Wall clock time and date at job start Tue Mar 31 2020 05:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46595 * 186.75856 * 3 2 1 5 5 C 1.36932 * 120.00047 * 263.80963 * 4 3 2 6 6 H 1.08002 * 120.00183 * 199.91493 * 5 4 3 7 7 C 1.38813 * 120.00238 * 19.91136 * 5 4 3 8 8 N 1.31624 * 119.99412 * 15.69281 * 7 5 4 9 9 Si 1.86798 * 120.00332 * 195.68892 * 7 5 4 10 10 H 1.48494 * 109.47160 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46910 * 120.00048 * 9 7 5 12 12 H 1.48496 * 109.47228 * 239.99867 * 9 7 5 13 13 C 1.46504 * 120.00068 * 83.81162 * 4 3 2 14 14 C 1.50701 * 109.47083 * 95.15519 * 13 4 3 15 15 N 1.31359 * 119.64246 * 82.92033 * 14 13 4 16 16 C 1.33723 * 119.70328 * 179.97438 * 15 14 13 17 17 C 1.40597 * 121.10796 * 179.97438 * 16 15 14 18 18 C 1.36055 * 119.71481 * 180.02562 * 17 16 15 19 19 C 1.39412 * 120.97238 * 359.97438 * 18 17 16 20 20 C 1.36055 * 120.97591 * 359.97438 * 19 18 17 21 21 C 1.40602 * 119.71407 * 0.02562 * 20 19 18 22 22 N 1.33717 * 121.10510 * 179.97438 * 21 20 19 23 23 C 1.31366 * 119.70282 * 179.75516 * 22 21 20 24 24 C 1.50702 * 119.64321 * 180.27164 * 23 22 21 25 25 H 4.40638 * 5.51422 * 179.97438 * 4 1 2 26 26 H 1.08989 * 109.47427 * 66.76026 * 3 2 1 27 27 H 1.09002 * 109.47327 * 306.75245 * 3 2 1 28 28 H 0.97006 * 119.99589 * 179.97438 * 8 7 5 29 29 H 1.09009 * 109.46795 * 215.15174 * 13 4 3 30 30 H 1.09000 * 109.47104 * 335.15149 * 13 4 3 31 31 H 1.08003 * 120.13982 * 0.02562 * 17 16 15 32 32 H 1.07994 * 119.51354 * 179.97438 * 18 17 16 33 33 H 1.08002 * 119.51207 * 180.02562 * 19 18 17 34 34 H 1.08005 * 120.14601 * 180.02562 * 20 19 18 35 35 H 1.09005 * 109.46605 * 264.24682 * 24 23 22 36 36 H 1.09001 * 109.47300 * 24.24392 * 24 23 22 37 37 H 1.09002 * 109.47207 * 144.24868 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.3725 0.1626 5 6 3.4820 2.1102 -0.9372 6 1 4.1269 2.9697 -0.8288 7 6 3.0064 1.7532 -2.1916 8 7 1.9946 0.9181 -2.2985 9 14 3.8023 2.4578 -3.7276 10 1 4.9118 3.3648 -3.3386 11 1 4.3374 1.3507 -4.5602 12 1 2.7907 3.2176 -4.5052 13 6 3.2485 1.9553 1.5018 14 6 4.6578 1.7809 2.0063 15 7 5.5873 2.6363 1.6461 16 6 6.8382 2.4830 2.0934 17 6 7.8561 3.3807 1.7262 18 6 9.1191 3.1975 2.1976 19 6 9.4220 2.1307 3.0423 20 6 8.4630 1.2424 3.4200 21 6 7.1459 1.3985 2.9534 22 7 6.1819 0.5418 3.3065 23 6 4.9595 0.7166 2.8583 24 6 3.8727 -0.2463 3.2620 25 1 -1.0503 -0.0004 -0.0002 26 1 3.0095 -0.4046 -0.9442 27 1 3.0097 -0.6141 0.8234 28 1 1.6620 0.6689 -3.1750 29 1 3.0072 3.0174 1.4578 30 1 2.5560 1.4530 2.1772 31 1 7.6362 4.2121 1.0728 32 1 9.8986 3.8888 1.9131 33 1 10.4326 2.0079 3.4030 34 1 8.7124 0.4210 4.0753 35 1 3.7573 -1.0079 2.4908 36 1 4.1409 -0.7221 4.2053 37 1 2.9341 0.2947 3.3818 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491387541.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:14 Heat of formation + Delta-G solvation = 134.225253 kcal Electronic energy + Delta-G solvation = -21254.802759 eV Core-core repulsion = 18192.150481 eV Total energy + Delta-G solvation = -3062.652279 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.37877 -38.99321 -37.67016 -35.85788 -34.05007 -33.38740 -32.53165 -31.45363 -29.10998 -28.46886 -27.78276 -24.93972 -24.02032 -23.16024 -22.83459 -19.57219 -19.08069 -18.96056 -18.08317 -17.24967 -17.08141 -16.24610 -15.97365 -15.48046 -15.34996 -15.23857 -14.99589 -14.47844 -14.17887 -14.00374 -13.68933 -13.41055 -13.13816 -12.85212 -12.71571 -12.61597 -12.55831 -12.46901 -12.34263 -12.22601 -12.12787 -11.90859 -10.88104 -10.75353 -10.29157 -10.04062 -9.67386 -9.48183 -8.93092 -7.84466 -5.31451 -0.68575 -0.36976 0.99910 1.40798 1.44090 1.53575 1.86158 2.36972 2.53446 2.62101 3.02575 3.09168 3.17185 3.31708 3.36452 3.78727 3.85587 3.89379 4.10939 4.13689 4.21803 4.32639 4.45609 4.50441 4.69864 4.77883 4.81567 4.97633 5.01296 5.03590 5.15351 5.23233 5.32718 5.38720 5.45604 5.67358 5.71877 5.84286 6.28203 6.40557 6.87522 7.10251 7.40718 7.77014 8.17754 9.15844 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016857 B = 0.006073 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.593463 B = 4609.373762 C = 5932.477073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 C -0.130 4.130 3 C 0.270 3.730 4 N -0.584 5.584 5 C -0.257 4.257 6 H 0.066 0.934 7 C -0.042 4.042 8 N -0.913 5.913 9 Si 0.957 3.043 10 H -0.277 1.277 11 H -0.291 1.291 12 H -0.292 1.292 13 C 0.193 3.807 14 C 0.094 3.906 15 N -0.443 5.443 16 C 0.046 3.954 17 C -0.106 4.106 18 C -0.090 4.090 19 C -0.089 4.089 20 C -0.098 4.098 21 C 0.051 3.949 22 N -0.447 5.447 23 C 0.107 3.893 24 C -0.101 4.101 25 H 0.222 0.778 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.247 0.753 29 H 0.053 0.947 30 H 0.097 0.903 31 H 0.134 0.866 32 H 0.171 0.829 33 H 0.177 0.823 34 H 0.153 0.847 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.002 -0.263 12.772 16.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 C -0.133 4.133 3 C 0.145 3.855 4 N -0.304 5.304 5 C -0.387 4.387 6 H 0.084 0.916 7 C -0.238 4.238 8 N -0.558 5.558 9 Si 0.786 3.214 10 H -0.202 1.202 11 H -0.218 1.218 12 H -0.219 1.219 13 C 0.065 3.935 14 C -0.064 4.064 15 N -0.157 5.157 16 C -0.079 4.079 17 C -0.126 4.126 18 C -0.109 4.109 19 C -0.109 4.109 20 C -0.117 4.117 21 C -0.074 4.074 22 N -0.163 5.163 23 C -0.049 4.049 24 C -0.159 4.159 25 H 0.239 0.761 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.114 0.886 31 H 0.152 0.848 32 H 0.188 0.812 33 H 0.194 0.806 34 H 0.170 0.830 35 H 0.106 0.894 36 H 0.114 0.886 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 11.163 -0.228 12.610 16.843 hybrid contribution -0.255 0.511 -1.508 1.612 sum 10.908 0.283 11.103 15.567 Atomic orbital electron populations 1.24988 0.96293 1.02953 1.06465 1.24417 0.95779 0.97715 0.95378 1.17789 0.83242 0.85010 0.99421 1.44020 1.74280 1.11213 1.00857 1.19401 1.22989 1.10241 0.86066 0.91625 1.25528 0.97401 1.00744 1.00161 1.70212 1.24713 1.38596 1.22282 0.85365 0.77932 0.77495 0.80588 1.20226 1.21799 1.21880 1.19861 0.87863 0.98842 0.86908 1.23750 0.99133 0.91193 0.92361 1.68584 1.00507 1.27611 1.19046 1.20188 0.92940 0.97106 0.97635 1.21037 0.92388 0.98585 1.00568 1.21408 0.95781 0.98239 0.95496 1.21441 1.00885 0.92781 0.95746 1.21065 0.89149 1.01139 1.00349 1.20063 0.96130 0.93143 0.98014 1.68538 1.00216 1.25466 1.22035 1.22779 0.93746 0.95224 0.93153 1.20954 0.94469 0.97045 1.03391 0.76107 0.91654 0.91490 0.94288 0.92860 0.88551 0.84809 0.81186 0.80599 0.82971 0.89401 0.88574 0.88495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -12.28 19.25 74.32 1.43 -10.85 16 2 C -0.13 -6.05 11.53 31.13 0.36 -5.69 16 3 C 0.27 12.52 5.38 84.57 0.46 12.98 16 4 N -0.58 -28.39 2.48 -716.89 -1.78 -30.17 16 5 C -0.26 -14.16 9.66 84.03 0.81 -13.35 16 6 H 0.07 3.75 7.88 -2.91 -0.02 3.73 16 7 C -0.04 -2.36 4.99 84.86 0.42 -1.94 16 8 N -0.91 -52.18 9.24 21.65 0.20 -51.98 16 9 Si 0.96 46.14 29.58 68.60 2.03 48.17 16 10 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 11 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 12 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 13 C 0.19 7.88 5.71 85.63 0.49 8.37 16 14 C 0.09 3.74 6.34 42.97 0.27 4.01 16 15 N -0.44 -18.64 10.38 -176.25 -1.83 -20.47 16 16 C 0.05 1.67 6.59 40.31 0.27 1.93 16 17 C -0.11 -3.08 9.99 22.34 0.22 -2.86 16 18 C -0.09 -1.76 9.95 22.04 0.22 -1.54 16 19 C -0.09 -1.58 9.95 22.04 0.22 -1.36 16 20 C -0.10 -2.36 9.99 22.34 0.22 -2.14 16 21 C 0.05 1.71 6.59 40.31 0.27 1.98 16 22 N -0.45 -15.49 10.38 -176.25 -1.83 -17.32 16 23 C 0.11 3.68 6.79 42.97 0.29 3.98 16 24 C -0.10 -2.65 9.17 71.24 0.65 -1.99 16 25 H 0.22 7.57 7.80 -4.41 -0.03 7.53 16 26 H 0.07 3.47 6.41 -2.39 -0.02 3.45 16 27 H 0.07 2.61 5.84 -2.39 -0.01 2.60 16 28 H 0.25 13.96 8.31 -92.70 -0.77 13.19 16 29 H 0.05 2.30 8.08 -2.38 -0.02 2.28 16 30 H 0.10 3.33 5.64 -2.39 -0.01 3.32 16 31 H 0.13 3.78 8.06 -2.91 -0.02 3.76 16 32 H 0.17 1.96 8.06 -2.91 -0.02 1.93 16 33 H 0.18 1.53 8.06 -2.91 -0.02 1.50 16 34 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 35 H 0.09 2.31 6.38 -2.38 -0.02 2.29 16 36 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.10 2.28 6.15 -2.39 -0.01 2.26 16 Total: -1.00 -70.88 318.12 4.48 -66.40 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 1.09 Total: 13.84 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: 6.60 Total: -8.48 kcal Atomic # 7 Polarization: -114.70 SS G_CDS: -5.24 Total: -119.94 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -70.88 4.48 -66.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491387541.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.625 kcal (2) G-P(sol) polarization free energy of solvation -70.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds