Wall clock time and date at job start Tue Mar 31 2020 05:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38229 * 120.00928 * 2 1 4 4 C 1.38224 * 120.01489 * 179.97438 * 3 2 1 5 5 C 1.38262 * 120.02428 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99069 * 179.97438 * 5 4 3 7 7 N 1.46905 * 109.47066 * 90.00171 * 6 5 4 8 8 C 1.46901 * 110.99870 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.46916 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.46923 * 299.99733 * 9 8 7 11 11 C 1.52999 * 109.46998 * 59.99872 * 9 8 7 12 12 C 1.50703 * 109.46807 * 179.97438 * 9 8 7 13 13 H 1.07995 * 120.00107 * 359.97438 * 12 9 8 14 14 C 1.37878 * 119.99714 * 179.97438 * 12 9 8 15 15 N 1.31510 * 119.99944 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 119.99765 * 179.97438 * 14 12 9 17 17 H 1.48494 * 109.47051 * 60.00574 * 16 14 12 18 18 H 1.48501 * 109.46677 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47226 * 299.99990 * 16 14 12 20 20 C 1.38192 * 120.01296 * 0.23355 * 5 4 3 21 21 C 1.38334 * 120.00345 * 179.97438 * 2 1 3 22 22 Cl 1.73605 * 120.01432 * 0.04310 * 21 2 1 23 23 H 1.09003 * 109.47008 * 90.00122 * 1 2 3 24 24 H 1.08998 * 109.47437 * 209.99916 * 1 2 3 25 25 H 1.08997 * 109.47063 * 330.00317 * 1 2 3 26 26 H 1.08003 * 119.99160 * 359.95623 * 3 2 1 27 27 H 1.07996 * 119.98312 * 180.02562 * 4 3 2 28 28 H 1.09001 * 109.47558 * 330.00334 * 6 5 4 29 29 H 1.08998 * 109.47216 * 209.99996 * 6 5 4 30 30 H 1.00901 * 110.99869 * 56.04737 * 7 6 5 31 31 H 1.09004 * 109.47031 * 299.99620 * 8 7 6 32 32 H 1.08995 * 109.47111 * 59.99900 * 8 7 6 33 33 H 1.09002 * 109.47301 * 60.00027 * 10 9 8 34 34 H 1.09001 * 109.47017 * 180.02562 * 10 9 8 35 35 H 1.09005 * 109.47249 * 300.00302 * 10 9 8 36 36 H 1.09001 * 109.46999 * 60.00126 * 11 9 8 37 37 H 1.09001 * 109.46478 * 179.97438 * 11 9 8 38 38 H 1.08993 * 109.47197 * 299.99817 * 11 9 8 39 39 H 0.97007 * 120.00038 * 179.97438 * 15 14 12 40 40 H 1.08003 * 120.00650 * 179.74550 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1970 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2726 0.0001 0.0005 6 6 5.7795 0.0011 0.0005 7 7 6.2692 0.0014 1.3856 8 6 7.7377 0.0030 1.4248 9 6 8.2090 0.0027 2.8804 10 6 7.6786 1.2509 3.5885 11 6 7.6813 -1.2476 3.5870 12 6 9.7155 0.0037 2.9205 13 1 10.2802 0.0041 2.0000 14 6 10.3728 0.0041 4.1326 15 7 9.6850 0.0031 5.2535 16 14 12.2401 0.0046 4.1824 17 1 12.7532 1.2172 3.4957 18 1 12.6975 0.0044 5.5952 19 1 12.7539 -1.2078 3.4960 20 6 3.5825 -1.1972 -0.0049 21 6 2.1988 -1.1980 0.0005 22 17 1.3312 -2.7017 0.0001 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6584 2.1323 -0.0007 27 1 4.1202 2.1326 0.0010 28 1 6.1423 0.8914 -0.5132 29 1 6.1435 -0.8886 -0.5133 30 1 5.8942 -0.7802 1.9018 31 1 8.1156 -0.8865 0.9207 32 1 8.1136 0.8935 0.9210 33 1 6.5889 1.2498 3.5594 34 1 8.0147 1.2509 4.6254 35 1 8.0545 2.1416 3.0850 36 1 8.0592 -2.1368 3.0824 37 1 8.0175 -1.2480 4.6238 38 1 6.5917 -1.2488 3.5579 39 1 10.1474 0.0030 6.1063 40 1 4.1231 -2.1322 -0.0090 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459736222.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:37 Heat of formation + Delta-G solvation = -11.812922 kcal Electronic energy + Delta-G solvation = -19458.248191 eV Core-core repulsion = 16490.370715 eV Total energy + Delta-G solvation = -2967.877475 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.57527 -38.62913 -37.44865 -35.92511 -33.91059 -32.38454 -31.67959 -28.91758 -27.50381 -27.23388 -25.92842 -24.19763 -23.71716 -21.78462 -20.33394 -18.02613 -17.48961 -16.95137 -16.65971 -16.24608 -15.95550 -15.61575 -15.12515 -14.92997 -14.63818 -14.26197 -13.98081 -13.85940 -13.35194 -13.27178 -13.13933 -12.96958 -12.77050 -12.62879 -12.51995 -12.35972 -12.26198 -12.15769 -12.07121 -12.03678 -11.64764 -11.30252 -10.94302 -10.60146 -10.33388 -9.80052 -9.50370 -9.15120 -7.95675 -6.12888 0.20972 0.30018 1.16969 1.44422 1.44979 1.51834 2.46897 2.61641 3.26355 3.55263 3.78761 3.83095 4.00840 4.20164 4.34540 4.47441 4.54457 4.64789 4.71985 4.73512 4.80025 4.81587 4.88524 4.98050 5.03648 5.17160 5.21265 5.28598 5.29244 5.44260 5.47409 5.54431 5.61943 5.70653 5.77667 5.89131 6.16034 6.24086 6.34216 6.48779 6.60677 6.96690 7.54764 9.02232 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.032981 B = 0.003242 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.760403 B = 8634.400572 C = 8889.557643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.085 4.085 3 C -0.110 4.110 4 C -0.096 4.096 5 C -0.078 4.078 6 C 0.099 3.901 7 N -0.682 5.682 8 C 0.089 3.911 9 C 0.059 3.941 10 C -0.104 4.104 11 C -0.121 4.121 12 C -0.528 4.528 13 H 0.046 0.954 14 C 0.022 3.978 15 N -0.903 5.903 16 Si 0.944 3.056 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.276 1.276 20 C -0.112 4.112 21 C -0.050 4.050 22 Cl -0.072 7.072 23 H 0.084 0.916 24 H 0.068 0.932 25 H 0.086 0.914 26 H 0.157 0.843 27 H 0.138 0.862 28 H 0.084 0.916 29 H 0.037 0.963 30 H 0.337 0.663 31 H 0.010 0.990 32 H 0.054 0.946 33 H 0.033 0.967 34 H 0.047 0.953 35 H 0.012 0.988 36 H 0.016 0.984 37 H 0.055 0.945 38 H 0.031 0.969 39 H 0.257 0.743 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.780 -0.003 -11.771 21.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.086 4.086 3 C -0.128 4.128 4 C -0.114 4.114 5 C -0.079 4.079 6 C -0.030 4.030 7 N -0.314 5.314 8 C -0.039 4.039 9 C 0.059 3.941 10 C -0.162 4.162 11 C -0.179 4.179 12 C -0.567 4.567 13 H 0.065 0.935 14 C -0.177 4.177 15 N -0.542 5.542 16 Si 0.771 3.229 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.131 4.131 21 C -0.077 4.077 22 Cl -0.043 7.043 23 H 0.103 0.897 24 H 0.087 0.913 25 H 0.105 0.895 26 H 0.174 0.826 27 H 0.156 0.844 28 H 0.103 0.897 29 H 0.055 0.945 30 H 0.156 0.844 31 H 0.029 0.971 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.031 0.969 36 H 0.035 0.965 37 H 0.074 0.926 38 H 0.050 0.950 39 H 0.067 0.933 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.865 0.538 -11.509 21.258 hybrid contribution 1.535 -1.239 0.040 1.973 sum -16.330 -0.701 -11.469 19.967 Atomic orbital electron populations 1.20904 0.88756 1.04039 1.03594 1.20091 0.97959 0.91169 0.99397 1.21297 0.93788 0.97973 0.99707 1.21354 0.94571 0.98108 0.97401 1.19764 0.95247 0.92922 0.99959 1.20892 0.90095 1.01549 0.90456 1.60593 1.08439 1.50066 1.12261 1.21850 0.85929 0.98079 0.98089 1.18146 0.93045 0.92637 0.90302 1.21455 0.97056 0.96713 1.00972 1.21663 0.96603 0.97229 1.02358 1.21426 0.92581 1.50638 0.92064 0.93545 1.25542 1.01583 0.95001 0.95573 1.69965 1.35807 1.51080 0.97394 0.85832 0.81797 0.78495 0.76758 1.20031 1.21193 1.20120 1.21015 0.92338 0.98845 1.00947 1.20886 0.92209 0.87167 1.07407 1.98343 1.76726 1.32245 1.96994 0.89719 0.91277 0.89534 0.82580 0.84411 0.89735 0.94459 0.84377 0.97130 0.92795 0.94833 0.93441 0.96925 0.96467 0.92626 0.95020 0.93343 0.85308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.65 9.62 71.24 0.69 -0.97 16 2 C -0.09 -1.68 5.88 -19.84 -0.12 -1.79 16 3 C -0.11 -2.06 9.70 22.26 0.22 -1.84 16 4 C -0.10 -2.11 9.70 22.27 0.22 -1.90 16 5 C -0.08 -1.95 5.39 -19.87 -0.11 -2.05 16 6 C 0.10 2.70 5.81 85.55 0.50 3.20 16 7 N -0.68 -23.21 5.70 -517.92 -2.95 -26.17 16 8 C 0.09 3.61 4.59 86.30 0.40 4.01 16 9 C 0.06 2.85 0.57 -52.93 -0.03 2.82 16 10 C -0.10 -5.07 8.09 71.98 0.58 -4.48 16 11 C -0.12 -5.70 7.92 71.98 0.57 -5.13 16 12 C -0.53 -28.45 8.01 25.60 0.21 -28.24 16 13 H 0.05 2.48 7.74 -2.91 -0.02 2.46 16 14 C 0.02 1.20 5.15 84.66 0.44 1.63 16 15 N -0.90 -50.57 9.35 21.45 0.20 -50.37 16 16 Si 0.94 43.26 29.54 68.60 2.03 45.29 16 17 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 18 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 20 C -0.11 -2.74 9.49 22.29 0.21 -2.52 16 21 C -0.05 -1.14 6.31 22.32 0.14 -1.00 16 22 Cl -0.07 -1.51 27.30 -2.72 -0.07 -1.58 16 23 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 24 H 0.07 1.04 6.90 -2.39 -0.02 1.02 16 25 H 0.09 0.95 8.09 -2.39 -0.02 0.93 16 26 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 27 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 28 H 0.08 2.21 8.09 -2.39 -0.02 2.19 16 29 H 0.04 0.99 8.08 -2.39 -0.02 0.97 16 30 H 0.34 11.66 6.76 -89.69 -0.61 11.05 16 31 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.03 1.49 7.60 -2.39 -0.02 1.47 16 34 H 0.05 2.56 6.07 -2.39 -0.01 2.54 16 35 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 36 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.05 2.95 6.07 -2.39 -0.01 2.93 16 38 H 0.03 1.32 6.57 -2.39 -0.02 1.30 16 39 H 0.26 13.90 8.31 -92.70 -0.77 13.13 16 40 H 0.13 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -57.54 334.61 3.52 -54.03 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.42 Total: 17.09 kcal Atomic # 6 Polarization: -42.18 SS G_CDS: 3.90 Total: -38.28 kcal Atomic # 7 Polarization: -73.79 SS G_CDS: -2.75 Total: -76.54 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.07 Total: -1.58 kcal Total: -57.54 3.52 -54.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459736222.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.212 kcal (2) G-P(sol) polarization free energy of solvation -57.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds