Wall clock time and date at job start Tue Mar 31 2020 05:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42906 * 109.46752 * 2 1 4 4 C 1.34936 * 116.99672 * 180.02562 * 3 2 1 5 5 O 1.21665 * 120.00010 * 0.02562 * 4 3 2 6 6 C 1.46187 * 119.99922 * 180.02562 * 4 3 2 7 7 C 1.37846 * 126.90594 * 179.68845 * 6 4 3 8 8 N 1.33122 * 107.81140 * 179.88811 * 7 6 4 9 9 C 1.31636 * 109.83551 * 0.37935 * 8 7 6 10 10 N 1.38246 * 125.39584 * 179.79580 * 9 8 7 11 11 C 1.34771 * 120.00246 * 179.97438 * 10 9 8 12 12 O 1.21261 * 120.00071 * 0.02562 * 11 10 9 13 13 C 1.50702 * 120.00151 * 179.97438 * 11 10 9 14 14 C 1.52996 * 109.47083 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.47083 * 179.97438 * 14 13 11 16 16 H 1.07998 * 119.99852 * 0.02562 * 15 14 13 17 17 C 1.37882 * 120.00046 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00159 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99837 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47046 * 90.00520 * 19 17 15 21 21 H 1.48501 * 109.46655 * 210.00000 * 19 17 15 22 22 H 1.48502 * 109.47166 * 330.00223 * 19 17 15 23 23 N 1.35026 * 109.21180 * 359.76227 * 9 8 7 24 24 H 0.97000 * 126.52492 * 180.02562 * 23 9 8 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99753 * 1 2 3 27 27 H 1.09001 * 109.46801 * 59.99865 * 1 2 3 28 28 H 1.08993 * 109.46955 * 120.00418 * 2 1 3 29 29 H 1.09000 * 109.47050 * 240.00247 * 2 1 3 30 30 H 1.08008 * 126.09145 * 0.02562 * 7 6 4 31 31 H 0.97002 * 119.99908 * 359.95679 * 10 9 8 32 32 H 1.08991 * 109.47340 * 300.00247 * 13 11 10 33 33 H 1.09000 * 109.46738 * 60.00264 * 13 11 10 34 34 H 1.09003 * 109.47513 * 300.00077 * 14 13 11 35 35 H 1.09000 * 109.47162 * 60.00470 * 14 13 11 36 36 H 0.96996 * 120.00257 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3441 1.5242 -0.0005 5 8 4.0852 0.5593 -0.0015 6 6 3.9028 2.8751 0.0000 7 6 5.2377 3.2187 0.0056 8 7 5.3161 4.5476 0.0015 9 6 4.1063 5.0664 0.0018 10 7 3.8145 6.4177 0.0023 11 6 2.5315 6.8301 0.0021 12 8 1.6329 6.0159 0.0020 13 6 2.2134 8.3032 0.0031 14 6 0.6958 8.4973 0.0033 15 6 0.3778 9.9704 0.0050 16 1 1.1781 10.6956 0.0055 17 6 -0.9349 10.3923 0.0050 18 7 -1.9094 9.5092 0.0039 19 14 -1.3290 12.2183 0.0063 20 1 -1.4332 12.7032 -1.3934 21 1 -2.6189 12.4456 0.7062 22 1 -0.2485 12.9574 0.7073 23 7 3.1954 4.0697 0.0009 24 1 2.2306 4.1694 0.0006 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 6.0714 2.5321 0.0100 31 1 4.5333 7.0691 0.0030 32 1 2.6387 8.7661 0.8936 33 1 2.6394 8.7675 -0.8863 34 1 0.2701 8.0343 -0.8870 35 1 0.2703 8.0332 0.8930 36 1 -2.8329 9.8060 0.0042 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415645180.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:26 Heat of formation + Delta-G solvation = -73.603300 kcal Electronic energy + Delta-G solvation = -21056.935224 eV Core-core repulsion = 17542.128809 eV Total energy + Delta-G solvation = -3514.806415 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.43107 -40.44419 -39.59973 -36.85428 -34.98643 -33.75733 -32.88844 -31.85877 -31.30426 -29.28679 -26.21744 -24.75270 -23.13869 -22.30379 -21.32260 -21.11610 -20.11752 -18.93086 -17.63633 -17.24892 -16.91307 -16.41959 -16.03769 -15.94735 -15.36651 -14.90098 -14.54672 -14.08880 -14.00127 -13.79176 -13.73200 -13.00990 -12.78274 -12.33925 -12.20867 -11.83254 -11.41908 -11.04968 -11.02621 -10.93342 -10.72923 -10.71196 -10.45610 -10.35748 -10.20186 -10.11746 -9.67560 -9.27966 -8.46677 -8.20073 -6.10194 -4.15641 0.91317 2.15539 2.21649 2.49638 2.83384 3.10142 3.18373 3.25588 3.32635 3.34606 4.35976 4.56971 4.70497 4.70519 4.79924 4.86607 5.02896 5.15150 5.25684 5.41468 5.51984 5.55768 5.76902 5.80610 5.88730 5.92530 6.20452 6.24656 6.53927 6.93860 7.26306 7.55282 7.55854 7.61083 7.78673 7.87641 7.93769 8.23635 8.91319 9.49272 11.00590 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.021376 B = 0.003347 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.582166 B = 8363.050548 C = 9641.581371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.064 3.936 3 O -0.354 6.354 4 C 0.551 3.449 5 O -0.504 6.504 6 C -0.106 4.106 7 C 0.114 3.886 8 N -0.520 5.520 9 C 0.486 3.514 10 N -0.637 5.637 11 C 0.520 3.480 12 O -0.518 6.518 13 C -0.124 4.124 14 C 0.035 3.965 15 C -0.531 4.531 16 H 0.058 0.942 17 C 0.060 3.940 18 N -0.888 5.888 19 Si 0.895 3.105 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 N -0.533 5.533 24 H 0.443 0.557 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.193 0.807 31 H 0.434 0.566 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.324 -13.869 0.010 17.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.010 4.010 3 O -0.271 6.271 4 C 0.397 3.603 5 O -0.393 6.393 6 C -0.220 4.220 7 C -0.043 4.043 8 N -0.246 5.246 9 C 0.133 3.867 10 N -0.291 5.291 11 C 0.310 3.690 12 O -0.391 6.391 13 C -0.164 4.164 14 C -0.002 4.002 15 C -0.570 4.570 16 H 0.077 0.923 17 C -0.143 4.143 18 N -0.527 5.527 19 Si 0.723 3.277 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 N -0.151 5.151 24 H 0.292 0.708 25 H 0.099 0.901 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.210 0.790 31 H 0.274 0.726 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.234 -14.265 0.011 17.557 hybrid contribution -1.101 0.717 -0.011 1.313 sum 9.134 -13.549 0.000 16.340 Atomic orbital electron populations 1.21837 0.92343 1.03018 1.03948 1.22683 0.95615 0.80169 1.02550 1.86212 1.23737 1.32791 1.84327 1.19344 0.80577 0.87434 0.72979 1.90904 1.60309 1.40618 1.47423 1.20089 0.92669 0.83722 1.25507 1.22812 0.93488 0.90920 0.97077 1.70307 1.18839 1.08797 1.26704 1.19504 0.85096 0.83376 0.98767 1.43143 1.10948 1.01887 1.73140 1.22308 0.79441 0.94447 0.72801 1.90484 1.45486 1.55613 1.47481 1.21981 1.04604 0.85925 1.03859 1.18968 0.85307 0.97023 0.98922 1.21143 0.92141 0.91568 1.52114 0.92339 1.25019 0.96434 0.97794 0.95014 1.69978 0.99468 1.33506 1.49703 0.86552 0.77876 0.85142 0.78167 1.20584 1.21165 1.19782 1.43748 1.11993 1.04089 1.55258 0.70778 0.90145 0.91269 0.91276 0.91294 0.91295 0.78984 0.72618 0.88801 0.88807 0.95561 0.95551 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 37.16 0.38 -0.87 16 2 C 0.06 0.64 6.10 37.16 0.23 0.87 16 3 O -0.35 -4.62 10.12 -41.14 -0.42 -5.04 16 4 C 0.55 7.64 7.91 33.92 0.27 7.91 16 5 O -0.50 -7.47 16.68 -19.39 -0.32 -7.79 16 6 C -0.11 -1.47 7.17 -81.64 -0.59 -2.06 16 7 C 0.11 1.46 11.70 -17.14 -0.20 1.26 16 8 N -0.52 -7.19 11.22 -13.58 -0.15 -7.34 16 9 C 0.49 7.00 8.72 -320.79 -2.80 4.20 16 10 N -0.64 -8.24 5.37 -12.83 -0.07 -8.31 16 11 C 0.52 8.43 7.79 -10.99 -0.09 8.34 16 12 O -0.52 -10.10 13.42 5.57 0.07 -10.03 16 13 C -0.12 -2.12 5.64 -27.88 -0.16 -2.27 16 14 C 0.04 0.86 4.26 -27.88 -0.12 0.74 16 15 C -0.53 -13.99 9.11 -34.44 -0.31 -14.30 16 16 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 19 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 N -0.53 -7.93 5.83 -9.93 -0.06 -7.98 16 24 H 0.44 7.03 6.36 -40.82 -0.26 6.77 16 25 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 29 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 30 H 0.19 1.90 8.06 -52.48 -0.42 1.47 16 31 H 0.43 4.15 8.82 -40.82 -0.36 3.79 16 32 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 34 H 0.03 0.70 8.10 -51.93 -0.42 0.28 16 35 H 0.03 0.70 8.10 -51.93 -0.42 0.28 16 36 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 323.37 15.07 4.87 4.87 Total: -1.00 -32.23 323.37 -8.22 -40.44 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -4.38 Total: 5.45 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: -3.48 Total: 5.35 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: 0.46 Total: -48.90 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.67 Total: -22.86 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.23 -8.22 -40.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415645180.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.160 kcal (2) G-P(sol) polarization free energy of solvation -32.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds