Wall clock time and date at job start Tue Mar 31 2020 06:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47025 * 2 1 4 4 C 1.50700 * 109.47247 * 240.00423 * 2 1 3 5 5 H 1.07997 * 120.00065 * 240.00191 * 4 2 1 6 6 C 1.37882 * 120.00160 * 59.99510 * 4 2 1 7 7 N 1.31516 * 119.99705 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00118 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47089 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47384 * 120.00172 * 8 6 4 11 11 H 1.48503 * 109.46900 * 240.00289 * 8 6 4 12 12 C 1.52991 * 109.47456 * 120.00277 * 2 1 3 13 13 N 1.46903 * 109.47117 * 300.00347 * 12 2 1 14 14 C 1.46902 * 111.00086 * 179.97438 * 13 12 2 15 15 C 1.52997 * 109.47079 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47142 * 180.02562 * 15 14 13 17 17 C 1.38270 * 119.99101 * 270.27596 * 16 15 14 18 18 C 1.38215 * 120.02537 * 180.27948 * 17 16 15 19 19 C 1.38238 * 120.01126 * 359.44038 * 18 17 16 20 20 C 1.38325 * 119.98878 * 0.28199 * 19 18 17 21 21 Cl 1.73606 * 120.01335 * 179.97438 * 20 19 18 22 22 C 1.38193 * 119.99765 * 89.99998 * 16 15 14 23 23 H 1.08993 * 109.47184 * 299.99717 * 1 2 3 24 24 H 1.09002 * 109.47244 * 59.99842 * 1 2 3 25 25 H 1.09000 * 109.46765 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47446 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.47501 * 300.00644 * 3 2 1 28 28 H 1.09005 * 109.47014 * 60.00464 * 3 2 1 29 29 H 0.96995 * 119.99437 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.47565 * 180.02562 * 12 2 1 31 31 H 1.09009 * 109.47250 * 59.99970 * 12 2 1 32 32 H 1.00905 * 110.99888 * 303.94750 * 13 12 2 33 33 H 1.09004 * 109.46834 * 59.99593 * 14 13 12 34 34 H 1.08998 * 109.47284 * 299.99738 * 14 13 12 35 35 H 1.08998 * 109.47471 * 59.99707 * 15 14 13 36 36 H 1.09000 * 109.47154 * 299.99569 * 15 14 13 37 37 H 1.07997 * 119.98420 * 0.02562 * 17 16 15 38 38 H 1.08002 * 119.99636 * 179.72646 * 18 17 16 39 39 H 1.07999 * 120.00577 * 180.25936 * 19 18 17 40 40 H 1.08003 * 120.00423 * 0.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3213 -1.1201 -4.0081 9 1 3.1466 -2.2868 -3.6039 10 1 1.1661 -1.5865 -4.8162 11 1 3.1466 -0.1870 -4.8165 12 6 2.0400 -0.7213 1.2491 13 7 1.5503 -0.0289 2.4486 14 6 2.0209 -0.6954 3.6702 15 6 1.4924 0.0531 4.8955 16 6 1.9757 -0.6303 6.1487 17 6 1.2221 -1.6387 6.7205 18 6 1.6618 -2.2620 7.8731 19 6 2.8610 -1.8854 8.4484 20 6 3.6182 -0.8805 7.8736 21 17 5.1240 -0.4066 8.5959 22 6 3.1746 -0.2529 6.7230 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6765 1.9564 -0.8899 28 1 1.6767 1.9563 0.8901 29 1 0.7094 1.1619 -3.4843 30 1 3.1301 -0.7209 1.2494 31 1 1.6767 -1.7490 1.2491 32 1 1.8198 0.9435 2.4402 33 1 3.1108 -0.6955 3.6872 34 1 1.6572 -1.7227 3.6868 35 1 0.4025 0.0537 4.8787 36 1 1.8566 1.0803 4.8788 37 1 0.2875 -1.9366 6.2686 38 1 1.0706 -3.0466 8.3219 39 1 3.2066 -2.3753 9.3467 40 1 3.7651 0.5320 6.2739 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459738025.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:02 Heat of formation + Delta-G solvation = -0.500209 kcal Electronic energy + Delta-G solvation = -19114.015764 eV Core-core repulsion = 16146.628845 eV Total energy + Delta-G solvation = -2967.386919 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.66221 -37.13253 -36.66553 -34.72471 -32.54576 -30.97499 -30.71075 -27.91423 -25.56021 -25.20818 -24.13320 -22.89380 -22.37940 -21.02524 -18.43898 -17.12924 -16.03679 -15.89664 -15.68252 -15.22688 -14.61500 -14.29045 -13.92823 -13.86445 -13.49633 -13.04819 -12.80927 -12.44622 -12.11092 -11.98881 -11.72968 -11.58952 -11.42815 -11.16014 -11.04567 -10.97055 -10.85861 -10.60243 -10.54935 -10.16442 -10.05339 -9.38210 -9.18957 -9.04428 -8.82289 -8.61234 -8.29108 -7.72661 -5.91146 -4.01400 0.94027 1.04003 1.89846 3.30482 3.38836 3.39502 3.42582 4.39339 4.48166 4.57402 4.79833 4.98529 5.05901 5.16649 5.22076 5.34462 5.38047 5.55418 5.62344 5.79775 5.96051 5.99607 6.10741 6.18513 6.33750 6.37642 6.45787 6.59241 6.72079 6.89525 7.07709 7.17037 7.38247 7.46922 7.72205 7.76357 7.83256 7.96611 8.21626 8.34968 8.56387 9.00345 9.63694 11.09438 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.031005 B = 0.002794 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.856643 B =10019.885885 C =10270.959496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.068 3.932 3 C -0.133 4.133 4 C -0.506 4.506 5 H 0.052 0.948 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.888 3.112 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.075 3.925 13 N -0.687 5.687 14 C 0.065 3.935 15 C -0.081 4.081 16 C -0.059 4.059 17 C -0.111 4.111 18 C -0.106 4.106 19 C -0.121 4.121 20 C -0.033 4.033 21 Cl -0.076 7.076 22 C -0.109 4.109 23 H 0.020 0.980 24 H 0.074 0.926 25 H 0.018 0.982 26 H 0.018 0.982 27 H 0.083 0.917 28 H 0.011 0.989 29 H 0.257 0.743 30 H 0.013 0.987 31 H 0.056 0.944 32 H 0.337 0.663 33 H 0.022 0.978 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.387 -2.582 21.104 21.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.068 3.932 3 C -0.190 4.190 4 C -0.545 4.545 5 H 0.070 0.930 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.716 3.284 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.212 1.212 12 C -0.053 4.053 13 N -0.319 5.319 14 C -0.065 4.065 15 C -0.119 4.119 16 C -0.060 4.060 17 C -0.129 4.129 18 C -0.124 4.124 19 C -0.139 4.139 20 C -0.059 4.059 21 Cl -0.047 7.047 22 C -0.128 4.128 23 H 0.039 0.961 24 H 0.093 0.907 25 H 0.037 0.963 26 H 0.038 0.962 27 H 0.102 0.898 28 H 0.030 0.970 29 H 0.067 0.933 30 H 0.031 0.969 31 H 0.074 0.926 32 H 0.156 0.844 33 H 0.040 0.960 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.844 -2.756 21.010 21.270 hybrid contribution 1.531 -0.253 -0.768 1.732 sum 3.375 -3.009 20.242 20.741 Atomic orbital electron populations 1.21641 0.97400 0.98574 1.00091 1.18094 0.93207 0.91967 0.89958 1.21838 0.97701 0.99189 1.00305 1.21162 1.31002 1.11850 0.90510 0.92960 1.24890 0.95034 0.94984 0.98704 1.69845 1.36890 1.22833 1.22797 0.86605 0.78610 0.79734 0.83414 1.19946 1.21099 1.21171 1.22151 0.95503 0.97820 0.89800 1.60606 1.63696 1.06398 1.01227 1.21874 0.96621 0.98513 0.89511 1.20656 1.02161 0.98766 0.90296 1.19944 0.93622 0.95980 0.96463 1.21249 1.00341 0.95685 0.95626 1.21118 0.95613 0.99810 0.95894 1.21019 0.95057 0.97027 1.00828 1.20921 0.89334 0.99147 0.96510 1.98370 1.31933 1.91478 1.82961 1.21002 0.96549 1.00668 0.94564 0.96083 0.90742 0.96323 0.96243 0.89808 0.97024 0.93253 0.96895 0.92583 0.84417 0.95959 0.91380 0.89615 0.90910 0.85108 0.85124 0.85216 0.85001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.90 8.09 37.16 0.30 -2.60 16 2 C 0.07 1.65 0.57 -155.67 -0.09 1.56 16 3 C -0.13 -3.11 7.92 37.15 0.29 -2.82 16 4 C -0.51 -13.67 8.01 -34.44 -0.28 -13.94 16 5 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 6 C 0.06 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.88 -24.48 9.35 55.43 0.52 -23.96 16 8 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 C 0.08 1.57 4.59 -3.83 -0.02 1.56 16 13 N -0.69 -11.94 5.71 -113.78 -0.65 -12.59 16 14 C 0.06 0.92 5.67 -3.82 -0.02 0.89 16 15 C -0.08 -0.93 5.60 -27.88 -0.16 -1.09 16 16 C -0.06 -0.64 5.13 -104.63 -0.54 -1.17 16 17 C -0.11 -1.07 9.70 -39.58 -0.38 -1.46 16 18 C -0.11 -0.92 10.05 -39.59 -0.40 -1.31 16 19 C -0.12 -1.10 9.83 -39.55 -0.39 -1.49 16 20 C -0.03 -0.34 6.32 -39.50 -0.25 -0.59 16 21 Cl -0.08 -0.76 28.96 -51.86 -1.50 -2.26 16 22 C -0.11 -1.18 9.49 -39.55 -0.38 -1.55 16 23 H 0.02 0.46 7.60 -51.93 -0.39 0.07 16 24 H 0.07 1.98 6.07 -51.93 -0.32 1.67 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 28 H 0.01 0.23 6.57 -51.93 -0.34 -0.11 16 29 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 1.20 8.14 -51.92 -0.42 0.77 16 32 H 0.34 5.74 6.77 -39.29 -0.27 5.47 16 33 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.09 0.98 8.09 -51.93 -0.42 0.56 16 36 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 37 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 38 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.13 1.34 8.06 -52.48 -0.42 0.91 16 LS Contribution 337.39 15.07 5.08 5.08 Total: -1.00 -27.57 337.39 -10.20 -37.77 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.24 Total: 2.21 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: -2.39 Total: -22.35 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: -0.13 Total: -36.55 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.50 Total: -2.26 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.57 -10.20 -37.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459738025.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.268 kcal (2) G-P(sol) polarization free energy of solvation -27.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds