Wall clock time and date at job start Tue Mar 31 2020 05:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38232 * 120.00794 * 2 1 4 4 C 1.38220 * 120.01498 * 179.97438 * 3 2 1 5 5 C 1.50692 * 119.98848 * 180.02562 * 4 3 2 6 6 N 1.46899 * 109.47320 * 90.00113 * 5 4 3 7 7 C 1.46902 * 111.00369 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47347 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.46899 * 300.00277 * 8 7 6 10 10 C 1.52998 * 109.47099 * 60.00193 * 8 7 6 11 11 C 1.50697 * 109.47190 * 179.97438 * 8 7 6 12 12 H 1.08004 * 119.99687 * 0.02562 * 11 8 7 13 13 C 1.37872 * 120.00078 * 179.97438 * 11 8 7 14 14 N 1.31516 * 120.00100 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 120.00369 * 180.02562 * 13 11 8 16 16 H 1.48497 * 109.47128 * 59.99764 * 15 13 11 17 17 H 1.48494 * 109.47323 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46628 * 300.00409 * 15 13 11 19 19 C 1.38264 * 120.02583 * 0.02562 * 4 3 2 20 20 C 1.38189 * 120.01199 * 359.97438 * 19 4 3 21 21 C 1.38335 * 120.00426 * 179.97438 * 2 1 3 22 22 Cl 1.73595 * 120.01468 * 359.74809 * 21 2 1 23 23 H 1.08997 * 109.47389 * 270.01704 * 1 2 3 24 24 H 1.09002 * 109.47291 * 30.02179 * 1 2 3 25 25 H 1.09002 * 109.47234 * 150.01696 * 1 2 3 26 26 H 1.08002 * 119.99411 * 359.95836 * 3 2 1 27 27 H 1.08998 * 109.47388 * 210.00495 * 5 4 3 28 28 H 1.09001 * 109.47195 * 330.00365 * 5 4 3 29 29 H 1.00901 * 110.99351 * 56.04635 * 6 5 4 30 30 H 1.08999 * 109.46854 * 300.00488 * 7 6 5 31 31 H 1.08996 * 109.46680 * 59.99998 * 7 6 5 32 32 H 1.09004 * 109.47116 * 59.99895 * 9 8 7 33 33 H 1.08999 * 109.46944 * 180.02562 * 9 8 7 34 34 H 1.08995 * 109.46739 * 299.99744 * 9 8 7 35 35 H 1.08999 * 109.47139 * 59.99627 * 10 8 7 36 36 H 1.08995 * 109.47540 * 180.02562 * 10 8 7 37 37 H 1.09004 * 109.47119 * 300.00230 * 10 8 7 38 38 H 0.97004 * 120.00414 * 179.97438 * 14 13 11 39 39 H 1.07997 * 119.99869 * 179.97438 * 19 4 3 40 40 H 1.08001 * 120.00973 * 180.02562 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1970 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3335 2.5025 0.0011 6 7 4.5777 2.9263 1.3863 7 6 5.3121 4.1980 1.4261 8 6 5.5476 4.6056 2.8818 9 6 4.2011 4.7718 3.5891 10 6 6.3648 3.5225 3.5889 11 6 6.3015 5.9098 2.9226 12 1 6.5840 6.3993 2.0022 13 6 6.6297 6.4788 4.1348 14 7 6.2853 5.8830 5.2556 15 14 7.5636 8.0958 4.1855 16 1 6.7708 9.1470 3.4988 17 1 7.7923 8.4913 5.5984 18 1 8.8706 7.9342 3.4994 19 6 4.2725 0.0002 0.0005 20 6 3.5825 -1.1971 0.0005 21 6 2.1987 -1.1980 0.0005 22 17 1.3313 -2.7016 0.0078 23 1 -0.3634 0.0003 1.0276 24 1 -0.3634 0.8898 -0.5142 25 1 -0.3634 -0.8901 -0.5136 26 1 1.6583 2.1324 -0.0007 27 1 5.2861 2.3726 -0.5124 28 1 3.7444 3.2621 -0.5127 29 1 5.0667 2.2104 1.9025 30 1 6.2715 4.0794 0.9225 31 1 4.7301 4.9695 0.9220 32 1 3.6563 3.8282 3.5596 33 1 4.3689 5.0627 4.6261 34 1 3.6190 5.5435 3.0854 35 1 7.3241 3.4040 3.0849 36 1 6.5323 3.8126 4.6261 37 1 5.8200 2.5789 3.5593 38 1 6.5165 6.2831 6.1085 39 1 5.3525 0.0008 0.0005 40 1 4.1231 -2.1321 0.0010 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459726263.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:33 Heat of formation + Delta-G solvation = 0.859536 kcal Electronic energy + Delta-G solvation = -19456.647546 eV Core-core repulsion = 16489.319589 eV Total energy + Delta-G solvation = -2967.327956 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.66968 -37.08619 -36.47151 -34.31972 -32.77651 -31.55311 -30.03714 -27.10798 -25.69417 -25.56012 -25.17505 -23.09751 -22.33092 -20.52880 -18.46173 -16.95147 -16.13259 -15.93318 -15.34669 -14.70782 -14.49749 -14.27908 -13.86509 -13.75621 -13.27998 -12.91395 -12.62968 -12.54686 -12.43493 -12.13520 -11.82648 -11.60008 -11.40093 -11.17940 -11.07101 -10.96729 -10.79614 -10.64844 -10.59004 -10.18475 -10.06584 -9.39348 -9.13093 -8.88982 -8.67150 -8.56150 -8.29238 -7.74764 -5.91543 -4.02326 1.07705 1.23318 2.04269 3.32197 3.37237 3.39536 3.52571 4.43440 4.61984 4.67683 4.73784 5.06286 5.19020 5.24519 5.33781 5.38159 5.49237 5.53845 5.60974 5.81382 5.87240 6.02395 6.13398 6.26099 6.31491 6.35562 6.57649 6.70319 6.76504 6.87900 7.06513 7.15717 7.37622 7.45306 7.68655 7.75250 7.81914 7.92308 8.20266 8.33891 8.54906 8.98944 9.62738 11.08897 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.038737 B = 0.003058 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.658214 B = 9154.349132 C = 9205.923157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.078 4.078 3 C -0.087 4.087 4 C -0.061 4.061 5 C 0.092 3.908 6 N -0.680 5.680 7 C 0.075 3.925 8 C 0.070 3.930 9 C -0.119 4.119 10 C -0.132 4.132 11 C -0.509 4.509 12 H 0.051 0.949 13 C 0.066 3.934 14 N -0.884 5.884 15 Si 0.889 3.111 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.279 1.279 19 C -0.110 4.110 20 C -0.107 4.107 21 C -0.042 4.042 22 Cl -0.078 7.078 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.133 0.867 27 H 0.033 0.967 28 H 0.077 0.923 29 H 0.339 0.661 30 H 0.014 0.986 31 H 0.057 0.943 32 H 0.020 0.980 33 H 0.074 0.926 34 H 0.018 0.982 35 H 0.019 0.981 36 H 0.083 0.917 37 H 0.010 0.990 38 H 0.259 0.741 39 H 0.128 0.872 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.221 -13.649 -10.813 19.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.079 4.079 3 C -0.106 4.106 4 C -0.062 4.062 5 C -0.037 4.037 6 N -0.312 5.312 7 C -0.053 4.053 8 C 0.069 3.931 9 C -0.177 4.177 10 C -0.190 4.190 11 C -0.547 4.547 12 H 0.070 0.930 13 C -0.135 4.135 14 N -0.523 5.523 15 Si 0.717 3.283 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.205 1.205 19 C -0.129 4.129 20 C -0.126 4.126 21 C -0.069 4.069 22 Cl -0.050 7.050 23 H 0.094 0.906 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.151 0.849 27 H 0.052 0.948 28 H 0.096 0.904 29 H 0.158 0.842 30 H 0.032 0.968 31 H 0.076 0.924 32 H 0.039 0.961 33 H 0.092 0.908 34 H 0.037 0.963 35 H 0.038 0.962 36 H 0.102 0.898 37 H 0.029 0.971 38 H 0.069 0.931 39 H 0.146 0.854 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.893 -13.438 -10.539 19.254 hybrid contribution 1.461 0.466 -0.204 1.547 sum -7.432 -12.971 -10.743 18.409 Atomic orbital electron populations 1.20854 0.90449 1.03175 1.02974 1.19763 0.96657 0.91401 1.00043 1.20917 0.93552 0.97073 0.99074 1.20040 0.93904 0.95118 0.97094 1.20922 0.97583 0.92707 0.92445 1.60679 1.53912 1.06684 1.09955 1.22193 0.93585 0.88826 1.00745 1.18082 0.93316 0.93673 0.88028 1.21638 0.96112 0.97106 1.02814 1.21837 0.97127 0.95697 1.04357 1.21072 1.35630 1.05847 0.92188 0.93042 1.24882 0.95782 0.97128 0.95738 1.69824 1.46622 1.38666 0.97200 0.86719 0.80385 0.84343 0.76853 1.20388 1.21355 1.20478 1.21025 1.00103 0.91309 1.00463 1.20955 0.91873 0.98986 1.00794 1.20759 0.92331 0.86328 1.07484 1.98339 1.77097 1.32493 1.97025 0.90629 0.91101 0.91091 0.84910 0.94846 0.90421 0.84187 0.96773 0.92439 0.96100 0.90755 0.96327 0.96231 0.89811 0.97068 0.93111 0.85370 0.85211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 9.61 36.00 0.35 -0.76 16 2 C -0.08 -0.90 5.88 -104.59 -0.62 -1.52 16 3 C -0.09 -1.08 9.36 -39.59 -0.37 -1.45 16 4 C -0.06 -0.78 5.39 -104.62 -0.56 -1.35 16 5 C 0.09 1.30 5.81 -4.98 -0.03 1.27 16 6 N -0.68 -11.80 5.70 -115.06 -0.66 -12.46 16 7 C 0.07 1.52 4.59 -3.82 -0.02 1.50 16 8 C 0.07 1.66 0.57 -155.66 -0.09 1.57 16 9 C -0.12 -2.89 8.09 37.16 0.30 -2.59 16 10 C -0.13 -3.10 7.92 37.16 0.29 -2.81 16 11 C -0.51 -13.59 8.01 -34.44 -0.28 -13.87 16 12 H 0.05 1.37 7.74 -52.48 -0.41 0.96 16 13 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 14 N -0.88 -24.42 9.35 55.43 0.52 -23.90 16 15 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 C -0.11 -1.30 9.70 -39.59 -0.38 -1.68 16 20 C -0.11 -1.21 9.83 -39.55 -0.39 -1.60 16 21 C -0.04 -0.49 6.31 -39.49 -0.25 -0.74 16 22 Cl -0.08 -0.82 27.30 -51.86 -1.42 -2.24 16 23 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 25 H 0.07 0.62 6.91 -51.93 -0.36 0.26 16 26 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 27 H 0.03 0.45 8.09 -51.93 -0.42 0.03 16 28 H 0.08 1.06 8.09 -51.93 -0.42 0.64 16 29 H 0.34 5.92 6.76 -39.29 -0.27 5.65 16 30 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.02 0.46 7.60 -51.93 -0.39 0.07 16 33 H 0.07 1.98 6.07 -51.93 -0.32 1.67 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 37 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 38 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 39 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 334.62 15.07 5.04 5.04 Total: -1.00 -27.24 334.62 -9.84 -37.08 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -6.17 Total: 2.82 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -2.13 Total: -22.33 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: -0.14 Total: -36.35 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.42 Total: -2.24 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.24 -9.84 -37.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459726263.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.937 kcal (2) G-P(sol) polarization free energy of solvation -27.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds