Wall clock time and date at job start Tue Mar 31 2020 06:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46939 * 2 1 4 4 C 1.50701 * 109.47294 * 239.99841 * 2 1 3 5 5 H 1.08006 * 119.99752 * 240.00141 * 4 2 1 6 6 C 1.37872 * 119.99936 * 59.99574 * 4 2 1 7 7 N 1.31518 * 120.00140 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00135 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46859 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.47451 * 120.00171 * 8 6 4 11 11 H 1.48503 * 109.47163 * 240.00540 * 8 6 4 12 12 C 1.53001 * 109.46927 * 119.99631 * 2 1 3 13 13 N 1.46903 * 109.47182 * 299.99832 * 12 2 1 14 14 C 1.46899 * 110.99839 * 179.97438 * 13 12 2 15 15 C 1.53000 * 109.47091 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47104 * 180.02562 * 15 14 13 17 17 C 1.38239 * 119.98824 * 270.29704 * 16 15 14 18 18 C 1.38212 * 120.01553 * 180.25745 * 17 16 15 19 19 C 1.38361 * 119.98341 * 359.46433 * 18 17 16 20 20 Cl 1.73597 * 120.00859 * 180.27890 * 19 18 17 21 21 C 1.38346 * 119.97306 * 0.25744 * 19 18 17 22 22 C 1.38210 * 119.98768 * 0.02562 * 21 19 18 23 23 H 1.09001 * 109.46911 * 300.00311 * 1 2 3 24 24 H 1.08998 * 109.47178 * 60.00567 * 1 2 3 25 25 H 1.08996 * 109.46972 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47410 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.47115 * 299.99460 * 3 2 1 28 28 H 1.08997 * 109.47564 * 59.99567 * 3 2 1 29 29 H 0.97001 * 119.99872 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.47119 * 180.02562 * 12 2 1 31 31 H 1.08996 * 109.47311 * 60.00187 * 12 2 1 32 32 H 1.00900 * 110.99627 * 56.05488 * 13 12 2 33 33 H 1.09004 * 109.47262 * 60.00154 * 14 13 12 34 34 H 1.09000 * 109.47578 * 300.00659 * 14 13 12 35 35 H 1.08993 * 109.47106 * 60.00197 * 15 14 13 36 36 H 1.08996 * 109.46854 * 299.99855 * 15 14 13 37 37 H 1.08004 * 119.99430 * 359.97438 * 17 16 15 38 38 H 1.08002 * 120.01126 * 179.75014 * 18 17 16 39 39 H 1.08002 * 120.00348 * 180.02562 * 21 19 18 40 40 H 1.08002 * 119.99295 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 3.1456 -2.2878 -3.6036 10 1 1.1662 -1.5869 -4.8160 11 1 3.1467 -0.1875 -4.8164 12 6 2.0400 -0.7212 1.2493 13 7 1.5503 -0.0286 2.4487 14 6 2.0208 -0.6950 3.6704 15 6 1.4913 0.0529 4.8956 16 6 1.9745 -0.6304 6.1488 17 6 1.2216 -1.6395 6.7197 18 6 1.6616 -2.2629 7.8721 19 6 2.8613 -1.8844 8.4481 20 17 3.4181 -2.6720 9.8915 21 6 3.6171 -0.8784 7.8731 22 6 3.1732 -0.2518 6.7240 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.1300 1.4426 -0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6766 1.9564 0.8899 29 1 0.7095 1.1616 -3.4844 30 1 3.1300 -0.7208 1.2496 31 1 1.6767 -1.7488 1.2494 32 1 0.5438 0.0414 2.4402 33 1 3.1107 -0.6953 3.6874 34 1 1.6571 -1.7224 3.6870 35 1 0.4015 0.0527 4.8783 36 1 1.8548 1.0803 4.8791 37 1 0.2871 -1.9377 6.2677 38 1 1.0714 -3.0485 8.3204 39 1 4.5539 -0.5829 8.3220 40 1 3.7630 0.5339 6.2752 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459732025.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:00 Heat of formation + Delta-G solvation = -0.692642 kcal Electronic energy + Delta-G solvation = -19046.074927 eV Core-core repulsion = 16078.679663 eV Total energy + Delta-G solvation = -2967.395264 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.66340 -37.16547 -36.68204 -34.67046 -32.43093 -31.29333 -30.67695 -27.76208 -25.56880 -25.21250 -24.07717 -23.06785 -22.34323 -20.98892 -18.44306 -17.29166 -16.04292 -15.90323 -15.52039 -15.22665 -14.61703 -14.22620 -13.92592 -13.75083 -13.53753 -13.21880 -12.87223 -12.54295 -12.15747 -12.00405 -11.79488 -11.40839 -11.37553 -11.11704 -11.08981 -11.01188 -10.85059 -10.60750 -10.55296 -10.17315 -10.05825 -9.39015 -9.27422 -9.12312 -8.71839 -8.61649 -8.29693 -7.73657 -5.91666 -4.01950 0.91390 1.06245 1.89209 3.30037 3.38429 3.39065 3.42128 4.41406 4.53005 4.53430 4.64915 5.02351 5.08291 5.14919 5.30249 5.33934 5.38575 5.49732 5.69942 5.75580 5.96242 5.99379 6.04281 6.17367 6.33017 6.38122 6.46307 6.59510 6.71242 6.88613 7.06882 7.16225 7.37589 7.46247 7.71412 7.75652 7.82659 7.95768 8.20871 8.34324 8.55709 8.99736 9.63177 11.08907 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.040533 B = 0.002569 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.627206 B =10897.529302 C =11094.910067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.068 3.932 3 C -0.119 4.119 4 C -0.506 4.506 5 H 0.052 0.948 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.888 3.112 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.076 3.924 13 N -0.688 5.688 14 C 0.065 3.935 15 C -0.082 4.082 16 C -0.066 4.066 17 C -0.106 4.106 18 C -0.109 4.109 19 C -0.043 4.043 20 Cl -0.079 7.079 21 C -0.109 4.109 22 C -0.103 4.103 23 H 0.011 0.989 24 H 0.083 0.917 25 H 0.018 0.982 26 H 0.018 0.982 27 H 0.074 0.926 28 H 0.020 0.980 29 H 0.257 0.743 30 H 0.056 0.944 31 H 0.013 0.987 32 H 0.337 0.663 33 H 0.067 0.933 34 H 0.022 0.978 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.368 -3.193 20.975 21.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.067 3.933 3 C -0.177 4.177 4 C -0.545 4.545 5 H 0.070 0.930 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.716 3.284 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.211 1.211 12 C -0.053 4.053 13 N -0.319 5.319 14 C -0.065 4.065 15 C -0.120 4.120 16 C -0.067 4.067 17 C -0.124 4.124 18 C -0.128 4.128 19 C -0.070 4.070 20 Cl -0.050 7.050 21 C -0.128 4.128 22 C -0.121 4.121 23 H 0.030 0.970 24 H 0.102 0.898 25 H 0.038 0.962 26 H 0.037 0.963 27 H 0.093 0.907 28 H 0.039 0.961 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.031 0.969 32 H 0.156 0.844 33 H 0.086 0.914 34 H 0.040 0.960 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.853 -2.695 20.947 21.200 hybrid contribution -0.119 -1.475 -0.702 1.638 sum 1.734 -4.170 20.245 20.743 Atomic orbital electron populations 1.21840 0.98537 0.98359 1.00316 1.18101 0.92106 0.93080 0.89970 1.21642 0.97789 0.98193 1.00098 1.21153 1.31034 1.11782 0.90492 0.92971 1.24888 0.95069 0.94960 0.98708 1.69845 1.36944 1.22786 1.22800 0.86605 0.78603 0.79739 0.83417 1.19954 1.21174 1.21096 1.22149 0.98937 0.94371 0.89800 1.60619 1.16278 1.53798 1.01249 1.21875 1.00335 0.94789 0.89523 1.20660 1.01001 0.99902 0.90422 1.20102 0.94422 0.95722 0.96478 1.21077 1.00352 0.95866 0.95106 1.21039 0.94943 1.00562 0.96256 1.20917 0.96747 0.98185 0.91125 1.98363 1.89441 1.79903 1.37289 1.21053 0.99933 0.95472 0.96299 1.21105 0.95967 1.00089 0.94982 0.97021 0.89800 0.96237 0.96315 0.90735 0.96080 0.93247 0.92587 0.96903 0.84437 0.91404 0.95965 0.90915 0.89750 0.85084 0.85108 0.85048 0.84809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 7.92 37.16 0.29 -2.80 16 2 C 0.07 1.63 0.57 -155.66 -0.09 1.54 16 3 C -0.12 -2.89 8.09 37.16 0.30 -2.59 16 4 C -0.51 -13.59 8.01 -34.44 -0.28 -13.87 16 5 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 6 C 0.06 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.88 -24.41 9.35 55.43 0.52 -23.89 16 8 Si 0.89 21.07 29.54 -169.99 -5.02 16.04 16 9 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 C 0.08 1.57 4.59 -3.82 -0.02 1.55 16 13 N -0.69 -11.85 5.71 -113.78 -0.65 -12.50 16 14 C 0.06 0.90 5.67 -3.82 -0.02 0.88 16 15 C -0.08 -0.92 5.60 -27.88 -0.16 -1.08 16 16 C -0.07 -0.70 5.13 -104.62 -0.54 -1.23 16 17 C -0.11 -1.04 9.70 -39.59 -0.38 -1.42 16 18 C -0.11 -1.04 9.83 -39.55 -0.39 -1.43 16 19 C -0.04 -0.43 6.32 -39.50 -0.25 -0.68 16 20 Cl -0.08 -0.73 28.96 -51.86 -1.50 -2.23 16 21 C -0.11 -1.04 9.83 -39.55 -0.39 -1.43 16 22 C -0.10 -1.02 9.70 -39.59 -0.38 -1.40 16 23 H 0.01 0.23 6.57 -51.93 -0.34 -0.11 16 24 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.07 1.98 6.07 -51.93 -0.32 1.66 16 28 H 0.02 0.46 7.60 -51.93 -0.39 0.07 16 29 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.34 5.67 6.77 -39.29 -0.27 5.40 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 36 H 0.08 0.95 8.08 -51.93 -0.42 0.54 16 37 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 38 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 40 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 337.39 15.07 5.08 5.08 Total: -1.00 -27.42 337.39 -10.20 -37.62 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -6.24 Total: 2.18 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: -2.39 Total: -22.31 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: -0.13 Total: -36.39 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.50 Total: -2.23 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.42 -10.20 -37.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459732025.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.931 kcal (2) G-P(sol) polarization free energy of solvation -27.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds