014 8 7 7.4902 2.0763 -0.0019 9 6 8.0184 3.2151 0.4886 10 8 7.3016 4.0359 1.0214 11 6 9.4995 3.4687 0.3752 12 6 9.8352 4.8215 1.0062 13 6 11.3163 5.0753 0.8922 14 1 11.9543 4.3450 0.4169 15 6 11.8568 6.2399 1.3949 16 7 13.1493 6.4616 1.2950 17 14 10.7534 7.5028 2.2178 18 1 10.6640 7.2101 3.6708 19 1 11.3218 8.8604 2.0203 20 1 9.3970 7.4417 1.6162 21 6 5.5697 0.6060 -0.0021 22 9 6.3929 -0.4653 -0.0039 23 6 4.1988 0.4251 0.0046 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.2254 3.6635 0.0004 30 1 5.6645 3.9891 0.0008 31 1 8.0715 1.3849 -0.3553 32 1 10.0440 2.6805 0.8953 33 1 9.7874 3.4764 -0.6761 34 1 9.2908 5.6100 0.4866 35 1 9.5474 4.8134 2.0575 36 1 13.5296 7.2808 1.6489 37 1 3.7856 -0.5727 0.0089 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412900842.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:47 Heat of formation + Delta-G solvation = -101.439206 kcal Electronic energy + Delta-G solvation = -21009.316505 eV Core-core repulsion = 17473.383072 eV Total energy + Delta-G solvation = -3535.933432 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -49.09349 -40.61082 -39.68415 -37.40493 -34.48424 -33.58858 -32.08100 -31.41531 -30.77713 -28.80491 -26.09686 -24.53785 -22.73510 -22.52931 -21.10178 -19.82253 -18.89065 -17.74461 -17.26002 -16.85637 -16.51338 -16.31146 -15.92017 -15.54217 -15.16351 -14.54593 -14.26062 -14.14062 -13.74834 -13.57851 -13.42035 -13.01444 -12.72345 -12.61692 -12.53528 -12.21412 -11.98237 -11.50008 -11.45435 -11.19561 -11.00052 -10.23714 -10.14506 -10.03943 -9.82570 -9.39981 -9.23616 -9.04258 -8.54331 -7.80886 -6.06202 -4.05661 0.93923 1.07538 2.80211 2.86193 3.11894 3.35744 3.42632 3.51045 3.52000 3.97648 4.43798 4.47654 4.52092 4.62607 4.73564 4.84270 4.88102 5.13681 5.17284 5.28988 5.37890 5.45533 5.60631 5.65600 5.84803 5.89702 5.94145 5.97709 6.08781 6.30898 6.57819 6.71671 7.11057 7.28378 7.35391 7.45372 7.73466 8.31609 8.48623 8.96227 9.56181 11.06478 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.035419 B = 0.003149 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.353712 B = 8888.474533 C = 9568.775717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 O -0.312 6.312 4 C 0.132 3.868 5 C -0.136 4.136 6 C -0.069 4.069 7 C 0.097 3.903 8 N -0.677 5.677 9 C 0.512 3.488 10 O -0.518 6.518 11 C -0.121 4.121 12 C 0.001 3.999 13 C -0.527 4.527 14 H 0.073 0.927 15 C 0.069 3.931 16 N -0.902 5.902 17 Si 0.878 3.122 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.261 1.261 21 C 0.098 3.902 22 F -0.136 7.136 23 C -0.225 4.225 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.140 0.860 30 H 0.165 0.835 31 H 0.413 0.587 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.025 0.975 35 H 0.021 0.979 36 H 0.264 0.736 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.826 -15.018 -4.704 27.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.226 6.226 4 C 0.085 3.915 5 C -0.155 4.155 6 C -0.089 4.089 7 C 0.000 4.000 8 N -0.322 5.322 9 C 0.303 3.697 10 O -0.393 6.393 11 C -0.161 4.161 12 C -0.037 4.037 13 C -0.565 4.565 14 H 0.091 0.909 15 C -0.132 4.132 16 N -0.541 5.541 17 Si 0.705 3.295 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.185 1.185 21 C 0.076 3.924 22 F -0.114 7.114 23 C -0.245 4.245 24 H 0.086 0.914 25 H 0.096 0.904 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.158 0.842 30 H 0.182 0.818 31 H 0.249 0.751 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.043 0.957 35 H 0.039 0.961 36 H 0.073 0.927 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -23.238 -14.147 -4.278 27.540 hybrid contribution 0.121 -0.284 0.303 0.432 sum -23.117 -14.431 -3.976 27.540 Atomic orbital electron populations 1.21773 0.92619 1.02879 1.03633 1.22816 0.95998 0.82018 1.01518 1.86114 1.18469 1.29222 1.88754 1.18626 0.82214 0.93305 0.97312 1.20456 0.94753 0.94963 1.05340 1.21291 0.91317 0.99810 0.96445 1.17824 0.84924 0.91998 1.05219 1.43803 1.04238 1.21608 1.62592 1.21847 0.92591 0.79620 0.75673 1.90616 1.62430 1.44946 1.41275 1.21727 0.87437 1.03040 1.03856 1.19393 0.97356 0.90701 0.96205 1.21078 0.90950 1.05308 1.39148 0.90860 1.24979 0.94882 0.97983 0.95396 1.69911 1.11155 1.26451 1.46538 0.86788 0.81751 0.80637 0.80320 1.20225 1.21413 1.18512 1.17042 0.87549 0.81785 1.06044 1.91479 1.71821 1.54000 1.94137 1.20898 0.91679 0.99747 1.12173 0.91444 0.90361 0.91432 0.91937 0.91933 0.84189 0.81751 0.75111 0.89121 0.88938 0.95653 0.96115 0.92657 0.84157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 10.28 37.16 0.38 -0.41 16 2 C 0.05 0.36 5.46 37.16 0.20 0.56 16 3 O -0.31 -3.23 10.14 -19.65 -0.20 -3.43 16 4 C 0.13 1.51 6.69 -39.23 -0.26 1.25 16 5 C -0.14 -1.65 9.98 -39.44 -0.39 -2.05 16 6 C -0.07 -0.96 8.72 -39.42 -0.34 -1.31 16 7 C 0.10 1.36 6.44 -83.52 -0.54 0.82 16 8 N -0.68 -9.54 5.32 -9.77 -0.05 -9.60 16 9 C 0.51 8.95 7.64 -10.99 -0.08 8.86 16 10 O -0.52 -10.62 13.15 5.54 0.07 -10.55 16 11 C -0.12 -2.23 5.64 -27.89 -0.16 -2.39 16 12 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 13 C -0.53 -14.79 9.66 -34.44 -0.33 -15.12 16 14 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 15 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 16 N -0.90 -27.69 13.96 55.43 0.77 -26.91 16 17 Si 0.88 22.23 27.47 -169.99 -4.67 17.56 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.26 -6.51 6.54 56.52 0.37 -6.14 16 21 C 0.10 1.23 7.30 -39.27 -0.29 0.95 16 22 F -0.14 -1.67 16.81 2.25 0.04 -1.64 16 23 C -0.22 -2.47 9.01 -39.40 -0.35 -2.83 16 24 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.38 7.67 -51.93 -0.40 -0.02 16 28 H 0.06 0.39 7.65 -51.93 -0.40 0.00 16 29 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.17 2.57 5.78 -52.48 -0.30 2.27 16 31 H 0.41 4.69 8.45 -40.82 -0.35 4.35 16 32 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 33 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 34 H 0.03 0.63 7.16 -51.93 -0.37 0.26 16 35 H 0.02 0.51 7.53 -51.93 -0.39 0.12 16 36 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.14 1.20 6.29 -52.49 -0.33 0.87 16 LS Contribution 318.80 15.07 4.80 4.80 Total: -1.00 -32.87 318.80 -6.25 -39.12 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -4.66 Total: 0.43 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -2.36 Total: -9.79 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.72 Total: -36.51 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.13 Total: -13.97 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.67 Total: 17.56 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.87 -6.25 -39.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412900842.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.318 kcal (2) G-P(sol) polarization free energy of solvation -32.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds