Wall clock time and date at job start Tue Mar 31 2020 05:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46595 * 186.75856 * 3 2 1 5 5 C 1.36932 * 120.00047 * 263.80963 * 4 3 2 6 6 H 1.08002 * 120.00183 * 199.91493 * 5 4 3 7 7 C 1.38813 * 120.00238 * 19.91136 * 5 4 3 8 8 N 1.31624 * 119.99412 * 15.69281 * 7 5 4 9 9 Si 1.86798 * 120.00332 * 195.68892 * 7 5 4 10 10 H 1.48494 * 109.47160 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46910 * 120.00048 * 9 7 5 12 12 H 1.48496 * 109.47228 * 239.99867 * 9 7 5 13 13 C 1.46504 * 120.00068 * 83.81162 * 4 3 2 14 14 C 1.50701 * 109.47083 * 95.15519 * 13 4 3 15 15 N 1.31359 * 119.64246 * 82.92033 * 14 13 4 16 16 C 1.33723 * 119.70328 * 179.97438 * 15 14 13 17 17 C 1.40597 * 121.10796 * 179.97438 * 16 15 14 18 18 C 1.36055 * 119.71481 * 180.02562 * 17 16 15 19 19 C 1.39412 * 120.97238 * 359.97438 * 18 17 16 20 20 C 1.36055 * 120.97591 * 359.97438 * 19 18 17 21 21 C 1.40602 * 119.71407 * 0.02562 * 20 19 18 22 22 N 1.33717 * 121.10510 * 179.97438 * 21 20 19 23 23 C 1.31366 * 119.70282 * 179.75516 * 22 21 20 24 24 C 1.50702 * 119.64321 * 180.27164 * 23 22 21 25 25 H 4.40638 * 5.51422 * 179.97438 * 4 1 2 26 26 H 1.08989 * 109.47427 * 66.76026 * 3 2 1 27 27 H 1.09002 * 109.47327 * 306.75245 * 3 2 1 28 28 H 0.97006 * 119.99589 * 179.97438 * 8 7 5 29 29 H 1.09009 * 109.46795 * 215.15174 * 13 4 3 30 30 H 1.09000 * 109.47104 * 335.15149 * 13 4 3 31 31 H 1.08003 * 120.13982 * 0.02562 * 17 16 15 32 32 H 1.07994 * 119.51354 * 179.97438 * 18 17 16 33 33 H 1.08002 * 119.51207 * 180.02562 * 19 18 17 34 34 H 1.08005 * 120.14601 * 180.02562 * 20 19 18 35 35 H 1.09005 * 109.46605 * 264.24682 * 24 23 22 36 36 H 1.09001 * 109.47300 * 24.24392 * 24 23 22 37 37 H 1.09002 * 109.47207 * 144.24868 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.3725 0.1626 5 6 3.4820 2.1102 -0.9372 6 1 4.1269 2.9697 -0.8288 7 6 3.0064 1.7532 -2.1916 8 7 1.9946 0.9181 -2.2985 9 14 3.8023 2.4578 -3.7276 10 1 4.9118 3.3648 -3.3386 11 1 4.3374 1.3507 -4.5602 12 1 2.7907 3.2176 -4.5052 13 6 3.2485 1.9553 1.5018 14 6 4.6578 1.7809 2.0063 15 7 5.5873 2.6363 1.6461 16 6 6.8382 2.4830 2.0934 17 6 7.8561 3.3807 1.7262 18 6 9.1191 3.1975 2.1976 19 6 9.4220 2.1307 3.0423 20 6 8.4630 1.2424 3.4200 21 6 7.1459 1.3985 2.9534 22 7 6.1819 0.5418 3.3065 23 6 4.9595 0.7166 2.8583 24 6 3.8727 -0.2463 3.2620 25 1 -1.0503 -0.0004 -0.0002 26 1 3.0095 -0.4046 -0.9442 27 1 3.0097 -0.6141 0.8234 28 1 1.6620 0.6689 -3.1750 29 1 3.0072 3.0174 1.4578 30 1 2.5560 1.4530 2.1772 31 1 7.6362 4.2121 1.0728 32 1 9.8986 3.8888 1.9131 33 1 10.4326 2.0079 3.4030 34 1 8.7124 0.4210 4.0753 35 1 3.7573 -1.0079 2.4908 36 1 4.1409 -0.7221 4.2053 37 1 2.9341 0.2947 3.3818 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491387541.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:15 Heat of formation + Delta-G solvation = 152.811350 kcal Electronic energy + Delta-G solvation = -21253.996806 eV Core-core repulsion = 18192.150481 eV Total energy + Delta-G solvation = -3061.846325 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.12724 -37.75519 -36.03224 -34.53927 -32.57138 -31.57316 -31.10706 -30.09285 -27.93927 -26.97535 -25.90913 -23.39354 -22.82962 -22.01798 -21.17988 -18.15139 -17.81627 -17.35017 -16.38102 -15.89063 -15.49507 -14.91107 -14.64316 -14.13515 -13.70511 -13.60718 -13.51877 -13.25692 -12.96184 -12.59527 -12.39143 -11.86259 -11.64866 -11.51716 -11.30126 -11.18860 -11.13190 -11.05890 -10.87345 -10.63882 -10.19507 -10.00743 -9.01884 -8.98113 -8.68560 -8.44494 -8.40954 -8.35680 -7.04802 -5.79997 -3.27063 0.48872 0.85056 2.22322 2.99036 3.35952 3.44269 3.47740 4.08789 4.21751 4.31787 4.36062 4.45876 4.53811 4.58274 4.87460 4.99541 5.17305 5.26408 5.34125 5.42178 5.57270 5.60335 5.69286 5.75186 5.84260 6.01883 6.05734 6.13696 6.18755 6.28696 6.40707 6.45405 6.63872 6.67680 6.91906 7.20710 7.39644 7.69097 7.81768 8.18830 8.26155 9.08624 9.16454 9.70577 10.14623 11.23142 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016857 B = 0.006073 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.593463 B = 4609.373762 C = 5932.477073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 C -0.093 4.093 3 C 0.264 3.736 4 N -0.571 5.571 5 C -0.258 4.258 6 H 0.082 0.918 7 C 0.003 3.997 8 N -0.895 5.895 9 Si 0.904 3.096 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.290 1.290 13 C 0.187 3.813 14 C 0.115 3.885 15 N -0.409 5.409 16 C 0.076 3.924 17 C -0.078 4.078 18 C -0.113 4.113 19 C -0.111 4.111 20 C -0.085 4.085 21 C 0.070 3.930 22 N -0.441 5.441 23 C 0.117 3.883 24 C -0.106 4.106 25 H 0.190 0.810 26 H 0.100 0.900 27 H 0.036 0.964 28 H 0.254 0.746 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.136 0.864 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.132 0.868 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.922 -0.092 11.321 14.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 C -0.096 4.096 3 C 0.139 3.861 4 N -0.290 5.290 5 C -0.387 4.387 6 H 0.100 0.900 7 C -0.195 4.195 8 N -0.538 5.538 9 Si 0.734 3.266 10 H -0.202 1.202 11 H -0.217 1.217 12 H -0.217 1.217 13 C 0.058 3.942 14 C -0.045 4.045 15 N -0.123 5.123 16 C -0.048 4.048 17 C -0.097 4.097 18 C -0.133 4.133 19 C -0.131 4.131 20 C -0.105 4.105 21 C -0.054 4.054 22 N -0.156 5.156 23 C -0.040 4.040 24 C -0.164 4.164 25 H 0.208 0.792 26 H 0.118 0.882 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.154 0.846 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.150 0.850 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.077 -0.061 11.127 14.360 hybrid contribution 0.190 0.376 -1.173 1.246 sum 9.267 0.315 9.954 13.604 Atomic orbital electron populations 1.24188 0.95327 1.04358 1.07966 1.24135 0.95101 0.96378 0.94018 1.17917 0.83050 0.85144 0.99967 1.43951 1.73868 1.10930 1.00212 1.19377 1.23933 1.10656 0.84708 0.90041 1.24979 0.96609 0.99740 0.98192 1.70063 1.23737 1.37447 1.22591 0.86188 0.78874 0.78317 0.83240 1.20205 1.21656 1.21721 1.19848 0.86484 0.99824 0.88060 1.24010 0.99934 0.89890 0.90656 1.68712 0.99086 1.26496 1.18017 1.19746 0.93096 0.95496 0.96449 1.20835 0.91408 0.98416 0.99050 1.20884 0.96477 0.98183 0.97738 1.20865 0.99374 0.94795 0.98045 1.20713 0.90353 0.99653 0.99750 1.19544 0.94617 0.93394 0.97849 1.68468 1.00026 1.25216 1.21886 1.22454 0.92840 0.95194 0.93469 1.20903 0.95144 0.97702 1.02616 0.79229 0.88247 0.94596 0.93538 0.91145 0.91114 0.84599 0.85303 0.85372 0.84980 0.89338 0.90537 0.89556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.52 19.25 29.55 0.57 -5.95 16 2 C -0.09 -2.17 11.53 -37.12 -0.43 -2.60 16 3 C 0.26 6.01 5.38 -6.83 -0.04 5.97 16 4 N -0.57 -13.50 2.48 -177.94 -0.44 -13.94 16 5 C -0.26 -6.87 9.66 -15.06 -0.15 -7.01 16 6 H 0.08 2.22 7.88 -52.49 -0.41 1.81 16 7 C 0.00 0.09 4.99 -17.43 -0.09 0.00 16 8 N -0.89 -25.00 9.24 55.49 0.51 -24.49 16 9 Si 0.90 21.85 29.58 -169.99 -5.03 16.82 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 C 0.19 3.71 5.71 -5.19 -0.03 3.68 16 14 C 0.11 2.20 6.34 -82.27 -0.52 1.68 16 15 N -0.41 -8.28 10.38 -7.06 -0.07 -8.35 16 16 C 0.08 1.39 6.59 -84.80 -0.56 0.83 16 17 C -0.08 -1.16 9.99 -39.48 -0.39 -1.55 16 18 C -0.11 -1.32 9.95 -39.93 -0.40 -1.71 16 19 C -0.11 -1.24 9.95 -39.93 -0.40 -1.63 16 20 C -0.09 -1.15 9.99 -39.47 -0.39 -1.54 16 21 C 0.07 1.21 6.59 -84.80 -0.56 0.65 16 22 N -0.44 -7.73 10.38 -7.06 -0.07 -7.81 16 23 C 0.12 2.01 6.79 -82.27 -0.56 1.45 16 24 C -0.11 -1.44 9.17 36.01 0.33 -1.11 16 25 H 0.19 3.46 7.80 -54.08 -0.42 3.04 16 26 H 0.10 2.54 6.41 -51.94 -0.33 2.21 16 27 H 0.04 0.70 5.84 -51.93 -0.30 0.40 16 28 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.07 1.45 8.08 -51.92 -0.42 1.03 16 30 H 0.07 1.22 5.64 -51.93 -0.29 0.93 16 31 H 0.14 1.90 8.06 -52.48 -0.42 1.48 16 32 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 35 H 0.09 1.20 6.38 -51.93 -0.33 0.87 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.09 1.07 6.15 -51.93 -0.32 0.75 16 LS Contribution 318.12 15.07 4.79 4.79 Total: -1.00 -31.42 318.12 -8.00 -39.42 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -4.08 Total: 2.41 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -3.61 Total: -8.86 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -0.08 Total: -54.58 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.42 -8.00 -39.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491387541.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.232 kcal (2) G-P(sol) polarization free energy of solvation -31.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds