Wall clock time and date at job start Tue Mar 31 2020 06:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46939 * 2 1 4 4 C 1.50701 * 109.47294 * 239.99841 * 2 1 3 5 5 H 1.08006 * 119.99752 * 240.00141 * 4 2 1 6 6 C 1.37872 * 119.99936 * 59.99574 * 4 2 1 7 7 N 1.31518 * 120.00140 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00135 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46859 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.47451 * 120.00171 * 8 6 4 11 11 H 1.48503 * 109.47163 * 240.00540 * 8 6 4 12 12 C 1.53001 * 109.46927 * 119.99631 * 2 1 3 13 13 N 1.46903 * 109.47182 * 299.99832 * 12 2 1 14 14 C 1.46899 * 110.99839 * 179.97438 * 13 12 2 15 15 C 1.53000 * 109.47091 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47104 * 180.02562 * 15 14 13 17 17 C 1.38239 * 119.98824 * 270.29704 * 16 15 14 18 18 C 1.38212 * 120.01553 * 180.25745 * 17 16 15 19 19 C 1.38361 * 119.98341 * 359.46433 * 18 17 16 20 20 Cl 1.73597 * 120.00859 * 180.27890 * 19 18 17 21 21 C 1.38346 * 119.97306 * 0.25744 * 19 18 17 22 22 C 1.38210 * 119.98768 * 0.02562 * 21 19 18 23 23 H 1.09001 * 109.46911 * 300.00311 * 1 2 3 24 24 H 1.08998 * 109.47178 * 60.00567 * 1 2 3 25 25 H 1.08996 * 109.46972 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47410 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.47115 * 299.99460 * 3 2 1 28 28 H 1.08997 * 109.47564 * 59.99567 * 3 2 1 29 29 H 0.97001 * 119.99872 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.47119 * 180.02562 * 12 2 1 31 31 H 1.08996 * 109.47311 * 60.00187 * 12 2 1 32 32 H 1.00900 * 110.99627 * 56.05488 * 13 12 2 33 33 H 1.09004 * 109.47262 * 60.00154 * 14 13 12 34 34 H 1.09000 * 109.47578 * 300.00659 * 14 13 12 35 35 H 1.08993 * 109.47106 * 60.00197 * 15 14 13 36 36 H 1.08996 * 109.46854 * 299.99855 * 15 14 13 37 37 H 1.08004 * 119.99430 * 359.97438 * 17 16 15 38 38 H 1.08002 * 120.01126 * 179.75014 * 18 17 16 39 39 H 1.08002 * 120.00348 * 180.02562 * 21 19 18 40 40 H 1.08002 * 119.99295 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 3.1456 -2.2878 -3.6036 10 1 1.1662 -1.5869 -4.8160 11 1 3.1467 -0.1875 -4.8164 12 6 2.0400 -0.7212 1.2493 13 7 1.5503 -0.0286 2.4487 14 6 2.0208 -0.6950 3.6704 15 6 1.4913 0.0529 4.8956 16 6 1.9745 -0.6304 6.1488 17 6 1.2216 -1.6395 6.7197 18 6 1.6616 -2.2629 7.8721 19 6 2.8613 -1.8844 8.4481 20 17 3.4181 -2.6720 9.8915 21 6 3.6171 -0.8784 7.8731 22 6 3.1732 -0.2518 6.7240 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.1300 1.4426 -0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6766 1.9564 0.8899 29 1 0.7095 1.1616 -3.4844 30 1 3.1300 -0.7208 1.2496 31 1 1.6767 -1.7488 1.2494 32 1 0.5438 0.0414 2.4402 33 1 3.1107 -0.6953 3.6874 34 1 1.6571 -1.7224 3.6870 35 1 0.4015 0.0527 4.8783 36 1 1.8548 1.0803 4.8791 37 1 0.2871 -1.9377 6.2677 38 1 1.0714 -3.0485 8.3204 39 1 4.5539 -0.5829 8.3220 40 1 3.7630 0.5339 6.2752 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459732025.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:59 Heat of formation + Delta-G solvation = -13.357236 kcal Electronic energy + Delta-G solvation = -19046.624105 eV Core-core repulsion = 16078.679663 eV Total energy + Delta-G solvation = -2967.944442 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.41828 -38.70361 -37.52051 -36.08065 -33.84541 -32.26229 -32.00781 -28.86594 -27.48405 -27.23071 -25.53844 -23.78860 -23.52981 -21.86234 -20.29704 -18.03352 -17.89084 -17.06269 -16.70894 -16.35057 -16.15095 -15.48106 -15.10968 -14.64229 -14.50755 -14.38811 -14.26190 -14.01644 -13.76773 -13.28234 -13.09728 -12.90853 -12.60031 -12.54137 -12.45075 -12.20609 -12.19159 -12.06417 -12.03375 -11.87695 -11.69989 -11.28299 -10.92681 -10.57819 -10.33653 -9.99454 -9.51227 -9.16210 -7.96191 -6.12878 0.15371 0.34281 1.16186 1.41175 1.44740 1.53891 2.46792 2.63792 3.25888 3.40295 3.81711 3.96679 4.07301 4.19059 4.32483 4.41221 4.48454 4.59754 4.65300 4.68104 4.80311 4.89741 4.95847 5.04253 5.09573 5.19730 5.21634 5.26982 5.28465 5.30994 5.45280 5.55890 5.65158 5.71361 5.79257 5.86239 6.18681 6.27236 6.36128 6.51234 6.67545 6.97064 7.54769 9.02021 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.040533 B = 0.002569 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.627206 B =10897.529302 C =11094.910067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.058 3.942 3 C -0.107 4.107 4 C -0.526 4.526 5 H 0.043 0.957 6 C 0.022 3.978 7 N -0.903 5.903 8 Si 0.943 3.057 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.283 1.283 12 C 0.090 3.910 13 N -0.688 5.688 14 C 0.068 3.932 15 C -0.070 4.070 16 C -0.077 4.077 17 C -0.110 4.110 18 C -0.114 4.114 19 C -0.053 4.053 20 Cl -0.076 7.076 21 C -0.114 4.114 22 C -0.109 4.109 23 H 0.037 0.963 24 H 0.055 0.945 25 H 0.016 0.984 26 H 0.009 0.991 27 H 0.048 0.952 28 H 0.037 0.963 29 H 0.257 0.743 30 H 0.046 0.954 31 H 0.007 0.993 32 H 0.341 0.659 33 H 0.062 0.938 34 H 0.024 0.976 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.335 -3.590 22.111 22.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.058 3.942 3 C -0.165 4.165 4 C -0.565 4.565 5 H 0.061 0.939 6 C -0.177 4.177 7 N -0.542 5.542 8 Si 0.770 3.230 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 C -0.039 4.039 13 N -0.320 5.320 14 C -0.062 4.062 15 C -0.108 4.108 16 C -0.078 4.078 17 C -0.128 4.128 18 C -0.133 4.133 19 C -0.079 4.079 20 Cl -0.047 7.047 21 C -0.133 4.133 22 C -0.127 4.127 23 H 0.056 0.944 24 H 0.074 0.926 25 H 0.036 0.964 26 H 0.028 0.972 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.026 0.974 32 H 0.160 0.840 33 H 0.081 0.919 34 H 0.042 0.958 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.162 0.838 38 H 0.163 0.837 39 H 0.163 0.837 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.819 -3.092 22.099 22.388 hybrid contribution -0.095 -1.357 -0.993 1.685 sum 1.724 -4.450 21.106 21.638 Atomic orbital electron populations 1.21676 0.98047 0.98116 1.00176 1.18157 0.92527 0.92900 0.90634 1.21482 0.97056 0.98385 0.99532 1.21474 1.31116 1.11825 0.92051 0.93873 1.25526 0.95381 0.95662 1.01137 1.69970 1.37482 1.23564 1.23205 0.85736 0.78090 0.78752 0.80388 1.19736 1.20852 1.20919 1.21799 0.98200 0.93858 0.90038 1.60530 1.16524 1.53775 1.01195 1.21896 1.00082 0.95053 0.89122 1.20509 1.01446 0.99459 0.89384 1.20087 0.94965 0.96313 0.96461 1.21268 1.00803 0.95568 0.95167 1.21249 0.94996 1.00850 0.96201 1.21102 0.97076 0.98394 0.91355 1.98363 1.89421 1.79842 1.37104 1.21249 1.00485 0.95306 0.96234 1.21279 0.95948 1.00357 0.95117 0.94413 0.92592 0.96443 0.97156 0.93330 0.94407 0.93324 0.93536 0.97438 0.83997 0.91903 0.95816 0.89989 0.89752 0.83809 0.83684 0.83701 0.83856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.63 7.92 71.98 0.57 -5.06 16 2 C 0.06 2.78 0.57 -52.93 -0.03 2.75 16 3 C -0.11 -5.14 8.09 71.98 0.58 -4.56 16 4 C -0.53 -28.33 8.01 25.60 0.21 -28.13 16 5 H 0.04 2.34 7.74 -2.91 -0.02 2.32 16 6 C 0.02 1.18 5.15 84.65 0.44 1.62 16 7 N -0.90 -50.15 9.35 21.45 0.20 -49.95 16 8 Si 0.94 43.26 29.54 68.60 2.03 45.29 16 9 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 12 C 0.09 3.66 4.59 86.30 0.40 4.05 16 13 N -0.69 -22.56 5.71 -513.88 -2.94 -25.49 16 14 C 0.07 1.77 5.67 86.30 0.49 2.26 16 15 C -0.07 -1.43 5.60 29.85 0.17 -1.26 16 16 C -0.08 -1.48 5.13 -19.86 -0.10 -1.58 16 17 C -0.11 -1.94 9.70 22.26 0.22 -1.72 16 18 C -0.11 -1.97 9.83 22.29 0.22 -1.75 16 19 C -0.05 -0.96 6.32 22.32 0.14 -0.82 16 20 Cl -0.08 -1.31 28.96 -2.72 -0.08 -1.39 16 21 C -0.11 -1.99 9.83 22.29 0.22 -1.77 16 22 C -0.11 -1.97 9.70 22.26 0.22 -1.75 16 23 H 0.04 1.49 6.57 -2.39 -0.02 1.47 16 24 H 0.06 2.90 6.07 -2.39 -0.01 2.89 16 25 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.05 2.58 6.07 -2.39 -0.01 2.57 16 28 H 0.04 1.64 7.60 -2.39 -0.02 1.62 16 29 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 30 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.34 10.73 6.77 -89.69 -0.61 10.12 16 33 H 0.06 1.71 8.14 -2.38 -0.02 1.70 16 34 H 0.02 0.62 8.14 -2.39 -0.02 0.61 16 35 H 0.08 1.52 8.09 -2.39 -0.02 1.50 16 36 H 0.08 1.73 8.08 -2.39 -0.02 1.71 16 37 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16 38 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 39 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 40 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -57.26 337.39 3.35 -53.92 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.41 Total: 15.33 kcal Atomic # 6 Polarization: -41.43 SS G_CDS: 3.72 Total: -37.71 kcal Atomic # 7 Polarization: -72.70 SS G_CDS: -2.74 Total: -75.44 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.08 Total: -1.39 kcal Total: -57.26 3.35 -53.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459732025.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.562 kcal (2) G-P(sol) polarization free energy of solvation -57.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds