Wall clock time and date at job start Tue Mar 31 2020 06:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47116 * 2 1 4 4 C 1.50693 * 109.47213 * 240.00047 * 2 1 3 5 5 H 1.08004 * 119.99952 * 240.00053 * 4 2 1 6 6 C 1.37882 * 120.00480 * 60.00181 * 4 2 1 7 7 N 1.31518 * 119.99339 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00082 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47179 * 90.00213 * 8 6 4 10 10 H 1.48497 * 109.46880 * 209.99629 * 8 6 4 11 11 H 1.48498 * 109.47330 * 329.99671 * 8 6 4 12 12 C 1.52997 * 109.47084 * 119.99419 * 2 1 3 13 13 N 1.46500 * 109.47433 * 300.00398 * 12 2 1 14 14 C 1.36960 * 119.99974 * 179.97438 * 13 12 2 15 15 N 1.31571 * 119.41927 * 180.02562 * 14 13 12 16 16 C 1.33403 * 121.90590 * 179.97438 * 15 14 13 17 17 C 1.35885 * 120.55568 * 0.25822 * 16 15 14 18 18 N 1.48000 * 120.58584 * 179.73857 * 17 16 15 19 19 O 1.21796 * 120.00368 * 359.97438 * 18 17 16 20 20 O 1.21808 * 119.99696 * 179.97438 * 18 17 16 21 21 C 1.41666 * 118.82017 * 359.50556 * 17 16 15 22 22 N 1.31553 * 120.86662 * 180.21862 * 21 17 16 23 23 N 1.36354 * 119.42111 * 359.97438 * 14 13 12 24 24 H 0.97003 * 120.35685 * 0.02562 * 23 14 13 25 25 H 1.08997 * 109.47265 * 300.00755 * 1 2 3 26 26 H 1.08999 * 109.46943 * 59.99986 * 1 2 3 27 27 H 1.08994 * 109.47108 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47309 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47225 * 299.99841 * 3 2 1 30 30 H 1.09007 * 109.46961 * 59.99686 * 3 2 1 31 31 H 0.97002 * 119.99113 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.47277 * 179.97438 * 12 2 1 33 33 H 1.09003 * 109.46615 * 59.99985 * 12 2 1 34 34 H 0.97001 * 119.99986 * 0.02562 * 13 12 2 35 35 H 1.08002 * 119.71899 * 179.97438 * 16 15 14 36 36 H 0.96995 * 120.00361 * 180.26752 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2393 -2.4828 7 7 0.9429 0.8297 -2.6034 8 14 2.3227 -1.1195 -4.0079 9 1 1.3450 -2.1616 -4.4124 10 1 2.4875 -0.1402 -5.1119 11 1 3.6311 -1.7565 -3.7118 12 6 2.0400 -0.7211 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8821 -0.4987 3.6894 15 7 1.4368 0.1301 4.7559 16 6 1.7276 -0.2828 5.9906 17 6 2.5078 -1.3779 6.1870 18 7 2.8356 -1.8333 7.5565 19 8 2.4054 -1.2248 8.5199 20 8 3.5355 -2.8166 7.7201 21 6 2.9977 -2.0788 5.0575 22 7 3.7527 -3.1465 5.2010 23 7 2.6659 -1.6088 3.8008 24 1 2.9875 -2.0636 3.0066 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 0.7083 1.1608 -3.4845 32 1 3.1300 -0.7215 1.2491 33 1 1.6766 -1.7488 1.2493 34 1 0.9936 0.7579 2.3564 35 1 1.3434 0.2605 6.8413 36 1 4.0846 -3.6146 4.4190 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413405062.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:30 Heat of formation + Delta-G solvation = 60.694854 kcal Electronic energy + Delta-G solvation = -21839.905964 eV Core-core repulsion = 18363.215905 eV Total energy + Delta-G solvation = -3476.690059 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.90081 -41.01338 -37.89923 -36.23286 -35.56242 -35.07696 -32.68528 -31.24372 -30.36161 -26.90335 -26.13910 -25.78448 -24.84901 -24.13519 -22.60209 -19.74486 -19.60328 -18.86124 -18.32694 -17.52301 -17.07324 -16.90782 -16.34365 -15.96414 -15.86281 -15.04106 -14.61189 -14.08502 -13.62255 -13.26404 -12.69801 -12.44357 -11.93388 -11.58481 -11.43017 -11.12714 -11.10631 -11.00592 -10.98939 -10.77409 -10.59737 -10.52869 -10.46690 -10.06714 -9.93145 -9.81890 -9.28262 -9.23435 -8.71778 -8.11866 -6.36403 -4.50058 0.07791 1.46557 1.63400 1.72375 2.27654 2.81997 3.05962 3.15033 3.16608 3.25310 3.99883 4.09571 4.13651 4.74832 4.91275 5.14286 5.18905 5.36743 5.39777 5.70997 5.78932 6.04082 6.29220 6.40294 6.43553 6.55343 6.62026 6.83909 6.91151 7.02315 7.12193 7.34724 7.57866 7.61104 7.71996 7.91684 7.96367 8.24724 8.49121 9.18718 10.64983 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.037013 B = 0.003589 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.301626 B = 7799.339716 C = 8364.568586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.064 3.936 3 C -0.137 4.137 4 C -0.520 4.520 5 H 0.059 0.941 6 C 0.071 3.929 7 N -0.879 5.879 8 Si 0.897 3.103 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.274 1.274 12 C 0.103 3.897 13 N -0.655 5.655 14 C 0.665 3.335 15 N -0.603 5.603 16 C 0.303 3.697 17 C -0.228 4.228 18 N 0.072 4.928 19 O -0.229 6.229 20 O -0.138 6.138 21 C 0.453 3.547 22 N -0.699 5.699 23 N -0.669 5.669 24 H 0.422 0.578 25 H 0.009 0.991 26 H 0.092 0.908 27 H 0.030 0.970 28 H 0.030 0.970 29 H 0.092 0.908 30 H 0.009 0.991 31 H 0.265 0.735 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.433 0.567 35 H 0.188 0.812 36 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.188 -0.283 7.129 7.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.063 3.937 3 C -0.194 4.194 4 C -0.558 4.558 5 H 0.077 0.923 6 C -0.132 4.132 7 N -0.516 5.516 8 Si 0.725 3.275 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 C -0.019 4.019 13 N -0.285 5.285 14 C 0.309 3.691 15 N -0.339 5.339 16 C 0.147 3.853 17 C -0.329 4.329 18 N 0.581 4.419 19 O -0.424 6.424 20 O -0.359 6.359 21 C 0.178 3.822 22 N -0.330 5.330 23 N -0.308 5.308 24 H 0.263 0.737 25 H 0.028 0.972 26 H 0.110 0.890 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.110 0.890 30 H 0.028 0.972 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.275 0.725 35 H 0.205 0.795 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.123 0.162 7.014 7.016 hybrid contribution 0.722 -1.041 -2.004 2.371 sum 0.599 -0.879 5.009 5.121 Atomic orbital electron populations 1.21900 0.97082 0.99609 1.00840 1.18337 0.93262 0.92944 0.89166 1.21899 0.98829 0.97866 1.00835 1.20825 1.32816 1.12629 0.89573 0.92301 1.24869 0.94479 0.94760 0.99071 1.69774 1.35673 1.22285 1.23896 0.86504 0.79299 0.79436 0.82285 1.20497 1.20994 1.19842 1.22453 0.98864 0.96743 0.83812 1.45355 1.50484 1.31564 1.01146 1.19731 0.80411 0.80113 0.88833 1.68571 1.35494 1.33940 0.95935 1.22228 0.81882 0.86470 0.94682 1.20393 1.22434 1.07700 0.82416 1.42575 0.98433 0.99602 1.01295 1.94474 1.58369 1.58211 1.31307 1.94582 1.33742 1.15560 1.91985 1.18993 0.91370 0.90712 0.81096 1.70938 1.18133 1.08386 1.35510 1.44755 1.48450 1.27270 1.10345 0.73725 0.97167 0.88971 0.95106 0.95095 0.88981 0.97157 0.92507 0.91260 0.91273 0.72474 0.79477 0.84683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 8.08 37.16 0.30 -2.23 16 2 C 0.06 1.16 0.50 -155.66 -0.08 1.08 16 3 C -0.14 -2.53 8.08 37.16 0.30 -2.23 16 4 C -0.52 -11.27 8.01 -34.44 -0.28 -11.55 16 5 H 0.06 1.26 7.74 -52.48 -0.41 0.85 16 6 C 0.07 1.63 5.15 -17.82 -0.09 1.54 16 7 N -0.88 -20.73 9.35 55.43 0.52 -20.21 16 8 Si 0.90 18.35 29.54 -169.99 -5.02 13.33 16 9 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 10 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 11 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 12 C 0.10 1.44 3.84 -4.04 -0.02 1.42 16 13 N -0.66 -8.01 5.05 -61.95 -0.31 -8.32 16 14 C 0.67 8.09 8.48 -320.89 -2.72 5.36 16 15 N -0.60 -7.48 10.38 -14.01 -0.15 -7.63 16 16 C 0.30 3.69 10.69 -17.71 -0.19 3.50 16 17 C -0.23 -3.33 6.90 -79.49 -0.55 -3.88 16 18 N 0.07 1.21 4.45 34.18 0.15 1.36 16 19 O -0.23 -3.78 18.46 -29.46 -0.54 -4.32 16 20 O -0.14 -2.54 17.37 -29.46 -0.51 -3.06 16 21 C 0.45 6.33 7.83 -155.53 -1.22 5.11 16 22 N -0.70 -10.30 12.24 31.36 0.38 -9.92 16 23 N -0.67 -7.71 5.36 -12.69 -0.07 -7.78 16 24 H 0.42 4.07 7.21 -40.82 -0.29 3.78 16 25 H 0.01 0.15 6.86 -51.93 -0.36 -0.20 16 26 H 0.09 1.99 6.07 -51.93 -0.32 1.67 16 27 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.09 1.98 6.07 -51.93 -0.32 1.67 16 30 H 0.01 0.15 6.86 -51.93 -0.36 -0.20 16 31 H 0.26 6.10 8.31 -40.82 -0.34 5.77 16 32 H 0.07 0.92 7.97 -51.93 -0.41 0.50 16 33 H 0.07 0.92 7.97 -51.93 -0.41 0.50 16 34 H 0.43 5.33 6.27 -40.82 -0.26 5.08 16 35 H 0.19 1.81 7.59 -52.49 -0.40 1.41 16 36 H 0.34 4.10 8.89 -40.82 -0.36 3.73 16 LS Contribution 305.19 15.07 4.60 4.60 Total: -1.00 -25.68 305.19 -9.36 -35.03 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -3.87 Total: 8.77 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -4.54 Total: -1.86 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 0.53 Total: -52.49 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -1.06 Total: -7.38 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.02 Total: 13.33 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -25.68 -9.36 -35.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413405062.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.728 kcal (2) G-P(sol) polarization free energy of solvation -25.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds