Wall clock time and date at job start Tue Mar 31 2020 05:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 114.00210 * 2 1 4 4 C 1.53007 * 109.47250 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46775 * 64.99913 * 4 3 2 6 6 C 1.36935 * 119.99782 * 269.72334 * 5 4 3 7 7 H 1.08003 * 120.00269 * 5.73838 * 6 5 4 8 8 C 1.38813 * 119.99618 * 185.73606 * 6 5 4 9 9 N 1.31615 * 120.00609 * 354.99977 * 8 6 5 10 10 Si 1.86801 * 119.99814 * 174.99001 * 8 6 5 11 11 H 1.48502 * 109.47330 * 0.02562 * 10 8 6 12 12 H 1.48509 * 109.47028 * 120.00158 * 10 8 6 13 13 H 1.48500 * 109.47578 * 240.00532 * 10 8 6 14 14 C 1.46500 * 119.99907 * 90.00310 * 5 4 3 15 15 C 1.50701 * 109.47048 * 85.43209 * 14 5 4 16 16 C 1.38301 * 119.92109 * 275.01361 * 15 14 5 17 17 C 1.38084 * 120.07900 * 179.76439 * 16 15 14 18 18 C 1.38976 * 119.91885 * 0.51426 * 17 16 15 19 19 S 1.76198 * 120.07669 * 179.71937 * 18 17 16 20 20 C 1.81401 * 103.00219 * 0.02562 * 19 18 17 21 21 C 1.38972 * 119.83715 * 359.74244 * 18 17 16 22 22 C 1.38082 * 119.92416 * 359.97438 * 21 18 17 23 23 H 1.08995 * 109.47274 * 300.00321 * 1 2 3 24 24 H 1.08998 * 109.46712 * 59.99810 * 1 2 3 25 25 H 1.08998 * 109.47327 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47030 * 60.00116 * 3 2 1 27 27 H 1.08997 * 109.47069 * 299.99843 * 3 2 1 28 28 H 1.09001 * 109.46793 * 305.00024 * 4 3 2 29 29 H 1.08995 * 109.47193 * 185.00466 * 4 3 2 30 30 H 0.96999 * 120.00736 * 179.97438 * 9 8 6 31 31 H 1.09000 * 109.47118 * 205.43082 * 14 5 4 32 32 H 1.09000 * 109.46816 * 325.43191 * 14 5 4 33 33 H 1.08005 * 119.95759 * 0.02562 * 16 15 14 34 34 H 1.08002 * 120.03693 * 180.25863 * 17 16 15 35 35 H 1.08998 * 109.46944 * 60.00181 * 20 19 18 36 36 H 1.08999 * 109.46788 * 179.97438 * 20 19 18 37 37 H 1.08996 * 109.46919 * 299.99762 * 20 19 18 38 38 H 1.07998 * 120.03581 * 179.97438 * 21 18 17 39 39 H 1.07995 * 119.96160 * 179.97438 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.1032 -0.7972 -1.3327 7 1 3.7902 -1.4193 -0.5071 8 6 4.6337 -1.3774 -2.4767 9 7 4.9235 -0.6295 -3.5202 10 14 4.9366 -3.2197 -2.5352 11 1 4.5295 -3.8296 -1.2438 12 1 4.1405 -3.8175 -3.6372 13 1 6.3800 -3.4770 -2.7712 14 6 4.2883 1.3997 -2.4130 15 6 5.7165 1.8723 -2.3233 16 6 6.0236 3.0050 -1.5916 17 6 7.3318 3.4382 -1.5032 18 6 8.3388 2.7406 -2.1594 19 16 10.0084 3.2939 -2.0555 20 6 9.8852 4.7684 -1.0061 21 6 8.0256 1.6059 -2.8981 22 6 6.7161 1.1752 -2.9772 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6886 1.8463 0.8900 27 1 1.6887 1.8463 -0.8900 28 1 3.8508 0.5684 0.8427 29 1 3.9785 2.1764 0.0903 30 1 5.2946 -1.0348 -4.3195 31 1 4.1547 0.8181 -3.3251 32 1 3.6209 2.2612 -2.4303 33 1 5.2399 3.5490 -1.0853 34 1 7.5714 4.3205 -0.9282 35 1 9.4749 4.4901 -0.0353 36 1 10.8761 5.2018 -0.8706 37 1 9.2306 5.4989 -1.4813 38 1 8.8056 1.0615 -3.4097 39 1 6.4720 0.2937 -3.5514 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453602886.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:01 Heat of formation + Delta-G solvation = 22.965379 kcal Electronic energy + Delta-G solvation = -20177.417314 eV Core-core repulsion = 17213.091645 eV Total energy + Delta-G solvation = -2964.325669 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -38.40512 -37.33091 -35.44594 -31.85392 -30.90014 -30.25431 -28.62393 -28.32390 -25.81684 -25.55593 -23.26850 -21.73865 -21.16505 -19.72385 -17.30232 -16.76559 -15.87195 -15.48203 -15.18359 -14.81817 -14.31600 -14.21067 -13.99107 -13.66809 -13.43490 -13.35378 -13.07397 -12.61067 -12.20040 -12.10357 -11.92089 -11.51019 -11.17945 -11.13578 -10.87861 -10.68560 -10.44385 -10.27690 -10.06225 -10.02918 -9.77555 -9.43467 -9.06050 -8.76378 -8.65070 -8.01409 -6.90791 -6.76118 -5.47189 -3.18367 1.91193 2.12323 2.31428 2.80256 3.41136 3.48447 3.50074 4.42127 4.47810 4.68785 5.12905 5.14376 5.32507 5.48864 5.52849 5.62030 5.64235 5.69739 5.71955 5.91552 5.99119 6.03361 6.14241 6.19294 6.34226 6.36963 6.51123 6.71420 6.73011 6.80838 7.08638 7.19123 7.53152 7.73564 7.79500 7.88883 7.98730 8.16012 8.63660 9.34012 9.86081 10.21479 11.24383 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016851 B = 0.005515 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.228675 B = 5076.295585 C = 6350.858353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.366 6.366 3 C 0.044 3.956 4 C 0.144 3.856 5 N -0.584 5.584 6 C -0.178 4.178 7 H 0.081 0.919 8 C -0.034 4.034 9 N -0.916 5.916 10 Si 0.919 3.081 11 H -0.282 1.282 12 H -0.292 1.292 13 H -0.291 1.291 14 C 0.138 3.862 15 C -0.052 4.052 16 C -0.120 4.120 17 C -0.150 4.150 18 C -0.104 4.104 19 S -0.156 6.156 20 C -0.136 4.136 21 C -0.122 4.122 22 C -0.078 4.078 23 H 0.027 0.973 24 H 0.033 0.967 25 H 0.077 0.923 26 H 0.029 0.971 27 H 0.040 0.960 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.250 0.750 31 H 0.180 0.820 32 H 0.002 0.998 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.109 0.891 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.827 8.089 3.850 8.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.284 6.284 3 C -0.036 4.036 4 C 0.016 3.984 5 N -0.302 5.302 6 C -0.307 4.307 7 H 0.099 0.901 8 C -0.223 4.223 9 N -0.572 5.572 10 Si 0.751 3.249 11 H -0.207 1.207 12 H -0.220 1.220 13 H -0.218 1.218 14 C 0.013 3.987 15 C -0.057 4.057 16 C -0.141 4.141 17 C -0.174 4.174 18 C -0.216 4.216 19 S 0.083 5.917 20 C -0.305 4.305 21 C -0.145 4.145 22 C -0.098 4.098 23 H 0.046 0.954 24 H 0.052 0.948 25 H 0.096 0.904 26 H 0.047 0.953 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.195 0.805 32 H 0.020 0.980 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.098 0.902 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.127 0.873 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 2.037 7.407 3.318 8.368 hybrid contribution -1.096 0.223 0.879 1.423 sum 0.941 7.630 4.196 8.758 Atomic orbital electron populations 1.22630 0.83307 1.01788 0.98717 1.88078 1.17543 1.27792 1.94982 1.23400 0.97940 0.84429 0.97820 1.20887 0.89725 0.97182 0.90582 1.44164 1.75362 1.03216 1.07448 1.19694 1.28560 0.82096 1.00304 0.90138 1.24647 1.02566 0.98459 0.96659 1.68923 1.52187 1.31144 1.04915 0.85866 0.77455 0.84276 0.77282 1.20743 1.21970 1.21837 1.21691 0.86373 0.93196 0.97410 1.21064 1.00283 0.91541 0.92790 1.21025 0.94692 0.98134 1.00242 1.20830 0.93441 1.00404 1.02680 1.21423 0.94298 1.00840 1.05007 1.85144 1.09502 1.32331 1.64715 1.23514 1.06045 0.98742 1.02153 1.20982 0.97902 0.95366 1.00223 1.23017 0.89449 1.00513 0.96819 0.95401 0.94844 0.90446 0.95337 0.94213 0.92865 0.92650 0.93650 0.80543 0.97959 0.87740 0.87760 0.90225 0.88268 0.90240 0.87292 0.80071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.37 -7.23 10.19 -35.23 -0.36 -7.59 16 3 C 0.04 0.79 6.28 37.16 0.23 1.02 16 4 C 0.14 2.89 6.11 -4.04 -0.02 2.86 16 5 N -0.58 -13.80 2.49 -174.61 -0.44 -14.23 16 6 C -0.18 -4.61 9.33 -15.06 -0.14 -4.75 16 7 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 8 C -0.03 -0.88 5.45 -17.43 -0.09 -0.98 16 9 N -0.92 -23.30 5.73 55.49 0.32 -22.99 16 10 Si 0.92 21.39 29.56 -169.99 -5.02 16.37 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 C 0.14 3.19 5.29 -5.19 -0.03 3.16 16 15 C -0.05 -1.16 5.46 -104.57 -0.57 -1.73 16 16 C -0.12 -2.37 9.34 -39.61 -0.37 -2.74 16 17 C -0.15 -2.77 9.36 -39.36 -0.37 -3.13 16 18 C -0.10 -1.98 6.11 -39.04 -0.24 -2.21 16 19 S -0.16 -2.48 22.56 -107.50 -2.43 -4.90 16 20 C -0.14 -1.59 9.15 101.05 0.92 -0.66 16 21 C -0.12 -2.51 9.79 -39.37 -0.39 -2.90 16 22 C -0.08 -1.77 9.20 -39.61 -0.36 -2.13 16 23 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 26 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 1.09 8.04 -51.93 -0.42 0.67 16 29 H 0.06 1.02 7.03 -51.93 -0.37 0.65 16 30 H 0.25 6.21 8.08 -40.82 -0.33 5.88 16 31 H 0.18 4.56 4.55 -82.33 -0.37 4.19 16 32 H 0.00 0.05 8.08 -51.93 -0.42 -0.37 16 33 H 0.10 1.87 7.42 -52.48 -0.39 1.48 16 34 H 0.10 1.63 5.88 -52.49 -0.31 1.32 16 35 H 0.08 0.91 7.75 -51.92 -0.40 0.51 16 36 H 0.10 0.93 8.14 -51.92 -0.42 0.50 16 37 H 0.08 0.88 7.75 -51.93 -0.40 0.48 16 38 H 0.11 2.10 8.06 -52.49 -0.42 1.68 16 39 H 0.18 4.39 4.54 -52.72 -0.24 4.15 16 LS Contribution 327.61 15.07 4.94 4.94 Total: -1.00 -27.21 327.61 -9.12 -36.33 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -5.81 Total: 4.67 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -0.32 Total: -12.59 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: -0.12 Total: -37.22 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -0.36 Total: -7.59 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -2.48 SS G_CDS: -2.43 Total: -4.90 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.21 -9.12 -36.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453602886.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.296 kcal (2) G-P(sol) polarization free energy of solvation -27.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds