Wall clock time and date at job start Tue Mar 31 2020 05:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38229 * 120.00928 * 2 1 4 4 C 1.38224 * 120.01489 * 179.97438 * 3 2 1 5 5 C 1.38262 * 120.02428 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99069 * 179.97438 * 5 4 3 7 7 N 1.46905 * 109.47066 * 90.00171 * 6 5 4 8 8 C 1.46901 * 110.99870 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.46916 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.46923 * 299.99733 * 9 8 7 11 11 C 1.52999 * 109.46998 * 59.99872 * 9 8 7 12 12 C 1.50703 * 109.46807 * 179.97438 * 9 8 7 13 13 H 1.07995 * 120.00107 * 359.97438 * 12 9 8 14 14 C 1.37878 * 119.99714 * 179.97438 * 12 9 8 15 15 N 1.31510 * 119.99944 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 119.99765 * 179.97438 * 14 12 9 17 17 H 1.48494 * 109.47051 * 60.00574 * 16 14 12 18 18 H 1.48501 * 109.46677 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47226 * 299.99990 * 16 14 12 20 20 C 1.38192 * 120.01296 * 0.23355 * 5 4 3 21 21 C 1.38334 * 120.00345 * 179.97438 * 2 1 3 22 22 Cl 1.73605 * 120.01432 * 0.04310 * 21 2 1 23 23 H 1.09003 * 109.47008 * 90.00122 * 1 2 3 24 24 H 1.08998 * 109.47437 * 209.99916 * 1 2 3 25 25 H 1.08997 * 109.47063 * 330.00317 * 1 2 3 26 26 H 1.08003 * 119.99160 * 359.95623 * 3 2 1 27 27 H 1.07996 * 119.98312 * 180.02562 * 4 3 2 28 28 H 1.09001 * 109.47558 * 330.00334 * 6 5 4 29 29 H 1.08998 * 109.47216 * 209.99996 * 6 5 4 30 30 H 1.00901 * 110.99869 * 56.04737 * 7 6 5 31 31 H 1.09004 * 109.47031 * 299.99620 * 8 7 6 32 32 H 1.08995 * 109.47111 * 59.99900 * 8 7 6 33 33 H 1.09002 * 109.47301 * 60.00027 * 10 9 8 34 34 H 1.09001 * 109.47017 * 180.02562 * 10 9 8 35 35 H 1.09005 * 109.47249 * 300.00302 * 10 9 8 36 36 H 1.09001 * 109.46999 * 60.00126 * 11 9 8 37 37 H 1.09001 * 109.46478 * 179.97438 * 11 9 8 38 38 H 1.08993 * 109.47197 * 299.99817 * 11 9 8 39 39 H 0.97007 * 120.00038 * 179.97438 * 15 14 12 40 40 H 1.08003 * 120.00650 * 179.74550 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1970 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2726 0.0001 0.0005 6 6 5.7795 0.0011 0.0005 7 7 6.2692 0.0014 1.3856 8 6 7.7377 0.0030 1.4248 9 6 8.2090 0.0027 2.8804 10 6 7.6786 1.2509 3.5885 11 6 7.6813 -1.2476 3.5870 12 6 9.7155 0.0037 2.9205 13 1 10.2802 0.0041 2.0000 14 6 10.3728 0.0041 4.1326 15 7 9.6850 0.0031 5.2535 16 14 12.2401 0.0046 4.1824 17 1 12.7532 1.2172 3.4957 18 1 12.6975 0.0044 5.5952 19 1 12.7539 -1.2078 3.4960 20 6 3.5825 -1.1972 -0.0049 21 6 2.1988 -1.1980 0.0005 22 17 1.3312 -2.7017 0.0001 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6584 2.1323 -0.0007 27 1 4.1202 2.1326 0.0010 28 1 6.1423 0.8914 -0.5132 29 1 6.1435 -0.8886 -0.5133 30 1 5.8942 -0.7802 1.9018 31 1 8.1156 -0.8865 0.9207 32 1 8.1136 0.8935 0.9210 33 1 6.5889 1.2498 3.5594 34 1 8.0147 1.2509 4.6254 35 1 8.0545 2.1416 3.0850 36 1 8.0592 -2.1368 3.0824 37 1 8.0175 -1.2480 4.6238 38 1 6.5917 -1.2488 3.5579 39 1 10.1474 0.0030 6.1063 40 1 4.1231 -2.1322 -0.0090 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459736222.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:37 Heat of formation + Delta-G solvation = 1.086356 kcal Electronic energy + Delta-G solvation = -19457.688836 eV Core-core repulsion = 16490.370715 eV Total energy + Delta-G solvation = -2967.318121 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.66580 -37.05742 -36.47302 -34.53036 -32.54904 -30.80568 -30.72361 -27.84529 -25.55854 -25.21891 -24.60512 -22.96538 -22.71105 -20.85123 -18.46754 -16.63027 -16.03541 -15.79661 -15.38819 -14.94529 -14.49724 -14.33946 -13.91605 -13.89138 -13.43492 -12.70542 -12.63063 -12.49190 -12.38008 -12.10174 -11.79563 -11.53913 -11.41621 -11.27300 -11.10255 -10.96792 -10.79122 -10.64131 -10.56570 -10.17458 -10.05841 -9.38384 -9.12366 -8.90496 -8.65167 -8.55471 -8.28443 -7.73903 -5.90708 -4.01427 1.11334 1.19374 2.05204 3.32889 3.37810 3.40173 3.52768 4.44117 4.59544 4.64896 4.86036 5.03323 5.05606 5.29425 5.34605 5.40186 5.42057 5.49172 5.61056 5.79042 5.85337 5.98939 6.12726 6.30030 6.32665 6.36269 6.56863 6.71479 6.76139 6.89055 7.07654 7.16917 7.38445 7.46206 7.69626 7.76153 7.82720 7.93164 8.21218 8.34731 8.55791 8.99797 9.63543 11.09724 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.032981 B = 0.003242 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.760403 B = 8634.400572 C = 8889.557643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.084 4.084 3 C -0.111 4.111 4 C -0.089 4.089 5 C -0.064 4.064 6 C 0.094 3.906 7 N -0.680 5.680 8 C 0.075 3.925 9 C 0.069 3.931 10 C -0.119 4.119 11 C -0.132 4.132 12 C -0.508 4.508 13 H 0.051 0.949 14 C 0.066 3.934 15 N -0.884 5.884 16 Si 0.889 3.111 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.279 1.279 20 C -0.103 4.103 21 C -0.037 4.037 22 Cl -0.076 7.076 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.129 0.871 27 H 0.131 0.869 28 H 0.079 0.921 29 H 0.033 0.967 30 H 0.339 0.661 31 H 0.014 0.986 32 H 0.057 0.943 33 H 0.020 0.980 34 H 0.074 0.926 35 H 0.017 0.983 36 H 0.018 0.982 37 H 0.083 0.917 38 H 0.011 0.989 39 H 0.259 0.741 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.629 -0.448 -10.849 19.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.085 4.085 3 C -0.129 4.129 4 C -0.107 4.107 5 C -0.065 4.065 6 C -0.035 4.035 7 N -0.313 5.313 8 C -0.053 4.053 9 C 0.069 3.931 10 C -0.176 4.176 11 C -0.190 4.190 12 C -0.547 4.547 13 H 0.070 0.930 14 C -0.135 4.135 15 N -0.523 5.523 16 Si 0.717 3.283 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.205 1.205 20 C -0.122 4.122 21 C -0.063 4.063 22 Cl -0.047 7.047 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.147 0.853 27 H 0.149 0.851 28 H 0.097 0.903 29 H 0.051 0.949 30 H 0.158 0.842 31 H 0.032 0.968 32 H 0.076 0.924 33 H 0.039 0.961 34 H 0.092 0.908 35 H 0.037 0.963 36 H 0.038 0.962 37 H 0.102 0.898 38 H 0.029 0.971 39 H 0.069 0.931 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.704 0.094 -10.574 19.770 hybrid contribution 1.262 -1.101 -0.223 1.689 sum -15.443 -1.007 -10.796 18.869 Atomic orbital electron populations 1.20841 0.90585 1.03337 1.02599 1.19721 0.96523 0.91512 1.00740 1.20986 0.94203 0.96911 1.00831 1.21165 0.93741 0.98245 0.97584 1.19878 0.96135 0.92212 0.98236 1.20907 0.89025 1.01092 0.92462 1.60674 1.10494 1.50120 1.09977 1.22192 0.83975 0.98430 1.00744 1.18089 0.94184 0.92825 0.88041 1.21636 0.96456 0.96742 1.02803 1.21835 0.95400 0.97434 1.04348 1.21073 0.90831 1.50628 0.92188 0.93042 1.24883 0.97821 0.95098 0.95739 1.69825 1.34602 1.50675 0.97193 0.86717 0.86249 0.78480 0.76844 1.20392 1.21363 1.20480 1.20958 0.91805 0.98891 1.00547 1.20727 0.92227 0.86417 1.06928 1.98345 1.76946 1.32440 1.96992 0.90967 0.90975 0.91202 0.85277 0.85135 0.90301 0.94892 0.84174 0.96772 0.92425 0.96104 0.90760 0.96331 0.96234 0.89812 0.97055 0.93123 0.85242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 9.62 36.01 0.35 -0.64 16 2 C -0.08 -0.92 5.88 -104.59 -0.62 -1.54 16 3 C -0.11 -1.19 9.70 -39.59 -0.38 -1.57 16 4 C -0.09 -1.06 9.70 -39.58 -0.38 -1.45 16 5 C -0.06 -0.84 5.39 -104.63 -0.56 -1.40 16 6 C 0.09 1.35 5.81 -4.97 -0.03 1.32 16 7 N -0.68 -11.96 5.70 -115.05 -0.66 -12.61 16 8 C 0.07 1.53 4.59 -3.82 -0.02 1.52 16 9 C 0.07 1.66 0.57 -155.66 -0.09 1.58 16 10 C -0.12 -2.89 8.09 37.16 0.30 -2.59 16 11 C -0.13 -3.13 7.92 37.16 0.29 -2.84 16 12 C -0.51 -13.65 8.01 -34.44 -0.28 -13.93 16 13 H 0.05 1.37 7.74 -52.49 -0.41 0.97 16 14 C 0.07 1.78 5.15 -17.82 -0.09 1.68 16 15 N -0.88 -24.49 9.35 55.43 0.52 -23.98 16 16 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C -0.10 -1.31 9.49 -39.55 -0.38 -1.68 16 21 C -0.04 -0.44 6.31 -39.50 -0.25 -0.69 16 22 Cl -0.08 -0.85 27.30 -51.86 -1.42 -2.26 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.62 6.90 -51.93 -0.36 0.26 16 25 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 26 H 0.13 1.07 8.06 -52.48 -0.42 0.64 16 27 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 28 H 0.08 1.08 8.09 -51.93 -0.42 0.66 16 29 H 0.03 0.46 8.08 -51.93 -0.42 0.04 16 30 H 0.34 6.05 6.76 -39.29 -0.27 5.78 16 31 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.02 0.46 7.60 -51.93 -0.39 0.07 16 34 H 0.07 1.99 6.07 -51.93 -0.32 1.67 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 38 H 0.01 0.23 6.57 -51.93 -0.34 -0.11 16 39 H 0.26 6.92 8.31 -40.82 -0.34 6.59 16 40 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 334.61 15.07 5.04 5.04 Total: -1.00 -27.41 334.61 -9.84 -37.25 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -6.17 Total: 2.73 kcal Atomic # 6 Polarization: -20.10 SS G_CDS: -2.13 Total: -22.23 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: -0.14 Total: -36.59 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.42 Total: -2.26 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.41 -9.84 -37.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459736222.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.336 kcal (2) G-P(sol) polarization free energy of solvation -27.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds