Wall clock time and date at job start Tue Mar 31 2020 05:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47320 * 2 1 4 4 C 1.46499 * 119.99537 * 269.99999 * 3 2 1 5 5 C 1.50697 * 109.46949 * 269.99553 * 4 3 2 6 6 H 1.08004 * 120.00186 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00081 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00096 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00103 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47135 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47061 * 119.99902 * 9 7 5 12 12 H 1.48503 * 109.47075 * 240.00004 * 9 7 5 13 13 C 1.34777 * 120.00264 * 89.99349 * 3 2 1 14 14 O 1.21283 * 119.99750 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99928 * 0.28128 * 13 3 2 16 16 C 1.50700 * 109.46869 * 179.72354 * 15 13 3 17 17 C 1.38264 * 119.93461 * 269.72057 * 16 15 13 18 18 C 1.38179 * 120.09375 * 179.77027 * 17 16 15 19 19 C 1.38655 * 119.96828 * 0.50833 * 18 17 16 20 20 O 1.35961 * 120.06527 * 179.72648 * 19 18 17 21 21 C 1.38908 * 119.87626 * 359.74529 * 19 18 17 22 22 F 1.35102 * 120.04855 * 179.97438 * 21 19 18 23 23 C 1.38250 * 119.93793 * 90.00078 * 16 15 13 24 24 H 1.09004 * 109.46895 * 60.00075 * 1 2 3 25 25 H 1.08992 * 109.47180 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47106 * 300.00561 * 1 2 3 27 27 H 1.08994 * 109.47354 * 239.99891 * 2 1 3 28 28 H 1.09001 * 109.47139 * 119.99465 * 2 1 3 29 29 H 1.09001 * 109.47567 * 29.99407 * 4 3 2 30 30 H 1.09005 * 109.47076 * 149.99913 * 4 3 2 31 31 H 0.96991 * 119.99957 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.46965 * 299.72211 * 15 13 3 33 33 H 1.08994 * 109.46990 * 59.72065 * 15 13 3 34 34 H 1.08002 * 119.95263 * 0.02562 * 17 16 15 35 35 H 1.07997 * 120.01636 * 180.25143 * 18 17 16 36 36 H 0.96703 * 113.99576 * 270.02356 * 20 19 18 37 37 H 1.08005 * 119.98588 * 359.95352 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1495 2.3903 -2.8775 8 7 3.3498 3.1272 -3.6172 9 14 5.9135 2.0962 -3.4170 10 1 6.6009 1.2403 -2.4169 11 1 5.9206 1.4179 -4.7380 12 1 6.6217 3.3970 -3.5247 13 6 2.2429 2.0167 1.1672 14 8 2.6468 3.1603 1.1671 15 6 1.9977 1.3042 2.4723 16 6 2.3292 2.2258 3.6176 17 6 3.6092 2.2442 4.1401 18 6 3.9181 3.0913 5.1872 19 6 2.9405 3.9167 5.7218 20 8 3.2409 4.7469 6.7557 21 6 1.6537 3.8934 5.1994 22 9 0.6984 4.6957 5.7180 23 6 1.3515 3.0470 4.1477 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.5818 1.6876 -2.0285 30 1 2.0956 3.1410 -1.1385 31 1 3.6759 3.5175 -4.4431 32 1 0.9499 1.0100 2.5343 33 1 2.6281 0.4167 2.5258 34 1 4.3698 1.5985 3.7266 35 1 4.9193 3.1076 5.5916 36 1 3.1064 4.3528 7.6285 37 1 0.3514 3.0281 3.7403 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448769031.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:44 Heat of formation + Delta-G solvation = -103.514859 kcal Electronic energy + Delta-G solvation = -21666.101387 eV Core-core repulsion = 18130.077947 eV Total energy + Delta-G solvation = -3536.023439 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.86424 -39.90692 -38.85341 -36.95353 -35.27048 -32.90796 -31.85801 -30.65072 -30.10720 -27.92189 -26.24360 -23.13660 -23.06381 -22.80652 -21.54178 -18.70440 -18.42012 -16.95856 -16.77526 -16.56579 -16.30172 -15.97965 -15.48289 -15.10489 -14.59315 -14.29171 -14.03886 -13.93323 -13.43359 -13.37349 -13.13471 -12.73276 -12.28547 -12.10432 -11.92528 -11.67692 -11.65600 -11.44593 -11.17420 -10.90707 -10.73852 -10.67931 -10.53780 -10.14056 -9.62966 -9.08337 -8.88135 -8.46679 -8.43920 -7.68436 -6.05201 -4.09935 1.01220 1.15086 3.28886 3.33849 3.37069 3.38948 3.42127 3.85859 4.01151 4.27084 4.44128 4.62812 4.75233 5.11457 5.16076 5.19491 5.29375 5.31215 5.39656 5.53733 5.61298 5.71291 5.77196 5.91983 6.00007 6.02241 6.12966 6.20705 6.45571 6.46870 6.68256 7.05221 7.43912 7.45240 7.53217 7.91242 8.22564 8.39686 8.89199 9.07333 9.55309 11.02981 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.019086 B = 0.004348 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.694096 B = 6438.019316 C = 7182.312074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 N -0.597 5.597 4 C 0.246 3.754 5 C -0.525 4.525 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.506 3.494 14 O -0.532 6.532 15 C -0.107 4.107 16 C -0.032 4.032 17 C -0.099 4.099 18 C -0.114 4.114 19 C 0.064 3.936 20 O -0.489 6.489 21 C 0.074 3.926 22 F -0.136 7.136 23 C -0.127 4.127 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.032 0.968 30 H 0.043 0.957 31 H 0.263 0.737 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.387 0.613 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.362 -7.303 17.429 19.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.329 5.329 4 C 0.127 3.873 5 C -0.564 4.564 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.292 3.708 14 O -0.409 6.409 15 C -0.147 4.147 16 C -0.032 4.032 17 C -0.117 4.117 18 C -0.132 4.132 19 C 0.019 3.981 20 O -0.298 6.298 21 C 0.055 3.945 22 F -0.115 7.115 23 C -0.146 4.146 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.152 0.848 35 H 0.155 0.845 36 H 0.242 0.758 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.052 -6.148 16.799 18.341 hybrid contribution 0.652 -0.292 -0.033 0.715 sum -3.400 -6.439 16.766 18.279 Atomic orbital electron populations 1.22228 0.96820 1.01432 1.02341 1.21432 0.93495 0.84227 1.02733 1.48262 1.63782 1.13239 1.07653 1.19276 0.96283 0.93665 0.78088 1.21464 0.96914 1.31813 1.06235 0.92432 1.24940 0.97830 0.94920 0.96430 1.69941 1.35612 1.33449 1.14354 0.86453 0.84664 0.78063 0.78294 1.19820 1.20971 1.20882 1.20089 0.79007 0.87030 0.84703 1.90716 1.45245 1.17913 1.87053 1.20836 1.04051 0.98295 0.91556 1.19261 0.93114 0.96051 0.94793 1.20988 0.96003 0.99080 0.95608 1.21241 0.99245 0.94896 0.97865 1.18388 0.90975 0.95015 0.93772 1.84908 1.88993 1.39908 1.15983 1.18002 0.85465 0.93772 0.97307 1.91478 1.62690 1.71455 1.85872 1.20902 1.01252 0.96509 0.95893 0.92023 0.92141 0.93090 0.89913 0.91672 0.95017 0.93915 0.92770 0.88279 0.87989 0.84833 0.84451 0.75792 0.84497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 10.24 37.16 0.38 -1.73 16 2 C 0.11 1.57 5.94 -4.04 -0.02 1.54 16 3 N -0.60 -12.09 2.46 -175.06 -0.43 -12.52 16 4 C 0.25 6.34 5.16 -5.20 -0.03 6.31 16 5 C -0.53 -14.73 9.39 -34.44 -0.32 -15.05 16 6 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 9 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.51 10.05 7.67 -10.98 -0.08 9.97 16 14 O -0.53 -13.27 15.61 5.55 0.09 -13.18 16 15 C -0.11 -1.46 4.38 -29.03 -0.13 -1.58 16 16 C -0.03 -0.44 4.37 -104.61 -0.46 -0.90 16 17 C -0.10 -1.29 9.69 -39.59 -0.38 -1.67 16 18 C -0.11 -1.40 9.98 -39.45 -0.39 -1.79 16 19 C 0.06 0.85 6.71 -39.18 -0.26 0.59 16 20 O -0.49 -5.75 13.37 -19.62 -0.26 -6.01 16 21 C 0.07 1.06 7.31 -39.30 -0.29 0.78 16 22 F -0.14 -2.01 17.11 2.25 0.04 -1.97 16 23 C -0.13 -1.78 9.67 -39.54 -0.38 -2.16 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.59 7.24 -51.93 -0.38 0.21 16 27 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 28 H 0.06 0.77 6.43 -51.93 -0.33 0.43 16 29 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 30 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.10 1.08 7.16 -51.93 -0.37 0.71 16 33 H 0.10 1.13 7.34 -51.93 -0.38 0.75 16 34 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.14 1.36 8.06 -52.49 -0.42 0.93 16 36 H 0.39 2.41 9.06 45.56 0.41 2.82 16 37 H 0.14 1.73 8.06 -52.48 -0.42 1.31 16 LS Contribution 326.04 15.07 4.91 4.91 Total: -1.00 -35.22 326.04 -6.34 -41.56 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -3.93 Total: 0.38 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -2.47 Total: -4.08 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.31 Total: -38.36 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.18 Total: -19.19 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.22 -6.34 -41.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448769031.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.955 kcal (2) G-P(sol) polarization free energy of solvation -35.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds