Wall clock time and date at job start Tue Mar 31 2020 05:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.47194 * 2 1 4 4 O 1.42897 * 109.47347 * 239.99341 * 2 1 3 5 5 C 1.42904 * 113.99570 * 90.00661 * 4 2 1 6 6 C 1.50699 * 109.47157 * 180.02562 * 5 4 2 7 7 C 1.38242 * 119.97442 * 269.72415 * 6 5 4 8 8 C 1.38195 * 120.02798 * 179.72388 * 7 6 5 9 9 C 1.38465 * 119.97149 * 0.57059 * 8 7 6 10 10 F 1.35102 * 120.02294 * 179.68153 * 9 8 7 11 11 C 1.38460 * 119.94835 * 359.70422 * 9 8 7 12 12 C 1.38199 * 119.97121 * 359.97438 * 11 9 8 13 13 C 1.50706 * 109.46652 * 119.99565 * 2 1 3 14 14 O 1.21283 * 119.99503 * 115.00107 * 13 2 1 15 15 N 1.34773 * 120.00081 * 294.72834 * 13 2 1 16 16 C 1.46506 * 119.99968 * 180.02562 * 15 13 2 17 17 C 1.50690 * 109.47072 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00210 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99820 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00036 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 120.00010 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47177 * 59.99528 * 21 19 17 23 23 H 1.48496 * 109.46992 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46935 * 299.99881 * 21 19 17 25 25 H 1.09002 * 109.46726 * 60.00304 * 1 2 3 26 26 H 1.08996 * 109.46859 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47302 * 300.00814 * 1 2 3 28 28 H 1.09005 * 109.47264 * 299.99548 * 5 4 2 29 29 H 1.09000 * 109.47599 * 59.99531 * 5 4 2 30 30 H 1.08005 * 119.98282 * 359.97438 * 7 6 5 31 31 H 1.08005 * 120.01358 * 180.25379 * 8 7 6 32 32 H 1.07994 * 120.01027 * 179.97438 * 11 9 8 33 33 H 1.08004 * 119.98042 * 180.02562 * 12 11 9 34 34 H 0.96998 * 120.00525 * 359.97438 * 15 13 2 35 35 H 1.09004 * 109.46587 * 299.99661 * 16 15 13 36 36 H 1.08998 * 109.47213 * 59.99069 * 16 15 13 37 37 H 0.97005 * 119.99861 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2003 0.1828 -2.2940 6 6 2.7005 -0.6285 -3.4612 7 6 4.0591 -0.7965 -3.6540 8 6 4.5189 -1.5451 -4.7207 9 6 3.6185 -2.1171 -5.6035 10 9 4.0670 -2.8438 -6.6504 11 6 2.2581 -1.9435 -5.4127 12 6 1.8006 -1.2000 -4.3414 13 6 2.0323 -0.7104 1.2306 14 8 2.6529 -1.7467 1.1216 15 7 1.7965 -0.1912 2.4518 16 6 2.2853 -0.8815 3.6480 17 6 1.8928 -0.0994 4.8748 18 1 1.3354 0.8201 4.7737 19 6 2.2452 -0.5578 6.1265 20 7 2.9235 -1.6777 6.2498 21 14 1.7581 0.4113 7.6474 22 1 0.2786 0.5238 7.7099 23 1 2.2525 -0.2890 8.8600 24 1 2.3553 1.7693 7.5814 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.2540 0.6546 -2.5589 29 1 2.9321 0.9513 -2.0449 30 1 4.7613 -0.3459 -2.9682 31 1 5.5802 -1.6796 -4.8687 32 1 1.5550 -2.3888 -6.1008 33 1 0.7395 -1.0648 -4.1922 34 1 1.3039 0.6398 2.5387 35 1 1.8471 -1.8784 3.6966 36 1 3.3712 -0.9638 3.6019 37 1 3.1718 -2.0000 7.1304 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451244722.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:36 Heat of formation + Delta-G solvation = -111.549061 kcal Electronic energy + Delta-G solvation = -20713.207992 eV Core-core repulsion = 17176.836164 eV Total energy + Delta-G solvation = -3536.371828 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.11330 -39.69799 -39.02334 -37.18881 -34.18937 -32.67177 -32.09244 -31.38823 -30.57771 -27.24143 -26.13208 -24.09528 -23.30257 -22.20943 -21.69402 -19.69283 -17.93956 -17.48751 -16.94372 -16.66180 -16.09573 -15.79252 -15.49959 -15.21804 -14.91024 -14.49531 -14.29269 -14.04343 -13.77763 -13.37991 -13.16764 -13.02936 -12.46155 -12.40734 -12.26345 -11.99442 -11.78739 -11.52450 -11.25037 -11.11646 -10.99595 -10.87875 -10.32589 -9.83819 -9.43237 -9.34143 -8.96725 -8.79986 -8.75007 -7.90933 -6.17907 -4.25351 0.81736 1.00360 3.09420 3.23880 3.28928 3.30348 3.31517 3.64852 4.01659 4.23248 4.36982 4.43962 4.62309 4.72530 4.87254 4.96247 4.99508 5.15965 5.18433 5.21869 5.33198 5.35385 5.63805 5.66335 5.73235 5.75855 5.86605 5.97907 6.14657 6.27436 6.62719 7.04527 7.30477 7.41234 7.50169 7.65044 7.95164 8.58790 8.76375 9.07275 9.41203 10.92218 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.039910 B = 0.002677 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.405125 B =10457.995978 C =10844.763077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.068 3.932 3 H 0.082 0.918 4 O -0.349 6.349 5 C 0.099 3.901 6 C -0.096 4.096 7 C -0.065 4.065 8 C -0.156 4.156 9 C 0.100 3.900 10 F -0.141 7.141 11 C -0.158 4.158 12 C -0.069 4.069 13 C 0.499 3.501 14 O -0.534 6.534 15 N -0.710 5.710 16 C 0.251 3.749 17 C -0.544 4.544 18 H 0.063 0.937 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.904 3.096 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.390 0.610 35 H 0.027 0.973 36 H 0.027 0.973 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.995 6.220 -21.591 22.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.007 3.993 3 H 0.100 0.900 4 O -0.267 6.267 5 C 0.022 3.978 6 C -0.096 4.096 7 C -0.084 4.084 8 C -0.175 4.175 9 C 0.081 3.919 10 F -0.120 7.120 11 C -0.177 4.177 12 C -0.087 4.087 13 C 0.282 3.718 14 O -0.411 6.411 15 N -0.360 5.360 16 C 0.131 3.869 17 C -0.583 4.583 18 H 0.081 0.919 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.731 3.269 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.154 0.846 33 H 0.152 0.848 34 H 0.222 0.778 35 H 0.045 0.955 36 H 0.045 0.955 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.390 5.089 -21.547 22.269 hybrid contribution -0.416 0.942 0.754 1.276 sum -2.806 6.032 -20.794 21.832 Atomic orbital electron populations 1.22212 0.93904 1.03793 1.02713 1.22023 0.94931 0.96281 0.86060 0.90040 1.88154 1.86594 1.33486 1.18469 1.21380 0.99731 0.91730 0.84934 1.19658 0.93526 1.00374 0.96033 1.20994 0.95243 0.96222 0.95900 1.21155 1.00169 1.00308 0.95873 1.17775 0.92835 0.94782 0.86499 1.91498 1.89936 1.75300 1.55264 1.21121 0.93816 1.02314 1.00450 1.20931 1.00073 0.94804 0.92860 1.20178 0.81114 0.86082 0.84450 1.90689 1.40383 1.23554 1.86504 1.46407 1.56369 1.26906 1.06360 1.19116 0.95296 0.92937 0.79573 1.21172 1.37439 1.08953 0.90714 0.91919 1.24957 0.94752 0.95082 0.99217 1.69966 1.37394 1.20506 1.24344 0.86467 0.78890 0.79853 0.81645 1.20056 1.21060 1.20063 0.91831 0.91112 0.90671 0.92162 0.92092 0.84630 0.84531 0.84624 0.84790 0.77755 0.95459 0.95489 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 9.48 37.16 0.35 -1.61 16 2 C 0.07 0.99 3.13 -27.88 -0.09 0.90 16 3 H 0.08 0.94 7.79 -51.93 -0.40 0.53 16 4 O -0.35 -5.34 9.51 -55.09 -0.52 -5.86 16 5 C 0.10 1.05 5.87 36.00 0.21 1.26 16 6 C -0.10 -1.04 5.51 -104.62 -0.58 -1.61 16 7 C -0.07 -0.69 9.70 -39.60 -0.38 -1.07 16 8 C -0.16 -1.59 10.03 -39.51 -0.40 -1.99 16 9 C 0.10 1.07 7.30 -39.42 -0.29 0.78 16 10 F -0.14 -1.58 17.27 2.25 0.04 -1.54 16 11 C -0.16 -1.52 10.03 -39.51 -0.40 -1.92 16 12 C -0.07 -0.66 9.70 -39.59 -0.38 -1.05 16 13 C 0.50 10.13 7.18 -10.98 -0.08 10.05 16 14 O -0.53 -13.57 16.51 -14.31 -0.24 -13.80 16 15 N -0.71 -14.71 5.51 -61.47 -0.34 -15.05 16 16 C 0.25 6.63 5.43 -5.20 -0.03 6.60 16 17 C -0.54 -14.58 9.28 -34.44 -0.32 -14.90 16 18 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.88 -25.99 13.29 55.43 0.74 -25.25 16 21 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H 0.06 0.56 7.87 -51.93 -0.41 0.15 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.07 0.80 7.95 -51.93 -0.41 0.39 16 28 H 0.06 0.49 7.81 -51.93 -0.41 0.09 16 29 H 0.06 0.56 8.03 -51.93 -0.42 0.15 16 30 H 0.14 1.27 8.06 -52.48 -0.42 0.84 16 31 H 0.14 1.14 8.06 -52.48 -0.42 0.71 16 32 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 34 H 0.39 6.72 8.13 -40.82 -0.33 6.38 16 35 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 331.16 15.07 4.99 4.99 Total: -1.00 -33.77 331.16 -7.70 -41.47 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -4.87 Total: 2.35 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -2.47 Total: -2.89 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.40 Total: -40.30 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.76 Total: -19.66 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.77 -7.70 -41.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451244722.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.075 kcal (2) G-P(sol) polarization free energy of solvation -33.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds